Ggra10625.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10625.t1
Unique Name	Ggra10625.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:418969..419895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122222.AXWR01000002_gene2129
PFAMs	EamA
Max annot lvl	1297\|Deinococcus-Thermus
Evalue	6.32e-30
EggNOG OGs	COG0697@1\|root,COG0697@2\|Bacteria,1WIES@1297\|Deinococcus-Thermus
Description	PFAM EamA-like transporter family
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10625	Ggra10625	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 418969..419895 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10625.t1.start1	Ggra10625.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 418969..418971 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10625.t1.CDS1	Ggra10625.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 418969..419895 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10625.t1.exon1	Ggra10625.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 418969..419895 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10625.t1.stop1	Ggra10625.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 419893..419895 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10625.t1	Ggra10625.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 418969..419895 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:418969..419895+
coding sequence from alignment at tig00000904_pilon:418969..419895+

mRNA sequence

>Ggra10625.t1 ID=Ggra10625.t1|Name=Ggra10625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MATFLACAKLLYILPVALSPAHFNAARLVVASLFFLPVLLREIPNIRSSP
RPTMRLLRAGCELGILMFFANIMQIFGLRYTDASRAAFLQQMSTVLVPLA
AAALRIETLTPRVCTGAACALGGVALLTLTAAPAAAGAAAALRPLGDCME
LFSAVILTVFMLRCSHHARRTKKSGVLVAMKVCTQAVLSLVWLGGNALIN
NASSLNVTSLAATAASTSLAWTPMAIFLNVLLVLWAGVIVSAGVSWLQTM
GQQAVPASEAAVLFAAQPLWASIVATLMLGERLTSLGMAGAGMIVSGAVI
SSTGKKNS*

spliced messenger RNA

>Ggra10625.t1 ID=Ggra10625.t1|Name=Ggra10625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000904_pilon:418969..419895+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCTTCCTCGCGTGCGCAAAGCTTCTCTACATTCTGCCGGTCGC
TCTCTCCCCCGCCCATTTCAACGCTGCGCGTCTCGTCGTCGCGTCCTTAT
TCTTTCTTCCTGTGCTTCTTAGAGAAATTCCCAACATTCGATCCTCCCCA
CGTCCGACCATGCGCCTCCTTCGAGCGGGCTGCGAATTGGGCATTCTCAT
GTTCTTTGCCAACATCATGCAGATATTTGGATTGCGGTATACGGACGCGT
CCCGCGCTGCCTTCTTGCAGCAGATGTCCACCGTGCTAGTTCCACTGGCG
GCTGCGGCATTGCGAATCGAGACTCTTACACCGCGCGTGTGTACCGGAGC
TGCGTGTGCGCTTGGTGGCGTCGCGCTGCTTACGCTTACCgccgctcctg
ctgctgctggtgcagcggccgctCTTCGGCCACTTGGCGACTGTATGGAG
TTGTTTTCGGCGGTCATTCTCACTGTGTTCATGTTGAGATGCTCCCATCA
CGCGAGAAGGACCAAGAAGAGTGGAGTACTTGTCGCGATGAAGGTTTGCA
CTCAGGCGGTGCTTTCGCTCGTATGGCTTGGAGGCAACGCCCTCATAAAC
AATGCCAGTTCGCTCAACGTCACATCTCTGGCGGCTACTGCGGCTTCGAC
CTCACTTGCGTGGACCCCTATGGCTATCTTTTTGAACGTGCTCCTCGTCC
TTTGGGCTGGTGTGATTGTTAGTGCTGGCGTGTCTTGGTTGCAGACAATG
GGCCAACAAGCAGTACCAGCATCTGAAGCGGCGGTTTTGTTTGCGGCACA
ACCTTTGTGGGCTAGTATTGTTGCGACGCTCATGTTGGGTGAACGGCTTA
CGTCTCTCGGAATGGCGGGCGCGGGTATGATCGTGTCCGGTGCAGTTATC
TCCAGTACTGGAAAGAAGAACAGCTGA

protein sequence of Ggra10625.t1

>Ggra10625.t1 ID=Ggra10625.t1|Name=Ggra10625.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MATFLACAKLLYILPVALSPAHFNAARLVVASLFFLPVLLREIPNIRSSP
RPTMRLLRAGCELGILMFFANIMQIFGLRYTDASRAAFLQQMSTVLVPLA
AAALRIETLTPRVCTGAACALGGVALLTLTAAPAAAGAAAALRPLGDCME
LFSAVILTVFMLRCSHHARRTKKSGVLVAMKVCTQAVLSLVWLGGNALIN
NASSLNVTSLAATAASTSLAWTPMAIFLNVLLVLWAGVIVSAGVSWLQTM
GQQAVPASEAAVLFAAQPLWASIVATLMLGERLTSLGMAGAGMIVSGAVI
SSTGKKNS*

