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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 80637.XP_007772270.1 |
| Preferred name | DPH2 |
| PFAMs | Diphthamide_syn |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K17866 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765 |
| Evalue | 2.57e-64 |
| EggNOG OGs | COG1736@1|root,KOG2648@2759|Eukaryota,38FXZ@33154|Opisthokonta,3NUDH@4751|Fungi,3UY4R@5204|Basidiomycota,224BM@155619|Agaricomycetes |
| Description | Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2 |
| COG category | J |
| BRITE | ko00000,ko03012 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10584.t1.stop1 | Ggra10584.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 318359..318361 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10584.t1.start1 | Ggra10584.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 319886..319888 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MPGVSDDVFQSIDCWLPVSPGPSELSAKRWEEVIDGYHVKRTAELIRNYA
NGKACHVALQFPDHMLHVGPFICEALRLSTNACDGDHEDSPTINFFLLGD
TSYGECCVDEVAAQHLFCDLVVHYGNACLSPTRTLPVLYVFPKTTFEYPE
DACTKVRESLLELAHSADTQKVIILYDLDLESCFANNRFQAGEHQVTFAS
LEVEIQVAALQIRNADTVRAPGTNRTSSDGDETVVGPHVIHFGAVPADKV
AFVWYTRCVEDGEYPPLLRNAAIQLCSGTSNSSRKFFSVSLVGERGDSVQ
LIEPSRILRKRFASIGKIQAAERIGIIPGTLGVSGNTDIIERCKVLVKLA
GKRSYVILVGKPNPVKLANFPEIDVFVLVACPQNGLIDHKEYLRPIVTPF
ELEAAILRDGDIFSTTYTLDFQELLKHKLCNAVDSEEENQLIARNSDWSL
AVSGDGSGADYLKKRHWQGLNYGGGGSDDETRIEQLPTHIESGESGIARG
YSRERNTNP* back to topspliced messenger RNA >Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000904_pilon:318359..319888- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCTGGAGTTTCGGACGATGTTTTTCAATCCATAGACTGTTGGTTACC
TGTTTCTCCCGGGCCAAGCGAATTAAGTGCGAAGAGATGGGAGGAAGTTA
TTGACGGCTATCACGTGAAGAGGACTGCAGAATTGATTAGGAACTATGCA
AACGGAAAGGCCTGCCATGTTGCGCTGCAGTTCCCTGATCACATGTTGCA
TGTAGGACCGTTCATTTGTGAAGCCCTACGTTTGTCAACCAATGCATGTG
ATGGAGACCACGAAGACAGTCCGACCATTAATTTCTTCCTGCTTGGAGAT
ACATCCTATGGGGAATGCTGCGTAGACGAAGTTGCAGCGCAACACCTTTT
CTGTGACCTTGTTGTACACTATGGAAACGCCTGTCTATCTCCAACCAGAA
CTTTGCCGGTATTGTACGTGTTTCCCAAGACAACCTTCGAGTATCCCGAA
GATGCCTGCACCAAGGTTAGGGAAAGCCTTTTAGAGCTTGCTCACAGCGC
AGACACCCAGAAAGTTATTATTCTCTACGATCTGGATCTCGAAAGTTGTT
TTGCGAACAACAGATTTCAAGCTGGGGAGCATCAAGTTACATTTGCAAGT
CTCGAAGTTGAAATTCAAGTCGCTGCGCTTCAAATACGTAATGCTGATAC
