Ggra10607.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10607.t1
Unique Name	Ggra10607.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	468

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:377501..378904 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	768066.HELO_3068
PFAMs	Cupin_4
Max annot lvl	135619\|Oceanospirillales
KEGG ko	ko:K18850
Evalue	2.06e-70
EggNOG OGs	COG2850@1\|root,COG2850@2\|Bacteria,1MW30@1224\|Proteobacteria,1RN2Q@1236\|Gammaproteobacteria,1XH7N@135619\|Oceanospirillales
EC	1.14.11.47
Description	Transcription factor
COG category	S
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10607	Ggra10607	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 377501..378904 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10607.t1.start1	Ggra10607.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 377501..377503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10607.t1.CDS1	Ggra10607.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 377501..378904 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10607.t1.exon1	Ggra10607.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 377501..378904 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10607.t1.stop1	Ggra10607.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 378902..378904 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10607.t1	Ggra10607.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 377501..378904 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:377501..378904+
coding sequence from alignment at tig00000904_pilon:377501..378904+

mRNA sequence

>Ggra10607.t1 ID=Ggra10607.t1|Name=Ggra10607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp
MRRCTSAVKTQAYFNAARVEHTAFVNHFLPAPSKRPRHLNRSATCTLAPH
PLLTSPEEQQHFLQTIWGKKPHLFRNLLPVQSLTPDELAGLSCDLPSRII
RGRGDGETEGPYTLEHGPFSPDHFSTLPETDWTLLVDRVNQCVPQVADVH
NSFTFLPNWRFDDIMISYAPIGGSVGPHVDNYDVFLLQTSGTRLWKTSYT
PISVDEEQLVPGLDLRILRGAFQPDEEWVLEPGDALYVPPRFPHHGISLS
NDCVTYSVGFRAPSIASLMSGWVANVVQEQRLWEQLLHEDGNDLLPNVSD
PARVTDTTVQHAFDKLLSKLREDQGVKQQFRRWFATHLSQLGEPSEEETP
DDAEVQQMIHAIMRSVETENDLGVRQREGSTFIYACDEDKCCMYIDGEEW
PVENDRMATFICGRRSRSAAEYAELCLLEPSFKQLLCNLLTAGVLYTDDD
AYSERTEEDLDKSTEQK*

spliced messenger RNA

>Ggra10607.t1 ID=Ggra10607.t1|Name=Ggra10607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000904_pilon:377501..378904+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGCTGTACATCTGCAGTCAAAACACAGGCCTACTTCAATGCCGC
CCGTGTGGAGCATACCGCTTTTGTCAATCATTTCCTCCCAGCGCCGTCCA
AACGTCCTCGTCACTTAAACCGAAGCGCCACTTGCACATTGGCACCACAC
CCGCTGCTCACTTCGCCCGAAGAACAGCAGCATTTTTTGCAAACCATATG
GGGCAAGAAGCCTCATCTGTTTCGTAACCTACTCCCAGTACAGTCTCTGA
CCCCCGATGAACTCGCAGGTCTATCTTGTGACCTTCCATCTCGAATAATT
CGCGGTCGCGGCGATGGGGAGACGGAAGGACCGTACACCTTGGAACACGG
TCCGTTTTCGCCCGACCATTTCTCCACGCTCCCAGAGACGGACTGGACAC
TGTTGGTGGACCGCGTCAACCAGTGTGTTCCTCAAGTGGCTGATGTTCAT
AATAGTTTTACCTTTCTTCCCAACTGGCGTTTTGACGACATTATGATATC
GTACGCGCCCATAGGCGGTAGTGTAGGTCCGCATGTGGACAACTATGATG
TCTTCCTTCTCCAAACATCTGGCACCAGGCTTTGGAAGACTTCATACACC
CCGATCAGTGTAGATGAGGAGCAACTGGTACCTGGCCTAGACCTTCGAAT
ACTGCGAGGTGCATTCCAACCTGATGAGGAGTGGGTTTTGGAACCTGGTG
ATGCACTTTACGTCCCGCCACGTTTTCCTCATCATGGCATAAGTCTCAGT
AATGATTGTGTTACGTATAGTGTCGGGTTTCGAGCACCTTCTATTGCGAG
TTTAATGTCTGGATGGGTGGCAAATGTTGTGCAAGAACAGCGCTTGTGGG
AGCAACTCTTACATGAAGATGGTAACGATTTGCTGCCCAATGTATCGGAT
CCAGCGAGAGTGACGGATACAACTGTACAACACGCCTTCGACAAGTTGCT
TTCCAAGTTGAGAGAAGACCAAGGTGTTAAACAACAGTTTCGCAGATGGT
TCGCAACACATCTCAGCCAACTTGGAGAGCCAAGTGAAGAAGAAACACCC
GATGACGCTGAAGTACAGCAAATGATACATGCTATAATGAGGTCCGTTGA
GACTGAGAATGACCTCGGTGTAAGGCAGAGGGAGGGCTCTACATTCATTT
ACGCATGTGATGAGGATAAGTGCTGTATGTACATCGATGGCGAAGAATGG
CCAGTGGAAAACGATAGGATGGCAACCTTCATCTGTGGGCGAAGAAGTCG
AAGTGCTGCTGAATACGCAGAGCTCTGTCTCCTTGAACCATCTTTTAAAC
AACTCTTGTGCAATTTATTAACTGCCGGTGTTCTGTATACTGACGATGAT
GCGTATTCCGAGAGGACTGAGGAAGACCTTGATAAGAGTACAGAACAGAA
GTAG

