Ggra10593.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10593.t1
Unique Name	Ggra10593.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	258

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10593	Ggra10593	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 338610..339600 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10593.t1	Ggra10593.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 338610..339600 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10593.t1.start1	Ggra10593.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 338610..338612 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10593.t1.CDS1	Ggra10593.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 338610..338687 +
Ggra10593.t1.CDS2	Ggra10593.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 338787..339436 +
Ggra10593.t1.CDS3	Ggra10593.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 339555..339600 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10593.t1.exon1	Ggra10593.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 338610..338687 +
Ggra10593.t1.exon2	Ggra10593.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 338787..339436 +
Ggra10593.t1.exon3	Ggra10593.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 339555..339600 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10593.t1.intron1	Ggra10593.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000904_pilon 338688..338786 +
Ggra10593.t1.intron2	Ggra10593.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000904_pilon 339437..339554 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10593.t1.stop1	Ggra10593.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 339598..339600 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:338610..339600+
coding sequence from alignment at tig00000904_pilon:338610..339600+

mRNA sequence

>Ggra10593.t1 ID=Ggra10593.t1|Name=Ggra10593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MWPLNQSNQSTALVCALPKLPPSTRLVASRIDTDHSTGKGKFALTGRYAS
KKDSFGIDAAYAIDDSNTVYATYGVTDEKLLSFGLETGFSAFERRATVDL
TYSPPKDAAALKAAVRQGKFKLSAFFSFDNFKKDNVQNHAERYEVEAKIS
GVENLKIGFDGKSRAAKIKLSHKLDSKNKLDAEYHHLAGGSKAVVFTLKH
AYSKSHTFALGFNYGANKCKAEWDCKTDNGPWTITTNFPFNASPLSGDLS
IKRRFDF*

spliced messenger RNA

>Ggra10593.t1 ID=Ggra10593.t1|Name=Ggra10593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000904_pilon:338610..339600+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCCTTTGAACCAATCCAACCAGTCCACCGCCCTCGTGTGCGCGCT
CCCAAAGCTCCCGCCCTCTACGCGTTTGGTCGCTTCTCGCATTGATACCG
ACCACTCCACGGGCAAGGGCAAGTTTGCCTTGACAGGGCGCTACGCTTCG
AAGAAGGACTCGTTTGGAATAGATGCCGCTTATGCCATCGATGACTCCAA
TACCGTCTATGCTACCTACGGCGTTACCGATGAAAAGCTGCTCTCTTTTG
GCCTTGAAACCGGCTTTTCCGCCTTCGAGCGTCGCGCAACCGTCGACCTT
ACGTACAGCCCGCCAAAGGATGCTGCCGCATTGAAAGCCGCCGTGCGTCA
GGGCAAGTTCAAACTGTCTGCTTTCTTCTCCTTCGACAACTTCAAAAAGG
ATAACGTGCAGAACCATGCGGAGCGCTACGAAGTAGAAGCAAAGATCAGC
GGCGTCGAGAACCTCAAGATTGGTTTTGATGGAAAGTCTCGCGCCGCTAA
GATTAAGCTGTCCCATAAACTCGATTCCAAGAATAAGCTGGATGCTGAAT
ACCATCACCTGGCTGGCGGTTCAAAGGCTGTCGTGTTCACTTTGAAGCAC
GCCTATTCCAAGTCACATACATTCGCACTCGGCTTCAATTATGGCGCCAA
CAAGTGCAAGGCTGAGTGGGATTGTAAGACTGACAATGGTCCATGGACCA
TCACAACCAATTTCCCTTTCAATGCGAGTCCATTATCTGGAGACTTGTCT
ATCAAACGCCGATTCGATTTCTAA

protein sequence of Ggra10593.t1

>Ggra10593.t1 ID=Ggra10593.t1|Name=Ggra10593.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MWPLNQSNQSTALVCALPKLPPSTRLVASRIDTDHSTGKGKFALTGRYAS
KKDSFGIDAAYAIDDSNTVYATYGVTDEKLLSFGLETGFSAFERRATVDL
TYSPPKDAAALKAAVRQGKFKLSAFFSFDNFKKDNVQNHAERYEVEAKIS
GVENLKIGFDGKSRAAKIKLSHKLDSKNKLDAEYHHLAGGSKAVVFTLKH
AYSKSHTFALGFNYGANKCKAEWDCKTDNGPWTITTNFPFNASPLSGDLS
IKRRFDF*