mRNA from alignment at tig00000904_pilon:418969..419895+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10625.t1 ID=Ggra10625.t1|Name=Ggra10625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000904_pilon:418969..419895+ (Gracilaria gracilis GNS1m male)
ATGGCCACCTTCCTCGCGTGCGCAAAGCTTCTCTACATTCTGCCGGTCGC
TCTCTCCCCCGCCCATTTCAACGCTGCGCGTCTCGTCGTCGCGTCCTTAT
TCTTTCTTCCTGTGCTTCTTAGAGAAATTCCCAACATTCGATCCTCCCCA
CGTCCGACCATGCGCCTCCTTCGAGCGGGCTGCGAATTGGGCATTCTCAT
GTTCTTTGCCAACATCATGCAGATATTTGGATTGCGGTATACGGACGCGT
CCCGCGCTGCCTTCTTGCAGCAGATGTCCACCGTGCTAGTTCCACTGGCG
GCTGCGGCATTGCGAATCGAGACTCTTACACCGCGCGTGTGTACCGGAGC
TGCGTGTGCGCTTGGTGGCGTCGCGCTGCTTACGCTTACCgccgctcctg
ctgctgctggtgcagcggccgctCTTCGGCCACTTGGCGACTGTATGGAG
TTGTTTTCGGCGGTCATTCTCACTGTGTTCATGTTGAGATGCTCCCATCA
CGCGAGAAGGACCAAGAAGAGTGGAGTACTTGTCGCGATGAAGGTTTGCA
CTCAGGCGGTGCTTTCGCTCGTATGGCTTGGAGGCAACGCCCTCATAAAC
AATGCCAGTTCGCTCAACGTCACATCTCTGGCGGCTACTGCGGCTTCGAC
CTCACTTGCGTGGACCCCTATGGCTATCTTTTTGAACGTGCTCCTCGTCC
TTTGGGCTGGTGTGATTGTTAGTGCTGGCGTGTCTTGGTTGCAGACAATG
GGCCAACAAGCAGTACCAGCATCTGAAGCGGCGGTTTTGTTTGCGGCACA
ACCTTTGTGGGCTAGTATTGTTGCGACGCTCATGTTGGGTGAACGGCTTA
CGTCTCTCGGAATGGCGGGCGCGGGTATGATCGTGTCCGGTGCAGTTATC
TCCAGTACTGGAAAGAAGAACAGCTGA

Coding sequence (CDS) from alignment at tig00000904_pilon:418969..419895+

>Ggra10625.t1 ID=Ggra10625.t1|Name=Ggra10625.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000904_pilon:418969..419895+ (Gracilaria gracilis GNS1m male)
ATGGCCACCTTCCTCGCGTGCGCAAAGCTTCTCTACATTCTGCCGGTCGC
TCTCTCCCCCGCCCATTTCAACGCTGCGCGTCTCGTCGTCGCGTCCTTAT
TCTTTCTTCCTGTGCTTCTTAGAGAAATTCCCAACATTCGATCCTCCCCA
CGTCCGACCATGCGCCTCCTTCGAGCGGGCTGCGAATTGGGCATTCTCAT
GTTCTTTGCCAACATCATGCAGATATTTGGATTGCGGTATACGGACGCGT
CCCGCGCTGCCTTCTTGCAGCAGATGTCCACCGTGCTAGTTCCACTGGCG
GCTGCGGCATTGCGAATCGAGACTCTTACACCGCGCGTGTGTACCGGAGC
TGCGTGTGCGCTTGGTGGCGTCGCGCTGCTTACGCTTACCgccgctcctg
ctgctgctggtgcagcggccgctCTTCGGCCACTTGGCGACTGTATGGAG
TTGTTTTCGGCGGTCATTCTCACTGTGTTCATGTTGAGATGCTCCCATCA
CGCGAGAAGGACCAAGAAGAGTGGAGTACTTGTCGCGATGAAGGTTTGCA
CTCAGGCGGTGCTTTCGCTCGTATGGCTTGGAGGCAACGCCCTCATAAAC
AATGCCAGTTCGCTCAACGTCACATCTCTGGCGGCTACTGCGGCTTCGAC
CTCACTTGCGTGGACCCCTATGGCTATCTTTTTGAACGTGCTCCTCGTCC
TTTGGGCTGGTGTGATTGTTAGTGCTGGCGTGTCTTGGTTGCAGACAATG
GGCCAACAAGCAGTACCAGCATCTGAAGCGGCGGTTTTGTTTGCGGCACA
ACCTTTGTGGGCTAGTATTGTTGCGACGCTCATGTTGGGTGAACGGCTTA
CGTCTCTCGGAATGGCGGGCGCGGGTATGATCGTGTCCGGTGCAGTTATC
TCCAGTACTGGAAAGAAGAACAGCTGA