TGTCAGGGCACCTGGTACCAACAGAACAAGTAGCGACGGTGACGAGACAG
TAGTTGGGCCTCATGTGATCCACTTTGGGGCGGTACCAGCGGACAAAGTA
GCGTTCGTCTGGTACACTCGATGCGTGGAGGACGGTGAATATCCGCCATT
ACTTCGAAATGCAGCCATCCAATTGTGCTCGGGAACGTCTAACTCGTCAC
GCAAGTTCTTCTCTGTATCTCTTGTTGGGGAACGAGGTGATTCAGTCCAA
CTGATTGAACCTTCGAGAATCTTGAGGAAGCGCTTTGCTTCCATAGGGAA
AATACAAGCAGCAGAGAGAATTGGAATCATCCCAGGAACATTAGGTGTTT
CCGGGAACACTGACATAATTGAAAGATGCAAAGTGCTTGTTAAACTTGCT
GGAAAACGCTCTTATGTGATCCTTGTGGGGAAGCCGAACCCCGTTAAGCT
AGCGAACTTCCCTGAAATCGACGTTTTCGTACTCGTGGCATGTCCACAAA
ATGGGTTAATAGACCATAAAGAATATTTGCGACCTATCGTAACCCCGTTT
GAACTAGAGGCAGCCATTCTCAGGGATGGGGATATATTCAGTACCACATA
TACTTTGGACTTCCAGGAACTATTGAAGCACAAGCTTTGCAACGCTGTGG
ATTCCGAAGAAGAAAACCAGTTAATCGCCAGAAACAGCGACTGGTCGCTC
GCAGTAAGTGGTGACGGTAGCGGTGCAGATTACCTGAAGAAGAGGCATTG
GCAAGGTCTGAATTATGGAGGCGGTGGCTCTGATGATGAAACTAGAATAG
AACAGCTTCCTACTCATATCGAAAGTGGGGAATCCGGAATCGCTAGAGGC
TACAGCAGGGAGCGGAATACGAATCCTTAG back to topprotein sequence of Ggra10584.t1 >Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MPGVSDDVFQSIDCWLPVSPGPSELSAKRWEEVIDGYHVKRTAELIRNYA
NGKACHVALQFPDHMLHVGPFICEALRLSTNACDGDHEDSPTINFFLLGD
TSYGECCVDEVAAQHLFCDLVVHYGNACLSPTRTLPVLYVFPKTTFEYPE
DACTKVRESLLELAHSADTQKVIILYDLDLESCFANNRFQAGEHQVTFAS
LEVEIQVAALQIRNADTVRAPGTNRTSSDGDETVVGPHVIHFGAVPADKV
AFVWYTRCVEDGEYPPLLRNAAIQLCSGTSNSSRKFFSVSLVGERGDSVQ
LIEPSRILRKRFASIGKIQAAERIGIIPGTLGVSGNTDIIERCKVLVKLA
GKRSYVILVGKPNPVKLANFPEIDVFVLVACPQNGLIDHKEYLRPIVTPF
ELEAAILRDGDIFSTTYTLDFQELLKHKLCNAVDSEEENQLIARNSDWSL
AVSGDGSGADYLKKRHWQGLNYGGGGSDDETRIEQLPTHIESGESGIARG
YSRERNTNP* back to topmRNA from alignment at tig00000904_pilon:318359..319888- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000904_pilon:318359..319888- (Gracilaria gracilis GNS1m male)
ATGCCTGGAGTTTCGGACGATGTTTTTCAATCCATAGACTGTTGGTTACC
TGTTTCTCCCGGGCCAAGCGAATTAAGTGCGAAGAGATGGGAGGAAGTTA
TTGACGGCTATCACGTGAAGAGGACTGCAGAATTGATTAGGAACTATGCA
AACGGAAAGGCCTGCCATGTTGCGCTGCAGTTCCCTGATCACATGTTGCA
TGTAGGACCGTTCATTTGTGAAGCCCTACGTTTGTCAACCAATGCATGTG
ATGGAGACCACGAAGACAGTCCGACCATTAATTTCTTCCTGCTTGGAGAT
ACATCCTATGGGGAATGCTGCGTAGACGAAGTTGCAGCGCAACACCTTTT
CTGTGACCTTGTTGTACACTATGGAAACGCCTGTCTATCTCCAACCAGAA
CTTTGCCGGTATTGTACGTGTTTCCCAAGACAACCTTCGAGTATCCCGAA
GATGCCTGCACCAAGGTTAGGGAAAGCCTTTTAGAGCTTGCTCACAGCGC
AGACACCCAGAAAGTTATTATTCTCTACGATCTGGATCTCGAAAGTTGTT
TTGCGAACAACAGATTTCAAGCTGGGGAGCATCAAGTTACATTTGCAAGT
