Ggra10601.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10601.t1
Unique NameGgra10601.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:356652..358022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10601Ggra10601Gracilaria gracilis GNS1m malegenetig00000904_pilon 356652..358022 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10601.t1.start1Ggra10601.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 356652..356654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10601.t1.CDS1Ggra10601.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 356652..358022 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10601.t1.exon1Ggra10601.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 356652..358022 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10601.t1.stop1Ggra10601.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 358020..358022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10601.t1Ggra10601.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 356652..358022 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10601.t1 ID=Ggra10601.t1|Name=Ggra10601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MVFIAIGAIKAAKAAKREYDKDKKRSQIIAPLDNSRRNEFDNAPASASPE
WWTSDQAPETEPQQPQVSHNSFGAWSRDQLIEHVAEQQARQEEYDVRFRE
QLSNSSASLGSSRVPSASHSPALAVAQTRPDTEQTHHSEESPKQVLPPTI
APPVLEQEAELLEAGVSHNDTSVPASKVLSSKPPRPKKQSTCVEGSYEAL
MKASSTDLQQTKQGGSRMGGSSSGNDSISQQRTASRSQNGPELTDGSFES
ALRDGTATARYPPKPTLSSADGSNQLSTSPTSAFPSSANPKHLTRRSSMP
VQAMTIHAPDADDGGFSQNPEKHAVQGSAFAYTSTAKRTIGRPQGPSKGP
HVGNPVLSKAKSAVERPNSVQAAQGSAFQREGLCTKTRRKPRDTSATTLG
PRTVPVSRTAQQGNTSEVSNVNPPNRAGGGAAVGGSCMLAEGTMKKRRGR
RPIHDN*
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spliced messenger RNA

>Ggra10601.t1 ID=Ggra10601.t1|Name=Ggra10601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000904_pilon:356652..358022+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCATTGCAATTGGGGCGATTAAGGCCGCCAAAGCCGCGAAGAG
GGAATACGACAAGGACAAGAAACGCTCACAAATCATCGCACCACTAGATA
ACTCTCGTCGCAATGAGTTCGACAATGCTCCTGCGTCTGCCTCTCCGGAA
TGGTGGACCTCTGATCAGGCCCCAGAAACAGAACCACAACAACCACAAGT
TTCGCACAACTCCTTTGGTGCCTGGAGCCGAGACCAGCTTATAGAACATG
TTGCCGAGCAGCAAGCAAGACAAGAGGAATACGATGTAAGGTTTCGTGAA
CAGCTCTCCAATTCTTCTGCTTCACTTGGTTCTAGCCGTGTACCTTCTGC
CTCTCATTCACCTGCTCTGGCTGTGGCGCAAACGCGCCCCGATACGGAAC
AAACCCACCACAGCGAGGAAAGTCCAAAGCAAGTACTTCCGCCAACAATC
GCACCGCCTGTACTGGAACAAGAAGCAGAACTGCTCGAAGCAGGTGTATC
GCACAACGATACATCCGTTCCCGCGTCGAAGGTGCTCAGCTCCAAGCCAC
