Ggra10618.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10618.t1
Unique NameGgra10618.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length632
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:399868..401763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707863.1
Preferred nameSDH1
PFAMsFAD_binding_2,Succ_DH_flav_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00045
KEGG koko:K00234
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
GOsGO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017076,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0030312,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0046956,GO:0050896,GO:0050897,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:0097159,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990204
Evalue0.0
EggNOG OGsCOG1053@1|root,KOG2403@2759|Eukaryota
EC1.3.5.1
Descriptionanaerobic respiration
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10618Ggra10618Gracilaria gracilis GNS1m malegenetig00000904_pilon 399868..401763 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10618.t1.start1Ggra10618.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 399868..399870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10618.t1.CDS1Ggra10618.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 399868..401763 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10618.t1.exon1Ggra10618.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 399868..401763 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10618.t1.stop1Ggra10618.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 401761..401763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10618.t1Ggra10618.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 399868..401763 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10618.t1 ID=Ggra10618.t1|Name=Ggra10618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=632bp
MLRRASSRILQRLGSAKRDLSTKTTKIGGYDVIDHEVDVCVVGAGGAGLR
ATIGACEAGLKTACVTKLFPTRSHTVAAQGGINGALGNMTKDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPETIIELEHYGVPFSRTEDGLIYQRAFGG
QSLDFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGIIALCMEDGSLHRFNAHSTIIATGGYGKCYFSATSAHTCT
GDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSVKDLASRDVVSRSMTIEIREGRGVGRDKDHIFLHLDHLEP
TVLKERLPGITETAKVFAGVDVHKEPIPVLPTVHYNMGGIPTNWRGEVVT
LKDGDANYVIPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSTHRPLPADGGEKAIADMDAVRYADGELRTSEIRMNMQKIMQEH
AAVFRTDESLKEGCKKIDDCYESFASVKTSDRDMIFNTDMIETLELKNLL
QNAAITMHSAEARKESRGAHAREDFTERDDERWMKHTLGWVSEHTKKKYE
