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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 112098.XP_008606188.1 |
| PFAMs | DFP |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00064,RC00090 |
| KEGG ko | ko:K01922,ko:K03128 |
| KEGG Reaction | R04230 |
| KEGG Pathway | ko00770,ko01100,ko03022,map00770,map01100,map03022 |
| KEGG Module | M00120 |
| GOs | GO:0003674,GO:0003824,GO:0004632,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 |
| Evalue | 1.61e-60 |
| EggNOG OGs | COG0452@1|root,KOG2728@2759|Eukaryota |
| EC | 6.3.2.51 |
| Description | phosphopantothenate--cysteine ligase activity |
| COG category | H |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10585.t1.start1 | Ggra10585.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 320679..320681 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10585.t1.intron1 | Ggra10585.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000904_pilon 321384..321469 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10585.t1.stop1 | Ggra10585.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 321695..321697 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp
MGDPLPSFQVFGTTVIAEAFERPKLEAFVRRAKNENLKIAVITSGGTSVP
LEQRAVRYLDNFSTGTRGARSAENFLIQRDQGHGGLSFKENAYAVVFLCR
EGSKLPFIQDISPQRIADLSQISDSEVKFQDKSMATALKKWKETQRRLFL
VTYKTVQEYLFSLFAVAQILRPLGKSVLFFLAAAVSDFYITSDRLPEHKI
QSKGEDLVITLSRVPKCLGLLRQEWAPEAFIISFKLETDSDLLAKKSGAA
LQNYGMNCVIGNLLQTRYQEVLIVDADGQRVLKSRNEDECLEATLVTELA
IMHERHIGTG* back to topspliced messenger RNA >Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000904_pilon:320679..321697+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGGATCCCCTCCCGTCTTTCCAAGTGTTTGGAACCACTGTTATTGC
AGAAGCTTTTGAAAGACCGAAGCTTGAAGCATTTGTTCGTCGCGCAAAAA
ATGAAAACCTTAAGATCGCCGTGATCACGTCTGGGGGCACATCGGTTCCT
TTAGAACAACGTGCTGTGAGGTATCTTGACAATTTCAGCACAGGTACCCG
AGGGGCTAGGTCCGCCGAAAATTTCCTGATACAGCGGGATCAAGGACATG
GGGGGTTAAGCTTCAAAGAAAATGCGTACGCTGTTGTCTTCTTGTGTCGA
GAAGGTTCGAAACTTCCTTTCATTCAAGATATATCTCCGCAAAGAATAGC
AGACTTAAGTCAAATATCAGACAGTGAAGTGAAATTCCAAGACAAATCCA
TGGCGACAGCATTGAAAAAATGGAAAGAGACACAACGTCGCCTGTTCTTA
GTCACTTACAAAACAGTTCAAGAGTATCTCTTTAGCTTATTTGCAGTGGC
ACAAATTCTGAGGCCGTTGGGGAAATCAGTTCTTTTCTTTCTGGCCGCCG
CTGTATCAGACTTTTACATCACTTCTGATCGGCTTCCTGAGCACAAAATC
CAGTCAAAAGGGGAAGACTTAGTAATTACTTTGAGTCGAGTTCCAAAATG
TCTCGGTTTGCTTCGGCAAGAATGGGCTCCTGAGGCTTTCATTATCTCCT
TCAAGCTCGAAACAGATTCAGACCTCTTAGCCAAAAAGTCAGGGGCTGCA
CTTCAAAATTATGGGATGAATTGTGTTATCGGGAACTTATTACAGACTAG
ATACCAAGAAGTGCTGATTGTCGACGCAGATGGCCAGCGAGTACTCAAGA
GCAGAAATGAGGATGAATGCTTGGAAGCGACGTTGGTGACTGAACTTGCG
ATAATGCATGAACGTCACATTGGGACTGGCTAA back to topprotein sequence of Ggra10585.t1 >Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MGDPLPSFQVFGTTVIAEAFERPKLEAFVRRAKNENLKIAVITSGGTSVP