protein sequence of Ggra10607.t1

>Ggra10607.t1 ID=Ggra10607.t1|Name=Ggra10607.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=468bp
MRRCTSAVKTQAYFNAARVEHTAFVNHFLPAPSKRPRHLNRSATCTLAPH
PLLTSPEEQQHFLQTIWGKKPHLFRNLLPVQSLTPDELAGLSCDLPSRII
RGRGDGETEGPYTLEHGPFSPDHFSTLPETDWTLLVDRVNQCVPQVADVH
NSFTFLPNWRFDDIMISYAPIGGSVGPHVDNYDVFLLQTSGTRLWKTSYT
PISVDEEQLVPGLDLRILRGAFQPDEEWVLEPGDALYVPPRFPHHGISLS
NDCVTYSVGFRAPSIASLMSGWVANVVQEQRLWEQLLHEDGNDLLPNVSD
PARVTDTTVQHAFDKLLSKLREDQGVKQQFRRWFATHLSQLGEPSEEETP
DDAEVQQMIHAIMRSVETENDLGVRQREGSTFIYACDEDKCCMYIDGEEW
PVENDRMATFICGRRSRSAAEYAELCLLEPSFKQLLCNLLTAGVLYTDDD
AYSERTEEDLDKSTEQK*

mRNA from alignment at tig00000904_pilon:377501..378904+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10607.t1 ID=Ggra10607.t1|Name=Ggra10607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000904_pilon:377501..378904+ (Gracilaria gracilis GNS1m male)
ATGAGGCGCTGTACATCTGCAGTCAAAACACAGGCCTACTTCAATGCCGC
CCGTGTGGAGCATACCGCTTTTGTCAATCATTTCCTCCCAGCGCCGTCCA
AACGTCCTCGTCACTTAAACCGAAGCGCCACTTGCACATTGGCACCACAC
CCGCTGCTCACTTCGCCCGAAGAACAGCAGCATTTTTTGCAAACCATATG
GGGCAAGAAGCCTCATCTGTTTCGTAACCTACTCCCAGTACAGTCTCTGA
CCCCCGATGAACTCGCAGGTCTATCTTGTGACCTTCCATCTCGAATAATT
CGCGGTCGCGGCGATGGGGAGACGGAAGGACCGTACACCTTGGAACACGG
TCCGTTTTCGCCCGACCATTTCTCCACGCTCCCAGAGACGGACTGGACAC
TGTTGGTGGACCGCGTCAACCAGTGTGTTCCTCAAGTGGCTGATGTTCAT
AATAGTTTTACCTTTCTTCCCAACTGGCGTTTTGACGACATTATGATATC
GTACGCGCCCATAGGCGGTAGTGTAGGTCCGCATGTGGACAACTATGATG
TCTTCCTTCTCCAAACATCTGGCACCAGGCTTTGGAAGACTTCATACACC
CCGATCAGTGTAGATGAGGAGCAACTGGTACCTGGCCTAGACCTTCGAAT
ACTGCGAGGTGCATTCCAACCTGATGAGGAGTGGGTTTTGGAACCTGGTG
ATGCACTTTACGTCCCGCCACGTTTTCCTCATCATGGCATAAGTCTCAGT
AATGATTGTGTTACGTATAGTGTCGGGTTTCGAGCACCTTCTATTGCGAG
TTTAATGTCTGGATGGGTGGCAAATGTTGTGCAAGAACAGCGCTTGTGGG
AGCAACTCTTACATGAAGATGGTAACGATTTGCTGCCCAATGTATCGGAT
CCAGCGAGAGTGACGGATACAACTGTACAACACGCCTTCGACAAGTTGCT
TTCCAAGTTGAGAGAAGACCAAGGTGTTAAACAACAGTTTCGCAGATGGT
TCGCAACACATCTCAGCCAACTTGGAGAGCCAAGTGAAGAAGAAACACCC
GATGACGCTGAAGTACAGCAAATGATACATGCTATAATGAGGTCCGTTGA
GACTGAGAATGACCTCGGTGTAAGGCAGAGGGAGGGCTCTACATTCATTT
ACGCATGTGATGAGGATAAGTGCTGTATGTACATCGATGGCGAAGAATGG
CCAGTGGAAAACGATAGGATGGCAACCTTCATCTGTGGGCGAAGAAGTCG
AAGTGCTGCTGAATACGCAGAGCTCTGTCTCCTTGAACCATCTTTTAAAC
AACTCTTGTGCAATTTATTAACTGCCGGTGTTCTGTATACTGACGATGAT
GCGTATTCCGAGAGGACTGAGGAAGACCTTGATAAGAGTACAGAACAGAA
GTAG

