Ggra10624.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10624.t1
Unique NameGgra10624.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:416041..416981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705742.1
Preferred nameRPS6
PFAMsRibosomal_S6e
Max annot lvl2759|Eukaryota
KEGG koko:K02991,ko:K07611,ko:K13022,ko:K14498,ko:K17284
KEGG Pathwayko01521,ko03010,ko03320,ko04016,ko04066,ko04075,ko04150,ko04151,ko04210,ko04214,ko04371,ko04714,ko04910,ko05205,map01521,map03010,map03320,map04016,map04066,map04075,map04150,map04151,map04210,map04214,map04371,map04714,map04910,map05205
KEGG ModuleM00177,M00179
GOsGO:0000003,GO:0000028,GO:0000075,GO:0000082,GO:0000184,GO:0000278,GO:0000281,GO:0000462,GO:0000910,GO:0000956,GO:0001775,GO:0001776,GO:0001890,GO:0002181,GO:0002252,GO:0002260,GO:0002262,GO:0002263,GO:0002285,GO:0002286,GO:0002309,GO:0002366,GO:0002376,GO:0002520,GO:0002521,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0005938,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006924,GO:0006955,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007369,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022605,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030217,GO:0030218,GO:0030425,GO:0030490,GO:0030587,GO:0030684,GO:0030686,GO:0031929,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032943,GO:0032991,GO:0033036,GO:0033077,GO:0033365,GO:0033500,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0035690,GO:0035770,GO:0036464,GO:0036477,GO:0042098,GO:0042110,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042592,GO:0042593,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043029,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045047,GO:0045184,GO:0045321,GO:0045471,GO:0045786,GO:0045930,GO:0046483,GO:0046649,GO:0046651,GO:0046677,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048598,GO:0048608,GO:0048609,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060255,GO:0060548,GO:0061458,GO:0061515,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070227,GO:0070231,GO:0070661,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071236,GO:0071310,GO:0071361,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071887,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090702,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0099120,GO:0099568,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1901888,GO:1901889,GO:1903047,GO:1903347,GO:1990904,GO:2000810
Evalue8.91e-101
EggNOG OGsCOG2125@1|root,KOG1646@2759|Eukaryota
EC2.7.11.1
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko01002,ko03011,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10624Ggra10624Gracilaria gracilis GNS1m malegenetig00000904_pilon 416041..416981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10624.t1Ggra10624.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 416041..416981 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10624.t1.start1Ggra10624.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 416041..416043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10624.t1.CDS1Ggra10624.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 416041..416046 +
Ggra10624.t1.CDS2Ggra10624.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 416250..416981 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10624.t1.exon1Ggra10624.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 416041..416046 +
Ggra10624.t1.exon2Ggra10624.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 416250..416981 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10624.t1.intron1Ggra10624.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 416047..416249 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10624.t1.stop1Ggra10624.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 416979..416981 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10624.t1 ID=Ggra10624.t1|Name=Ggra10624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=246bp
MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIF
RIMGGQDKQGFAMKQGVLTPNRVRLLMDRGVSGCRGYGMRKGERKRKSVR
GCVISHQISVLNLLVVKNGEAQIAGLSDRNLPRRLGPKRASKIRKLFNLT
KSDDVRKYVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYA
LKVAAIKASKAAAAEYEKLLAQRNAEARVSRKTSLSKRRSTKADH*
back to top

spliced messenger RNA

>Ggra10624.t1 ID=Ggra10624.t1|Name=Ggra10624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00000904_pilon:416041..416981+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCAATCTTGCAGACCCGCAAACGGGTGCTCAGAAGCAAATCGA
CATCGATGATGAAAAGAAGCTTCAACATCTCTACGACATGCGTCTCGCGC
AAGAGATTAAGGGTGAGGACCTTGGAGATGACTACAAGGGCTACATCTTC
AGGATCATGGGTGGTCAGGACAAGCAAGGTTTCGCAATGAAGCAGGGCGT
TCTCACCCCGAATCGTGTGCGCCTTCTCATGGACAGGGGTGTTTCTGGAT
GTCGCGGCTACGGAATGCGAAAAGGTGAGCGCAAACGCAAGAGTGTACGT
GGTTGTGTCATCTCTCATCAGATCTCTGTGCTCAACCTCCTTGTAGTCAA
GAACGGGGAGGCTCAGATCGCAGGCCTCTCAGACCGTAACCTTCCGCGTC
GTCTTGGACCGAAACGTGCGTCGAAGATTCGCAAGCTGTTCAATCTTACC
AAGAGTGATGACGTGCGCAAATACGTTATCCGTCGTGAGATTCCTGTGAA
GGAGGGAGCCAAGGATGGTGCCAAGCCCAAGTCGAAGGCTCCGAAGATCC
AGAGACTTGTAACACCGCTTACCATTCATCGTAAGCGTCGGAGGTACGCG
CTCAAGGTTGCCGCTATTAAGGCCTCTAAGGCGGCTGCGGCTGAATATGA
GAAGCTCTTAGCACAGCGAAACGCGGAAGCTCGTGTGAGTCGTAAGACCT
CGCTTTCTAAGAGACGCTCGACTAAGGCTGATCATTAA
back to top

