Ggra10609.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10609.t1
Unique NameGgra10609.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:381184..381682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_132158
Preferred nameBLOC1S1
PFAMsGCN5L1
Max annot lvl2759|Eukaryota
KEGG rclassRC00649
KEGG koko:K00061,ko:K15078,ko:K20185
KEGG ReactionR03048,R08382
KEGG Pathwayko00830,ko03460,map00830,map03460
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005829,GO:0006091,GO:0006464,GO:0006473,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008057,GO:0008088,GO:0008089,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0009060,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0015980,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0018193,GO:0018205,GO:0018394,GO:0019538,GO:0022008,GO:0022622,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030705,GO:0031082,GO:0031083,GO:0031090,GO:0031175,GO:0031410,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031982,GO:0032418,GO:0032438,GO:0032501,GO:0032502,GO:0032991,GO:0033059,GO:0033363,GO:0036211,GO:0036465,GO:0036466,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043473,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045324,GO:0045333,GO:0046907,GO:0047496,GO:0048364,GO:0048468,GO:0048489,GO:0048490,GO:0048666,GO:0048699,GO:0048731,GO:0048753,GO:0048856,GO:0048869,GO:0050808,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055114,GO:0060155,GO:0070013,GO:0071704,GO:0071840,GO:0072384,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0098916,GO:0098930,GO:0099003,GO:0099078,GO:0099111,GO:0099402,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099536,GO:0099537,GO:0120036,GO:1901564
Evalue3.1e-11
EggNOG OGsKOG3390@1|root,KOG3390@2759|Eukaryota
EC1.1.1.315
Descriptionanterograde synaptic vesicle transport
COG categoryH
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10609Ggra10609Gracilaria gracilis GNS1m malegenetig00000904_pilon 381184..381682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10609.t1Ggra10609.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 381184..381682 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10609.t1.start1Ggra10609.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 381184..381186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10609.t1.CDS1Ggra10609.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 381184..381244 +
Ggra10609.t1.CDS2Ggra10609.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 381316..381398 +
Ggra10609.t1.CDS3Ggra10609.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000904_pilon 381479..381682 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10609.t1.exon1Ggra10609.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 381184..381244 +
Ggra10609.t1.exon2Ggra10609.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 381316..381398 +
Ggra10609.t1.exon3Ggra10609.t1.exon3Gracilaria gracilis GNS1m maleexontig00000904_pilon 381479..381682 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10609.t1.intron1Ggra10609.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 381245..381315 +
Ggra10609.t1.intron2Ggra10609.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000904_pilon 381399..381478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10609.t1.stop1Ggra10609.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 381680..381682 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10609.t1 ID=Ggra10609.t1|Name=Ggra10609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=116bp
MLSVHLREAERRKNELKPSLSAGAQKVQKAASELSDALLKVVNEDVQEVY
QAERQIETELRNIERLLSSNGYQIHQWTTLLDRLTTELKELGDISNWVEV
LEQSANEIKNISTRL*
back to top

spliced messenger RNA

>Ggra10609.t1 ID=Ggra10609.t1|Name=Ggra10609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00000904_pilon:381184..381682+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCTGTTCACCTTCGTGAGGCGGAGCGAAGGAAAAATGAGCTGAA
ACCGTCATTGAGTGCAGGGGCTCAAAAGGTTCAAAAAGCAGCTTCGGAGC
TCAGTGATGCTCTTTTGAAGGTTGTTAATGAGGATGTTCAAGAGGTGTAC
CAGGCGGAACGTCAGATCGAAACGGAGCTCCGAAACATTGAGCGTTTGTT
GTCTTCTAATGGTTACCAAATTCATCAGTGGACCACTCTGCTCGATCGAC
TTACTACTGAACTGAAGGAGCTTGGTGACATATCTAACTGGGTAGAAGTA
CTGGAGCAATCTGCGAATGAAATTAAGAACATTTCCACCCGGCTGTGA
back to top

protein sequence of Ggra10609.t1

>Ggra10609.t1 ID=Ggra10609.t1|Name=Ggra10609.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bp
MLSVHLREAERRKNELKPSLSAGAQKVQKAASELSDALLKVVNEDVQEVY
QAERQIETELRNIERLLSSNGYQIHQWTTLLDRLTTELKELGDISNWVEV
LEQSANEIKNISTRL*
back to top

mRNA from alignment at tig00000904_pilon:381184..381682+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10609.t1 ID=Ggra10609.t1|Name=Ggra10609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp|location=Sequence derived from alignment at tig00000904_pilon:381184..381682+ (Gracilaria gracilis GNS1m male)
ATGTTGTCTGTTCACCTTCGTGAGGCGGAGCGAAGGAAAAATGAGCTGAA
ACCGTCATTGAGTATGTGTTGGATTCCTTCTGAACCTCATTATTGTGTTG
TCTAACATGATAACACTTCTTATCTCGTTCAGGTGCAGGGGCTCAAAAGG
TTCAAAAAGCAGCTTCGGAGCTCAGTGATGCTCTTTTGAAGGTTGTTAAT
GAGGATGTTCAAGAGGTATCTCAAATGTAGTCCACTTCAAAATACCTGAA
TCTAAACTACTTGATGTCATCTAACGCTTTCTTGTTTGCCATCAGGTGTA
CCAGGCGGAACGTCAGATCGAAACGGAGCTCCGAAACATTGAGCGTTTGT
TGTCTTCTAATGGTTACCAAATTCATCAGTGGACCACTCTGCTCGATCGA
CTTACTACTGAACTGAAGGAGCTTGGTGACATATCTAACTGGGTAGAAGT
ACTGGAGCAATCTGCGAATGAAATTAAGAACATTTCCACCCGGCTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:381184..381682+

>Ggra10609.t1 ID=Ggra10609.t1|Name=Ggra10609.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00000904_pilon:381184..381682+ (Gracilaria gracilis GNS1m male)
ATGTTGTCTGTTCACCTTCGTGAGGCGGAGCGAAGGAAAAATGAGCTGAA
ACCGTCATTGAGTGCAGGGGCTCAAAAGGTTCAAAAAGCAGCTTCGGAGC
TCAGTGATGCTCTTTTGAAGGTTGTTAATGAGGATGTTCAAGAGGTGTAC
CAGGCGGAACGTCAGATCGAAACGGAGCTCCGAAACATTGAGCGTTTGTT
GTCTTCTAATGGTTACCAAATTCATCAGTGGACCACTCTGCTCGATCGAC
TTACTACTGAACTGAAGGAGCTTGGTGACATATCTAACTGGGTAGAAGTA
CTGGAGCAATCTGCGAATGAAATTAAGAACATTTCCACCCGGCTGTGA
back to top