mRNA from alignment at tig00000904_pilon:338610..339600+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10593.t1 ID=Ggra10593.t1|Name=Ggra10593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=991bp|location=Sequence derived from alignment at tig00000904_pilon:338610..339600+ (Gracilaria gracilis GNS1m male)
ATGTGGCCTTTGAACCAATCCAACCAGTCCACCGCCCTCGTGTGCGCGCT
CCCAAAGCTCCCGCCCTCTACGCGTTTGGTACGCTTTTTGATCCTCTTCT
CGCTTGCGTGCTTTCTTTCTCCCTCCCCCCCTCCCCACCGCCTTCTGACA
CCGACCTCTTCTGTCGCTGCTGCATAGGTCGCTTCTCGCATTGATACCGA
CCACTCCACGGGCAAGGGCAAGTTTGCCTTGACAGGGCGCTACGCTTCGA
AGAAGGACTCGTTTGGAATAGATGCCGCTTATGCCATCGATGACTCCAAT
ACCGTCTATGCTACCTACGGCGTTACCGATGAAAAGCTGCTCTCTTTTGG
CCTTGAAACCGGCTTTTCCGCCTTCGAGCGTCGCGCAACCGTCGACCTTA
CGTACAGCCCGCCAAAGGATGCTGCCGCATTGAAAGCCGCCGTGCGTCAG
GGCAAGTTCAAACTGTCTGCTTTCTTCTCCTTCGACAACTTCAAAAAGGA
TAACGTGCAGAACCATGCGGAGCGCTACGAAGTAGAAGCAAAGATCAGCG
GCGTCGAGAACCTCAAGATTGGTTTTGATGGAAAGTCTCGCGCCGCTAAG
ATTAAGCTGTCCCATAAACTCGATTCCAAGAATAAGCTGGATGCTGAATA
CCATCACCTGGCTGGCGGTTCAAAGGCTGTCGTGTTCACTTTGAAGCACG
CCTATTCCAAGTCACATACATTCGCACTCGGCTTCAATTATGGCGCCAAC
AAGTGCAAGGCTGAGTGGGATTGTAAGACTGACAATGGTCCATGGACCAT
CACAACCAATTTCCCTTTCAATGCGAGGTACGTTTCAATTTCCGCTTGTT
TACGTTGCACCACAAGCTCCCCATACGCTGTATATTGTTCCGATTTCACT
CACCATTTCTTTTCTATTGCAACTACTTGCTTACATGTTACGTAGTCCAT
TATCTGGAGACTTGTCTATCAAACGCCGATTCGATTTCTAA

Coding sequence (CDS) from alignment at tig00000904_pilon:338610..339600+

>Ggra10593.t1 ID=Ggra10593.t1|Name=Ggra10593.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000904_pilon:338610..339600+ (Gracilaria gracilis GNS1m male)
ATGTGGCCTTTGAACCAATCCAACCAGTCCACCGCCCTCGTGTGCGCGCT
CCCAAAGCTCCCGCCCTCTACGCGTTTGGTCGCTTCTCGCATTGATACCG
ACCACTCCACGGGCAAGGGCAAGTTTGCCTTGACAGGGCGCTACGCTTCG
AAGAAGGACTCGTTTGGAATAGATGCCGCTTATGCCATCGATGACTCCAA
TACCGTCTATGCTACCTACGGCGTTACCGATGAAAAGCTGCTCTCTTTTG
GCCTTGAAACCGGCTTTTCCGCCTTCGAGCGTCGCGCAACCGTCGACCTT
ACGTACAGCCCGCCAAAGGATGCTGCCGCATTGAAAGCCGCCGTGCGTCA
GGGCAAGTTCAAACTGTCTGCTTTCTTCTCCTTCGACAACTTCAAAAAGG
ATAACGTGCAGAACCATGCGGAGCGCTACGAAGTAGAAGCAAAGATCAGC
GGCGTCGAGAACCTCAAGATTGGTTTTGATGGAAAGTCTCGCGCCGCTAA
GATTAAGCTGTCCCATAAACTCGATTCCAAGAATAAGCTGGATGCTGAAT
ACCATCACCTGGCTGGCGGTTCAAAGGCTGTCGTGTTCACTTTGAAGCAC
GCCTATTCCAAGTCACATACATTCGCACTCGGCTTCAATTATGGCGCCAA
CAAGTGCAAGGCTGAGTGGGATTGTAAGACTGACAATGGTCCATGGACCA
TCACAACCAATTTCCCTTTCAATGCGAGTCCATTATCTGGAGACTTGTCT
ATCAAACGCCGATTCGATTTCTAA