RGFVGIDYRPVINKSLDESEQAPFPPAKRVY*
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spliced messenger RNA

>Ggra10618.t1 ID=Ggra10618.t1|Name=Ggra10618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00000904_pilon:399868..401763+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGAAGGGCATCTTCCCGTATCTTGCAACGGCTCGGCTCCGCCAA
ACGAGACTTGTCAACAAAGACCACCAAAATAGGCGGCTATGACGTCATTG
ATCACGAAGTCGATGTGTGCGTGGTTGGTGCTGGAGGCGCCGGACTTCGG
GCGACGATCGGAGCCTGTGAAGCTGGACTTAAAACCGCGTGCGTGACCAA
ACTATTCCCCACACGTTCGCACACGGTTGCTGCACAAGGCGGTATCAATG
GAGCGTTGGGAAACATGACAAAGGACGACTGGAGATGGCACATGTACGAT
ACCGTCAAAGGCTCTGACTGGCTTGGCGATCAGGACGCCATTCATTACAT
GTGTCGAGAGGCTCCGGAGACGATTATTGAACTGGAGCACTACGGCGTGC
CATTCAGTCGTACTGAAGATGGGCTGATTTATCAGCGAGCGTTTGGCGGT
CAGTCTCTAGACTTTGGAAAGGGTGGACAAGCTTACCGATGTGCGGCAGC
GGCTGATCGTACTGGACATGCCATGCTGCATACTTTGTACGGCCAGTCTT
TAAAGCATGACGCCAACTTTTTCGTTGAGTACTTTGCATTGGATCTGATC
ATGGACCCTCATGACGGAAGTTGTCGTGGCATCATTGCGCTTTGTATGGA
AGATGGATCTCTTCATCGCTTCAATGCTCACTCGACGATCATCGCGACGG
GTGGGTACGGGAAATGCTACTTTAGTGCAACTTCTGCTCATACCTGCACG
GGTGACGGAAACGCTATGGTAGCGCGCGCTGGGCTCCCTCTGCAGGACTT
GGAATTTGTTCAATTCCATCCCACAGGTATCTATGGTGCGGGCTGTCTCA
TCACAGAAGGCGCGCGTGGTGAAGGGGGTTTCCTGAAGAATGCAAATGGG
GAGCGGTTTATGGAAAGGTACGCGCCATCAGTAAAGGATCTGGCTTCGCG
CGATGTGGTTTCCCGTTCAATGACAATAGAGATTCGAGAAGGTCGTGGAG
TGGGTCGAGACAAGGACCACATCTTTTTGCATTTGGACCACTTGGAACCA
ACAGTGCTGAAGGAACGACTGCCAGGCATCACGGAAACGGCCAAGGTATT
CGCGGGCGTGGACGTGCACAAGGAACCTATCCCTGTGTTGCCCACGGTGC
ACTACAACATGGGCGGTATCCCCACAAACTGGCGTGGCGAAGTGGTGACG
CTAAAGGACGGCGACGCCAACTACGTGATCCCGGGACTGTTGGCGGCGGG
CGAGGCAGCGTGTGCAAGCGTTCATGGCGCGAACCGACTGGGAGCAAATT
CGCTGCTGGATATCGTAGTGTTCGGACGCGCAACTGCCAAACGAGTAGCC
GAGCTGGTGAAACCCAACAGCACACATCGACCTTTGCCGGCCGATGGCGG
CGAAAAGGCAATTGCTGATATGGACGCGGTGCGATACGCGGACGGAGAGT
TGCGCACATCGGAGATTCGAATGAACATGCAAAAGATCATGCAGGAGCAC
GCGGCGGTGTTCCGCACGGACGAGAGCTTGAAGGAAGGGTGCAAGAAGAT
TGATGATTGCTACGAAAGTTTTGCGTCAGTGAAGACGAGTGACCGAGACA
TGATCTTTAATACGGACATGATTGAGACGTTAGAGTTGAAGAATCTGCTG
CAAAATGCTGCGATTACTATGCACAGCGCGGAGGCGCGAAAGGAGAGCCG
CGGGGCGCATGCGCGGGAGGACTTTACGGAGCGCGACGACGAGAGGTGGA
TGAAGCACACTCTGGGCTGGGTGAGCGAGCACACGAAGAAGAAGTATGAG
CGCGGGTTTGTGGGGATTGATTATCGACCGGTGATTAACAAGAGCCTCGA
CGAGTCGGAACAGGCTCCTTTCCCTCCCGCCAAGCGCGTGTATTAG
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protein sequence of Ggra10618.t1

>Ggra10618.t1 ID=Ggra10618.t1|Name=Ggra10618.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=632bp
MLRRASSRILQRLGSAKRDLSTKTTKIGGYDVIDHEVDVCVVGAGGAGLR
ATIGACEAGLKTACVTKLFPTRSHTVAAQGGINGALGNMTKDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPETIIELEHYGVPFSRTEDGLIYQRAFGG
QSLDFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGIIALCMEDGSLHRFNAHSTIIATGGYGKCYFSATSAHTCT
GDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSVKDLASRDVVSRSMTIEIREGRGVGRDKDHIFLHLDHLEP
TVLKERLPGITETAKVFAGVDVHKEPIPVLPTVHYNMGGIPTNWRGEVVT
LKDGDANYVIPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSTHRPLPADGGEKAIADMDAVRYADGELRTSEIRMNMQKIMQEH
AAVFRTDESLKEGCKKIDDCYESFASVKTSDRDMIFNTDMIETLELKNLL
QNAAITMHSAEARKESRGAHAREDFTERDDERWMKHTLGWVSEHTKKKYE
RGFVGIDYRPVINKSLDESEQAPFPPAKRVY*
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mRNA from alignment at tig00000904_pilon:399868..401763+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10618.t1 ID=Ggra10618.t1|Name=Ggra10618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00000904_pilon:399868..401763+ (Gracilaria gracilis GNS1m male)
ATGCTGCGAAGGGCATCTTCCCGTATCTTGCAACGGCTCGGCTCCGCCAA
ACGAGACTTGTCAACAAAGACCACCAAAATAGGCGGCTATGACGTCATTG
ATCACGAAGTCGATGTGTGCGTGGTTGGTGCTGGAGGCGCCGGACTTCGG
GCGACGATCGGAGCCTGTGAAGCTGGACTTAAAACCGCGTGCGTGACCAA
ACTATTCCCCACACGTTCGCACACGGTTGCTGCACAAGGCGGTATCAATG
GAGCGTTGGGAAACATGACAAAGGACGACTGGAGATGGCACATGTACGAT
ACCGTCAAAGGCTCTGACTGGCTTGGCGATCAGGACGCCATTCATTACAT
GTGTCGAGAGGCTCCGGAGACGATTATTGAACTGGAGCACTACGGCGTGC
CATTCAGTCGTACTGAAGATGGGCTGATTTATCAGCGAGCGTTTGGCGGT
CAGTCTCTAGACTTTGGAAAGGGTGGACAAGCTTACCGATGTGCGGCAGC
GGCTGATCGTACTGGACATGCCATGCTGCATACTTTGTACGGCCAGTCTT
TAAAGCATGACGCCAACTTTTTCGTTGAGTACTTTGCATTGGATCTGATC
ATGGACCCTCATGACGGAAGTTGTCGTGGCATCATTGCGCTTTGTATGGA
AGATGGATCTCTTCATCGCTTCAATGCTCACTCGACGATCATCGCGACGG
GTGGGTACGGGAAATGCTACTTTAGTGCAACTTCTGCTCATACCTGCACG
GGTGACGGAAACGCTATGGTAGCGCGCGCTGGGCTCCCTCTGCAGGACTT
GGAATTTGTTCAATTCCATCCCACAGGTATCTATGGTGCGGGCTGTCTCA
TCACAGAAGGCGCGCGTGGTGAAGGGGGTTTCCTGAAGAATGCAAATGGG
GAGCGGTTTATGGAAAGGTACGCGCCATCAGTAAAGGATCTGGCTTCGCG
CGATGTGGTTTCCCGTTCAATGACAATAGAGATTCGAGAAGGTCGTGGAG
TGGGTCGAGACAAGGACCACATCTTTTTGCATTTGGACCACTTGGAACCA
ACAGTGCTGAAGGAACGACTGCCAGGCATCACGGAAACGGCCAAGGTATT
CGCGGGCGTGGACGTGCACAAGGAACCTATCCCTGTGTTGCCCACGGTGC
ACTACAACATGGGCGGTATCCCCACAAACTGGCGTGGCGAAGTGGTGACG
CTAAAGGACGGCGACGCCAACTACGTGATCCCGGGACTGTTGGCGGCGGG
CGAGGCAGCGTGTGCAAGCGTTCATGGCGCGAACCGACTGGGAGCAAATT
CGCTGCTGGATATCGTAGTGTTCGGACGCGCAACTGCCAAACGAGTAGCC
GAGCTGGTGAAACCCAACAGCACACATCGACCTTTGCCGGCCGATGGCGG
CGAAAAGGCAATTGCTGATATGGACGCGGTGCGATACGCGGACGGAGAGT
TGCGCACATCGGAGATTCGAATGAACATGCAAAAGATCATGCAGGAGCAC
GCGGCGGTGTTCCGCACGGACGAGAGCTTGAAGGAAGGGTGCAAGAAGAT
TGATGATTGCTACGAAAGTTTTGCGTCAGTGAAGACGAGTGACCGAGACA
TGATCTTTAATACGGACATGATTGAGACGTTAGAGTTGAAGAATCTGCTG
CAAAATGCTGCGATTACTATGCACAGCGCGGAGGCGCGAAAGGAGAGCCG
