Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005703947.1 |
| PFAMs | DFRP_C |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.53e-25 |
| EggNOG OGs | 2A62M@1|root,2RYB1@2759|Eukaryota |
| Description | DRG Family Regulatory Proteins, Tma46 |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10589.t1.start1 | Ggra10589.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 327669..327671 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10589.t1.stop1 | Ggra10589.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 328422..328424 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MPPKKKKAEEQKKKIVDDKTFGLKNKKKSRKVQQYVETVKKQANQKVDGP
RKRSAGAGSSSAASNARLAQMQARLAELELMNQPVKDKPKKMSAEEAERK
RLEEEAEKERIRIANLPVEDQIEEERAKLTTRTPVTKELFLVWKEEKMSE
KKAAEEAKKAVAYKKMSKAERSRGQGLTGRELFQANADIFVDDEEADDTV
LKADNDYTGSDDENHATLSDVQPDAALFEGEADGGLPESAEVTVGDESLF
T* back to topspliced messenger RNA >Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000904_pilon:327669..328424+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCTCCGAAGAAAAAAAAGGCCGAAGAGCAGAAGAAGAAAATAGTCGA
CGACAAGACTTTTGGGCTCAAGAACAAGAAAAAGAGTCGCAAGGTTCAGC
AATATGTGGAAACTGTTAAGAAGCAGGCAAATCAGAAGGTTGACGGTCCG
CGAAAGAGGTCGGCCGGTGCAGGGTCTTCTTCGGCTGCGAGCAATGCCCG
CCTCGCCCAAATGCAGGCTCGACTCGCAGAGCTTGAGCTCATGAACCAAC
CTGTGAAGGACAAGCCGAAGAAGATGTCTGCTGAAGAGGCAGAGCGTAAG
CGACTCGAAGAGGAAGCTGAGAAGGAAAGAATTCGAATCGCTAATCTACC
TGTAGAGGACCAGATTGAAGAGGAGCGAGCAAAGCTTACCACACGTACTC
CGGTCACCAAGGAACTCTTCCTCGTATGGAAAGAAGAGAAAATGAGCGAG
AAAAAAGCTGCGGAAGAAGCAAAGAAAGCTGTTGCTTACAAGAAGATGTC
CAAAGCGGAGAGGTCTAGGGGTCAGGGCTTAACTGGGAGGGAACTGTTTC
AGGCTAATGCTGATATCTTCGTTGACGACGAAGAGGCGGACGATACTGTA
CTTAAAGCCGATAATGATTATACCGGATCCGACGACGAAAATCATGCTAC
CCTCTCTGACGTGCAACCAGATGCGGCTTTGTTCGAAGGGGAGGCTGATG
GTGGTTTACCTGAGTCGGCTGAGGTCACGGTTGGCGACGAATCTTTATTC
ACTTAG back to topprotein sequence of Ggra10589.t1 >Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MPPKKKKAEEQKKKIVDDKTFGLKNKKKSRKVQQYVETVKKQANQKVDGP
RKRSAGAGSSSAASNARLAQMQARLAELELMNQPVKDKPKKMSAEEAERK
RLEEEAEKERIRIANLPVEDQIEEERAKLTTRTPVTKELFLVWKEEKMSE
KKAAEEAKKAVAYKKMSKAERSRGQGLTGRELFQANADIFVDDEEADDTV
LKADNDYTGSDDENHATLSDVQPDAALFEGEADGGLPESAEVTVGDESLF
T* back to topmRNA from alignment at tig00000904_pilon:327669..328424+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000904_pilon:327669..328424+ (Gracilaria gracilis GNS1m male)
ATGCCTCCGAAGAAAAAAAAGGCCGAAGAGCAGAAGAAGAAAATAGTCGA
CGACAAGACTTTTGGGCTCAAGAACAAGAAAAAGAGTCGCAAGGTTCAGC
AATATGTGGAAACTGTTAAGAAGCAGGCAAATCAGAAGGTTGACGGTCCG
CGAAAGAGGTCGGCCGGTGCAGGGTCTTCTTCGGCTGCGAGCAATGCCCG
CCTCGCCCAAATGCAGGCTCGACTCGCAGAGCTTGAGCTCATGAACCAAC
CTGTGAAGGACAAGCCGAAGAAGATGTCTGCTGAAGAGGCAGAGCGTAAG
CGACTCGAAGAGGAAGCTGAGAAGGAAAGAATTCGAATCGCTAATCTACC
TGTAGAGGACCAGATTGAAGAGGAGCGAGCAAAGCTTACCACACGTACTC
CGGTCACCAAGGAACTCTTCCTCGTATGGAAAGAAGAGAAAATGAGCGAG
AAAAAAGCTGCGGAAGAAGCAAAGAAAGCTGTTGCTTACAAGAAGATGTC
CAAAGCGGAGAGGTCTAGGGGTCAGGGCTTAACTGGGAGGGAACTGTTTC
AGGCTAATGCTGATATCTTCGTTGACGACGAAGAGGCGGACGATACTGTA
CTTAAAGCCGATAATGATTATACCGGATCCGACGACGAAAATCATGCTAC
CCTCTCTGACGTGCAACCAGATGCGGCTTTGTTCGAAGGGGAGGCTGATG
GTGGTTTACCTGAGTCGGCTGAGGTCACGGTTGGCGACGAATCTTTATTC
ACTTAG back to topCoding sequence (CDS) from alignment at tig00000904_pilon:327669..328424+ >Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000904_pilon:327669..328424+ (Gracilaria gracilis GNS1m male)
ATGCCTCCGAAGAAAAAAAAGGCCGAAGAGCAGAAGAAGAAAATAGTCGA
CGACAAGACTTTTGGGCTCAAGAACAAGAAAAAGAGTCGCAAGGTTCAGC
AATATGTGGAAACTGTTAAGAAGCAGGCAAATCAGAAGGTTGACGGTCCG
CGAAAGAGGTCGGCCGGTGCAGGGTCTTCTTCGGCTGCGAGCAATGCCCG
CCTCGCCCAAATGCAGGCTCGACTCGCAGAGCTTGAGCTCATGAACCAAC
CTGTGAAGGACAAGCCGAAGAAGATGTCTGCTGAAGAGGCAGAGCGTAAG
CGACTCGAAGAGGAAGCTGAGAAGGAAAGAATTCGAATCGCTAATCTACC
TGTAGAGGACCAGATTGAAGAGGAGCGAGCAAAGCTTACCACACGTACTC
CGGTCACCAAGGAACTCTTCCTCGTATGGAAAGAAGAGAAAATGAGCGAG
AAAAAAGCTGCGGAAGAAGCAAAGAAAGCTGTTGCTTACAAGAAGATGTC
CAAAGCGGAGAGGTCTAGGGGTCAGGGCTTAACTGGGAGGGAACTGTTTC
AGGCTAATGCTGATATCTTCGTTGACGACGAAGAGGCGGACGATACTGTA
CTTAAAGCCGATAATGATTATACCGGATCCGACGACGAAAATCATGCTAC
CCTCTCTGACGTGCAACCAGATGCGGCTTTGTTCGAAGGGGAGGCTGATG
GTGGTTTACCTGAGTCGGCTGAGGTCACGGTTGGCGACGAATCTTTATTC
ACTTAG back to top
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