Coding sequence (CDS) from alignment at tig00000904_pilon:377501..378904+

>Ggra10607.t1 ID=Ggra10607.t1|Name=Ggra10607.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000904_pilon:377501..378904+ (Gracilaria gracilis GNS1m male)
ATGAGGCGCTGTACATCTGCAGTCAAAACACAGGCCTACTTCAATGCCGC
CCGTGTGGAGCATACCGCTTTTGTCAATCATTTCCTCCCAGCGCCGTCCA
AACGTCCTCGTCACTTAAACCGAAGCGCCACTTGCACATTGGCACCACAC
CCGCTGCTCACTTCGCCCGAAGAACAGCAGCATTTTTTGCAAACCATATG
GGGCAAGAAGCCTCATCTGTTTCGTAACCTACTCCCAGTACAGTCTCTGA
CCCCCGATGAACTCGCAGGTCTATCTTGTGACCTTCCATCTCGAATAATT
CGCGGTCGCGGCGATGGGGAGACGGAAGGACCGTACACCTTGGAACACGG
TCCGTTTTCGCCCGACCATTTCTCCACGCTCCCAGAGACGGACTGGACAC
TGTTGGTGGACCGCGTCAACCAGTGTGTTCCTCAAGTGGCTGATGTTCAT
AATAGTTTTACCTTTCTTCCCAACTGGCGTTTTGACGACATTATGATATC
GTACGCGCCCATAGGCGGTAGTGTAGGTCCGCATGTGGACAACTATGATG
TCTTCCTTCTCCAAACATCTGGCACCAGGCTTTGGAAGACTTCATACACC
CCGATCAGTGTAGATGAGGAGCAACTGGTACCTGGCCTAGACCTTCGAAT
ACTGCGAGGTGCATTCCAACCTGATGAGGAGTGGGTTTTGGAACCTGGTG
ATGCACTTTACGTCCCGCCACGTTTTCCTCATCATGGCATAAGTCTCAGT
AATGATTGTGTTACGTATAGTGTCGGGTTTCGAGCACCTTCTATTGCGAG
TTTAATGTCTGGATGGGTGGCAAATGTTGTGCAAGAACAGCGCTTGTGGG
AGCAACTCTTACATGAAGATGGTAACGATTTGCTGCCCAATGTATCGGAT
CCAGCGAGAGTGACGGATACAACTGTACAACACGCCTTCGACAAGTTGCT
TTCCAAGTTGAGAGAAGACCAAGGTGTTAAACAACAGTTTCGCAGATGGT
TCGCAACACATCTCAGCCAACTTGGAGAGCCAAGTGAAGAAGAAACACCC
GATGACGCTGAAGTACAGCAAATGATACATGCTATAATGAGGTCCGTTGA
GACTGAGAATGACCTCGGTGTAAGGCAGAGGGAGGGCTCTACATTCATTT
ACGCATGTGATGAGGATAAGTGCTGTATGTACATCGATGGCGAAGAATGG
CCAGTGGAAAACGATAGGATGGCAACCTTCATCTGTGGGCGAAGAAGTCG
AAGTGCTGCTGAATACGCAGAGCTCTGTCTCCTTGAACCATCTTTTAAAC
AACTCTTGTGCAATTTATTAACTGCCGGTGTTCTGTATACTGACGATGAT
GCGTATTCCGAGAGGACTGAGGAAGACCTTGATAAGAGTACAGAACAGAA
GTAG