CGGGGCGCATGCGCGGGAGGACTTTACGGAGCGCGACGACGAGAGGTGGA
TGAAGCACACTCTGGGCTGGGTGAGCGAGCACACGAAGAAGAAGTATGAG
CGCGGGTTTGTGGGGATTGATTATCGACCGGTGATTAACAAGAGCCTCGA
CGAGTCGGAACAGGCTCCTTTCCCTCCCGCCAAGCGCGTGTATTAG
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Coding sequence (CDS) from alignment at tig00000904_pilon:399868..401763+

>Ggra10618.t1 ID=Ggra10618.t1|Name=Ggra10618.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1896bp|location=Sequence derived from alignment at tig00000904_pilon:399868..401763+ (Gracilaria gracilis GNS1m male)
ATGCTGCGAAGGGCATCTTCCCGTATCTTGCAACGGCTCGGCTCCGCCAA
ACGAGACTTGTCAACAAAGACCACCAAAATAGGCGGCTATGACGTCATTG
ATCACGAAGTCGATGTGTGCGTGGTTGGTGCTGGAGGCGCCGGACTTCGG
GCGACGATCGGAGCCTGTGAAGCTGGACTTAAAACCGCGTGCGTGACCAA
ACTATTCCCCACACGTTCGCACACGGTTGCTGCACAAGGCGGTATCAATG
GAGCGTTGGGAAACATGACAAAGGACGACTGGAGATGGCACATGTACGAT
ACCGTCAAAGGCTCTGACTGGCTTGGCGATCAGGACGCCATTCATTACAT
GTGTCGAGAGGCTCCGGAGACGATTATTGAACTGGAGCACTACGGCGTGC
CATTCAGTCGTACTGAAGATGGGCTGATTTATCAGCGAGCGTTTGGCGGT
CAGTCTCTAGACTTTGGAAAGGGTGGACAAGCTTACCGATGTGCGGCAGC
GGCTGATCGTACTGGACATGCCATGCTGCATACTTTGTACGGCCAGTCTT
TAAAGCATGACGCCAACTTTTTCGTTGAGTACTTTGCATTGGATCTGATC
ATGGACCCTCATGACGGAAGTTGTCGTGGCATCATTGCGCTTTGTATGGA
AGATGGATCTCTTCATCGCTTCAATGCTCACTCGACGATCATCGCGACGG
GTGGGTACGGGAAATGCTACTTTAGTGCAACTTCTGCTCATACCTGCACG
GGTGACGGAAACGCTATGGTAGCGCGCGCTGGGCTCCCTCTGCAGGACTT
GGAATTTGTTCAATTCCATCCCACAGGTATCTATGGTGCGGGCTGTCTCA
TCACAGAAGGCGCGCGTGGTGAAGGGGGTTTCCTGAAGAATGCAAATGGG
GAGCGGTTTATGGAAAGGTACGCGCCATCAGTAAAGGATCTGGCTTCGCG
CGATGTGGTTTCCCGTTCAATGACAATAGAGATTCGAGAAGGTCGTGGAG
TGGGTCGAGACAAGGACCACATCTTTTTGCATTTGGACCACTTGGAACCA
ACAGTGCTGAAGGAACGACTGCCAGGCATCACGGAAACGGCCAAGGTATT
CGCGGGCGTGGACGTGCACAAGGAACCTATCCCTGTGTTGCCCACGGTGC
ACTACAACATGGGCGGTATCCCCACAAACTGGCGTGGCGAAGTGGTGACG
CTAAAGGACGGCGACGCCAACTACGTGATCCCGGGACTGTTGGCGGCGGG
CGAGGCAGCGTGTGCAAGCGTTCATGGCGCGAACCGACTGGGAGCAAATT
CGCTGCTGGATATCGTAGTGTTCGGACGCGCAACTGCCAAACGAGTAGCC
GAGCTGGTGAAACCCAACAGCACACATCGACCTTTGCCGGCCGATGGCGG
CGAAAAGGCAATTGCTGATATGGACGCGGTGCGATACGCGGACGGAGAGT
TGCGCACATCGGAGATTCGAATGAACATGCAAAAGATCATGCAGGAGCAC
GCGGCGGTGTTCCGCACGGACGAGAGCTTGAAGGAAGGGTGCAAGAAGAT
TGATGATTGCTACGAAAGTTTTGCGTCAGTGAAGACGAGTGACCGAGACA
TGATCTTTAATACGGACATGATTGAGACGTTAGAGTTGAAGAATCTGCTG
CAAAATGCTGCGATTACTATGCACAGCGCGGAGGCGCGAAAGGAGAGCCG
CGGGGCGCATGCGCGGGAGGACTTTACGGAGCGCGACGACGAGAGGTGGA
TGAAGCACACTCTGGGCTGGGTGAGCGAGCACACGAAGAAGAAGTATGAG
CGCGGGTTTGTGGGGATTGATTATCGACCGGTGATTAACAAGAGCCTCGA
CGAGTCGGAACAGGCTCCTTTCCCTCCCGCCAAGCGCGTGTATTAG
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