CACGTCCGAAAAAGCAGTCTACTTGCGTTGAAGGTTCATACGAAGCACTG
ATGAAAGCATCCTCTACCGATTTGCAGCAGACCAAGCAGGGTGGAAGTAG
AATGGGAGGAAGTTCTTCAGGCAATGATAGTATCTCGCAACAGAGAACTG
CATCCCGCTCGCAGAACGGGCCGGAACTAACAGATGGGTCTTTTGAGTCA
GCGCTCCGAGACGGAACTGCTACCGCGCGATACCCTCCCAAGCCAACTTT
GAGCAGTGCTGATGGTTCGAATCAGCTAAGTACATCGCCCACCTCGGCGT
TTCCATCCTCTGCAAACCCGAAACATTTGACAAGGCGAAGTTCTATGCCG
GTACAGGCAATGACTATCCATGCTCCGGATGCTGATGATGGAGGCTTTTC
ACAAAATCCGGAGAAGCATGCGGTGCAGGGCAGCGCATTTGCCTACACGT
CAACCGCCAAACGAACGATTGGGCGGCCACAAGGACCTTCTAAAGGCCCT
CACGTAGGAAACCCTGTTCTCTCGAAGGCAAAGAGCGCGGTAGAAAGGCC
CAACTCCGTACAAGCGGCACAAGGAAGCGCGTTCCAACGAGAAGGCTTGT
GCACGAAAACGAGAAGAAAGCCCCGTGACACGAGCGCAACAACTCTAGGA
CCACGTACTGTTCCGGTATCTAGGACTGCCCAGCAAGGTAACACAAGTGA
AGTTTCTAATGTGAATCCACCGAATAGAGCCGGTGGAGGTGCTGCGGTAG
GAGGAAGCTGCATGTTAGCGGAAGGTACTATGAAAAAGAGGCGGGGAAGG
AGACCGATTCACGATAACTAG
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protein sequence of Ggra10601.t1

>Ggra10601.t1 ID=Ggra10601.t1|Name=Ggra10601.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MVFIAIGAIKAAKAAKREYDKDKKRSQIIAPLDNSRRNEFDNAPASASPE
WWTSDQAPETEPQQPQVSHNSFGAWSRDQLIEHVAEQQARQEEYDVRFRE
QLSNSSASLGSSRVPSASHSPALAVAQTRPDTEQTHHSEESPKQVLPPTI
APPVLEQEAELLEAGVSHNDTSVPASKVLSSKPPRPKKQSTCVEGSYEAL
MKASSTDLQQTKQGGSRMGGSSSGNDSISQQRTASRSQNGPELTDGSFES
ALRDGTATARYPPKPTLSSADGSNQLSTSPTSAFPSSANPKHLTRRSSMP
VQAMTIHAPDADDGGFSQNPEKHAVQGSAFAYTSTAKRTIGRPQGPSKGP
HVGNPVLSKAKSAVERPNSVQAAQGSAFQREGLCTKTRRKPRDTSATTLG
PRTVPVSRTAQQGNTSEVSNVNPPNRAGGGAAVGGSCMLAEGTMKKRRGR
RPIHDN*
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mRNA from alignment at tig00000904_pilon:356652..358022+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10601.t1 ID=Ggra10601.t1|Name=Ggra10601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000904_pilon:356652..358022+ (Gracilaria gracilis GNS1m male)
ATGGTGTTCATTGCAATTGGGGCGATTAAGGCCGCCAAAGCCGCGAAGAG
GGAATACGACAAGGACAAGAAACGCTCACAAATCATCGCACCACTAGATA
ACTCTCGTCGCAATGAGTTCGACAATGCTCCTGCGTCTGCCTCTCCGGAA
TGGTGGACCTCTGATCAGGCCCCAGAAACAGAACCACAACAACCACAAGT
TTCGCACAACTCCTTTGGTGCCTGGAGCCGAGACCAGCTTATAGAACATG
TTGCCGAGCAGCAAGCAAGACAAGAGGAATACGATGTAAGGTTTCGTGAA
CAGCTCTCCAATTCTTCTGCTTCACTTGGTTCTAGCCGTGTACCTTCTGC
CTCTCATTCACCTGCTCTGGCTGTGGCGCAAACGCGCCCCGATACGGAAC
AAACCCACCACAGCGAGGAAAGTCCAAAGCAAGTACTTCCGCCAACAATC
GCACCGCCTGTACTGGAACAAGAAGCAGAACTGCTCGAAGCAGGTGTATC
GCACAACGATACATCCGTTCCCGCGTCGAAGGTGCTCAGCTCCAAGCCAC
CACGTCCGAAAAAGCAGTCTACTTGCGTTGAAGGTTCATACGAAGCACTG
ATGAAAGCATCCTCTACCGATTTGCAGCAGACCAAGCAGGGTGGAAGTAG