LEQRAVRYLDNFSTGTRGARSAENFLIQRDQGHGGLSFKENAYAVVFLCR
EGSKLPFIQDISPQRIADLSQISDSEVKFQDKSMATALKKWKETQRRLFL
VTYKTVQEYLFSLFAVAQILRPLGKSVLFFLAAAVSDFYITSDRLPEHKI
QSKGEDLVITLSRVPKCLGLLRQEWAPEAFIISFKLETDSDLLAKKSGAA
LQNYGMNCVIGNLLQTRYQEVLIVDADGQRVLKSRNEDECLEATLVTELA
IMHERHIGTG* back to topmRNA from alignment at tig00000904_pilon:320679..321697+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1019bp|location=Sequence derived from alignment at tig00000904_pilon:320679..321697+ (Gracilaria gracilis GNS1m male)
ATGGGGGATCCCCTCCCGTCTTTCCAAGTGTTTGGAACCACTGTTATTGC
AGAAGCTTTTGAAAGACCGAAGCTTGAAGCATTTGTTCGTCGCGCAAAAA
ATGAAAACCTTAAGATCGCCGTGATCACGTCTGGGGGCACATCGGTTCCT
TTAGAACAACGTGCTGTGAGGTATCTTGACAATTTCAGCACAGGTACCCG
AGGGGCTAGGTCCGCCGAAAATTTCCTGATACAGCGGGATCAAGGACATG
GGGGGTTAAGCTTCAAAGAAAATGCGTACGCTGTTGTCTTCTTGTGTCGA
GAAGGTTCGAAACTTCCTTTCATTCAAGATATATCTCCGCAAAGAATAGC
AGACTTAAGTCAAATATCAGACAGTGAAGTGAAATTCCAAGACAAATCCA
TGGCGACAGCATTGAAAAAATGGAAAGAGACACAACGTCGCCTGTTCTTA
GTCACTTACAAAACAGTTCAAGAGTATCTCTTTAGCTTATTTGCAGTGGC
ACAAATTCTGAGGCCGTTGGGGAAATCAGTTCTTTTCTTTCTGGCCGCCG
CTGTATCAGACTTTTACATCACTTCTGATCGGCTTCCTGAGCACAAAATC
CAGTCAAAAGGGGAAGACTTAGTAATTACTTTGAGTCGAGTTCCAAAATG
TCTCGGTTTGCTTCGGCAAGAATGGGCTCCTGAGGCTTTCATTATCTCCT
TCAAGGTAAGTCTTGCGCAACTGCCAGTAAACTTTTTGGCTCTCGCGATG
ACTAACCTGTATACACTCGCGTGTTGTCCGAATGATCATAGCTCGAAACA
GATTCAGACCTCTTAGCCAAAAAGTCAGGGGCTGCACTTCAAAATTATGG
GATGAATTGTGTTATCGGGAACTTATTACAGACTAGATACCAAGAAGTGC
TGATTGTCGACGCAGATGGCCAGCGAGTACTCAAGAGCAGAAATGAGGAT
GAATGCTTGGAAGCGACGTTGGTGACTGAACTTGCGATAATGCATGAACG
TCACATTGGGACTGGCTAA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:320679..321697+ >Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000904_pilon:320679..321697+ (Gracilaria gracilis GNS1m male)
ATGGGGGATCCCCTCCCGTCTTTCCAAGTGTTTGGAACCACTGTTATTGC
AGAAGCTTTTGAAAGACCGAAGCTTGAAGCATTTGTTCGTCGCGCAAAAA
ATGAAAACCTTAAGATCGCCGTGATCACGTCTGGGGGCACATCGGTTCCT
TTAGAACAACGTGCTGTGAGGTATCTTGACAATTTCAGCACAGGTACCCG
AGGGGCTAGGTCCGCCGAAAATTTCCTGATACAGCGGGATCAAGGACATG
GGGGGTTAAGCTTCAAAGAAAATGCGTACGCTGTTGTCTTCTTGTGTCGA
GAAGGTTCGAAACTTCCTTTCATTCAAGATATATCTCCGCAAAGAATAGC
AGACTTAAGTCAAATATCAGACAGTGAAGTGAAATTCCAAGACAAATCCA
TGGCGACAGCATTGAAAAAATGGAAAGAGACACAACGTCGCCTGTTCTTA
GTCACTTACAAAACAGTTCAAGAGTATCTCTTTAGCTTATTTGCAGTGGC
ACAAATTCTGAGGCCGTTGGGGAAATCAGTTCTTTTCTTTCTGGCCGCCG
CTGTATCAGACTTTTACATCACTTCTGATCGGCTTCCTGAGCACAAAATC
CAGTCAAAAGGGGAAGACTTAGTAATTACTTTGAGTCGAGTTCCAAAATG
TCTCGGTTTGCTTCGGCAAGAATGGGCTCCTGAGGCTTTCATTATCTCCT
TCAAGCTCGAAACAGATTCAGACCTCTTAGCCAAAAAGTCAGGGGCTGCA
CTTCAAAATTATGGGATGAATTGTGTTATCGGGAACTTATTACAGACTAG
ATACCAAGAAGTGCTGATTGTCGACGCAGATGGCCAGCGAGTACTCAAGA
GCAGAAATGAGGATGAATGCTTGGAAGCGACGTTGGTGACTGAACTTGCG
ATAATGCATGAACGTCACATTGGGACTGGCTAA back to top
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