protein sequence of Ggra10624.t1

>Ggra10624.t1 ID=Ggra10624.t1|Name=Ggra10624.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=246bp
MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIF
RIMGGQDKQGFAMKQGVLTPNRVRLLMDRGVSGCRGYGMRKGERKRKSVR
GCVISHQISVLNLLVVKNGEAQIAGLSDRNLPRRLGPKRASKIRKLFNLT
KSDDVRKYVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYA
LKVAAIKASKAAAAEYEKLLAQRNAEARVSRKTSLSKRRSTKADH*
back to top

mRNA from alignment at tig00000904_pilon:416041..416981+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10624.t1 ID=Ggra10624.t1|Name=Ggra10624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=941bp|location=Sequence derived from alignment at tig00000904_pilon:416041..416981+ (Gracilaria gracilis GNS1m male)
ATGAAGGTAAGTTCACCGTCATCACCTCTTTCTCGAGATTAGACCTTCAG
CGATGCGATCGCAGACACCAACTGTTTCAATAGCATTCGCAGTCGATCCA
CTACGAAATGCGCGTGCATCGCGTACGCTATCGTTCTATCGATGCTCGGC
AATCCCTCTGACCATTGAATTACTTCTTGCACCGCCTCTCATGGATCTGC
ATCAAACAGCTCAATCTTGCAGACCCGCAAACGGGTGCTCAGAAGCAAAT
CGACATCGATGATGAAAAGAAGCTTCAACATCTCTACGACATGCGTCTCG
CGCAAGAGATTAAGGGTGAGGACCTTGGAGATGACTACAAGGGCTACATC
TTCAGGATCATGGGTGGTCAGGACAAGCAAGGTTTCGCAATGAAGCAGGG
CGTTCTCACCCCGAATCGTGTGCGCCTTCTCATGGACAGGGGTGTTTCTG
GATGTCGCGGCTACGGAATGCGAAAAGGTGAGCGCAAACGCAAGAGTGTA
CGTGGTTGTGTCATCTCTCATCAGATCTCTGTGCTCAACCTCCTTGTAGT
CAAGAACGGGGAGGCTCAGATCGCAGGCCTCTCAGACCGTAACCTTCCGC
GTCGTCTTGGACCGAAACGTGCGTCGAAGATTCGCAAGCTGTTCAATCTT
ACCAAGAGTGATGACGTGCGCAAATACGTTATCCGTCGTGAGATTCCTGT
GAAGGAGGGAGCCAAGGATGGTGCCAAGCCCAAGTCGAAGGCTCCGAAGA
TCCAGAGACTTGTAACACCGCTTACCATTCATCGTAAGCGTCGGAGGTAC
GCGCTCAAGGTTGCCGCTATTAAGGCCTCTAAGGCGGCTGCGGCTGAATA
TGAGAAGCTCTTAGCACAGCGAAACGCGGAAGCTCGTGTGAGTCGTAAGA
CCTCGCTTTCTAAGAGACGCTCGACTAAGGCTGATCATTAA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:416041..416981+

>Ggra10624.t1 ID=Ggra10624.t1|Name=Ggra10624.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00000904_pilon:416041..416981+ (Gracilaria gracilis GNS1m male)
ATGAAGCTCAATCTTGCAGACCCGCAAACGGGTGCTCAGAAGCAAATCGA
CATCGATGATGAAAAGAAGCTTCAACATCTCTACGACATGCGTCTCGCGC
AAGAGATTAAGGGTGAGGACCTTGGAGATGACTACAAGGGCTACATCTTC
AGGATCATGGGTGGTCAGGACAAGCAAGGTTTCGCAATGAAGCAGGGCGT
TCTCACCCCGAATCGTGTGCGCCTTCTCATGGACAGGGGTGTTTCTGGAT
GTCGCGGCTACGGAATGCGAAAAGGTGAGCGCAAACGCAAGAGTGTACGT
GGTTGTGTCATCTCTCATCAGATCTCTGTGCTCAACCTCCTTGTAGTCAA
GAACGGGGAGGCTCAGATCGCAGGCCTCTCAGACCGTAACCTTCCGCGTC
GTCTTGGACCGAAACGTGCGTCGAAGATTCGCAAGCTGTTCAATCTTACC
AAGAGTGATGACGTGCGCAAATACGTTATCCGTCGTGAGATTCCTGTGAA
GGAGGGAGCCAAGGATGGTGCCAAGCCCAAGTCGAAGGCTCCGAAGATCC
AGAGACTTGTAACACCGCTTACCATTCATCGTAAGCGTCGGAGGTACGCG
CTCAAGGTTGCCGCTATTAAGGCCTCTAAGGCGGCTGCGGCTGAATATGA
GAAGCTCTTAGCACAGCGAAACGCGGAAGCTCGTGTGAGTCGTAAGACCT
CGCTTTCTAAGAGACGCTCGACTAAGGCTGATCATTAA
back to top