AATGGGAGGAAGTTCTTCAGGCAATGATAGTATCTCGCAACAGAGAACTG
CATCCCGCTCGCAGAACGGGCCGGAACTAACAGATGGGTCTTTTGAGTCA
GCGCTCCGAGACGGAACTGCTACCGCGCGATACCCTCCCAAGCCAACTTT
GAGCAGTGCTGATGGTTCGAATCAGCTAAGTACATCGCCCACCTCGGCGT
TTCCATCCTCTGCAAACCCGAAACATTTGACAAGGCGAAGTTCTATGCCG
GTACAGGCAATGACTATCCATGCTCCGGATGCTGATGATGGAGGCTTTTC
ACAAAATCCGGAGAAGCATGCGGTGCAGGGCAGCGCATTTGCCTACACGT
CAACCGCCAAACGAACGATTGGGCGGCCACAAGGACCTTCTAAAGGCCCT
CACGTAGGAAACCCTGTTCTCTCGAAGGCAAAGAGCGCGGTAGAAAGGCC
CAACTCCGTACAAGCGGCACAAGGAAGCGCGTTCCAACGAGAAGGCTTGT
GCACGAAAACGAGAAGAAAGCCCCGTGACACGAGCGCAACAACTCTAGGA
CCACGTACTGTTCCGGTATCTAGGACTGCCCAGCAAGGTAACACAAGTGA
AGTTTCTAATGTGAATCCACCGAATAGAGCCGGTGGAGGTGCTGCGGTAG
GAGGAAGCTGCATGTTAGCGGAAGGTACTATGAAAAAGAGGCGGGGAAGG
AGACCGATTCACGATAACTAG
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Coding sequence (CDS) from alignment at tig00000904_pilon:356652..358022+

>Ggra10601.t1 ID=Ggra10601.t1|Name=Ggra10601.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000904_pilon:356652..358022+ (Gracilaria gracilis GNS1m male)
ATGGTGTTCATTGCAATTGGGGCGATTAAGGCCGCCAAAGCCGCGAAGAG
GGAATACGACAAGGACAAGAAACGCTCACAAATCATCGCACCACTAGATA
ACTCTCGTCGCAATGAGTTCGACAATGCTCCTGCGTCTGCCTCTCCGGAA
TGGTGGACCTCTGATCAGGCCCCAGAAACAGAACCACAACAACCACAAGT
TTCGCACAACTCCTTTGGTGCCTGGAGCCGAGACCAGCTTATAGAACATG
TTGCCGAGCAGCAAGCAAGACAAGAGGAATACGATGTAAGGTTTCGTGAA
CAGCTCTCCAATTCTTCTGCTTCACTTGGTTCTAGCCGTGTACCTTCTGC
CTCTCATTCACCTGCTCTGGCTGTGGCGCAAACGCGCCCCGATACGGAAC
AAACCCACCACAGCGAGGAAAGTCCAAAGCAAGTACTTCCGCCAACAATC
GCACCGCCTGTACTGGAACAAGAAGCAGAACTGCTCGAAGCAGGTGTATC
GCACAACGATACATCCGTTCCCGCGTCGAAGGTGCTCAGCTCCAAGCCAC
CACGTCCGAAAAAGCAGTCTACTTGCGTTGAAGGTTCATACGAAGCACTG
ATGAAAGCATCCTCTACCGATTTGCAGCAGACCAAGCAGGGTGGAAGTAG
AATGGGAGGAAGTTCTTCAGGCAATGATAGTATCTCGCAACAGAGAACTG
CATCCCGCTCGCAGAACGGGCCGGAACTAACAGATGGGTCTTTTGAGTCA
GCGCTCCGAGACGGAACTGCTACCGCGCGATACCCTCCCAAGCCAACTTT
GAGCAGTGCTGATGGTTCGAATCAGCTAAGTACATCGCCCACCTCGGCGT
TTCCATCCTCTGCAAACCCGAAACATTTGACAAGGCGAAGTTCTATGCCG
GTACAGGCAATGACTATCCATGCTCCGGATGCTGATGATGGAGGCTTTTC
ACAAAATCCGGAGAAGCATGCGGTGCAGGGCAGCGCATTTGCCTACACGT
CAACCGCCAAACGAACGATTGGGCGGCCACAAGGACCTTCTAAAGGCCCT
CACGTAGGAAACCCTGTTCTCTCGAAGGCAAAGAGCGCGGTAGAAAGGCC
CAACTCCGTACAAGCGGCACAAGGAAGCGCGTTCCAACGAGAAGGCTTGT
GCACGAAAACGAGAAGAAAGCCCCGTGACACGAGCGCAACAACTCTAGGA
CCACGTACTGTTCCGGTATCTAGGACTGCCCAGCAAGGTAACACAAGTGA
AGTTTCTAATGTGAATCCACCGAATAGAGCCGGTGGAGGTGCTGCGGTAG
GAGGAAGCTGCATGTTAGCGGAAGGTACTATGAAAAAGAGGCGGGGAAGG
AGACCGATTCACGATAACTAG
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