CTCGAAGTTGAAATTCAAGTCGCTGCGCTTCAAATACGTAATGCTGATAC
TGTCAGGGCACCTGGTACCAACAGAACAAGTAGCGACGGTGACGAGACAG
TAGTTGGGCCTCATGTGATCCACTTTGGGGCGGTACCAGCGGACAAAGTA
GCGTTCGTCTGGTACACTCGATGCGTGGAGGACGGTGAATATCCGCCATT
ACTTCGAAATGCAGCCATCCAATTGTGCTCGGGAACGTCTAACTCGTCAC
GCAAGTTCTTCTCTGTATCTCTTGTTGGGGAACGAGGTGATTCAGTCCAA
CTGATTGAACCTTCGAGAATCTTGAGGAAGCGCTTTGCTTCCATAGGGAA
AATACAAGCAGCAGAGAGAATTGGAATCATCCCAGGAACATTAGGTGTTT
CCGGGAACACTGACATAATTGAAAGATGCAAAGTGCTTGTTAAACTTGCT
GGAAAACGCTCTTATGTGATCCTTGTGGGGAAGCCGAACCCCGTTAAGCT
AGCGAACTTCCCTGAAATCGACGTTTTCGTACTCGTGGCATGTCCACAAA
ATGGGTTAATAGACCATAAAGAATATTTGCGACCTATCGTAACCCCGTTT
GAACTAGAGGCAGCCATTCTCAGGGATGGGGATATATTCAGTACCACATA
TACTTTGGACTTCCAGGAACTATTGAAGCACAAGCTTTGCAACGCTGTGG
ATTCCGAAGAAGAAAACCAGTTAATCGCCAGAAACAGCGACTGGTCGCTC
GCAGTAAGTGGTGACGGTAGCGGTGCAGATTACCTGAAGAAGAGGCATTG
GCAAGGTCTGAATTATGGAGGCGGTGGCTCTGATGATGAAACTAGAATAG
AACAGCTTCCTACTCATATCGAAAGTGGGGAATCCGGAATCGCTAGAGGC
TACAGCAGGGAGCGGAATACGAATCCTTAG back to topCoding sequence (CDS) from alignment at tig00000904_pilon:318359..319888- >Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000904_pilon:318359..319888- (Gracilaria gracilis GNS1m male)
ATGCCTGGAGTTTCGGACGATGTTTTTCAATCCATAGACTGTTGGTTACC
TGTTTCTCCCGGGCCAAGCGAATTAAGTGCGAAGAGATGGGAGGAAGTTA
TTGACGGCTATCACGTGAAGAGGACTGCAGAATTGATTAGGAACTATGCA
AACGGAAAGGCCTGCCATGTTGCGCTGCAGTTCCCTGATCACATGTTGCA
TGTAGGACCGTTCATTTGTGAAGCCCTACGTTTGTCAACCAATGCATGTG
ATGGAGACCACGAAGACAGTCCGACCATTAATTTCTTCCTGCTTGGAGAT
ACATCCTATGGGGAATGCTGCGTAGACGAAGTTGCAGCGCAACACCTTTT
CTGTGACCTTGTTGTACACTATGGAAACGCCTGTCTATCTCCAACCAGAA
CTTTGCCGGTATTGTACGTGTTTCCCAAGACAACCTTCGAGTATCCCGAA
GATGCCTGCACCAAGGTTAGGGAAAGCCTTTTAGAGCTTGCTCACAGCGC
AGACACCCAGAAAGTTATTATTCTCTACGATCTGGATCTCGAAAGTTGTT
TTGCGAACAACAGATTTCAAGCTGGGGAGCATCAAGTTACATTTGCAAGT
CTCGAAGTTGAAATTCAAGTCGCTGCGCTTCAAATACGTAATGCTGATAC
TGTCAGGGCACCTGGTACCAACAGAACAAGTAGCGACGGTGACGAGACAG
TAGTTGGGCCTCATGTGATCCACTTTGGGGCGGTACCAGCGGACAAAGTA
GCGTTCGTCTGGTACACTCGATGCGTGGAGGACGGTGAATATCCGCCATT
ACTTCGAAATGCAGCCATCCAATTGTGCTCGGGAACGTCTAACTCGTCAC
GCAAGTTCTTCTCTGTATCTCTTGTTGGGGAACGAGGTGATTCAGTCCAA
CTGATTGAACCTTCGAGAATCTTGAGGAAGCGCTTTGCTTCCATAGGGAA
AATACAAGCAGCAGAGAGAATTGGAATCATCCCAGGAACATTAGGTGTTT
CCGGGAACACTGACATAATTGAAAGATGCAAAGTGCTTGTTAAACTTGCT
GGAAAACGCTCTTATGTGATCCTTGTGGGGAAGCCGAACCCCGTTAAGCT
AGCGAACTTCCCTGAAATCGACGTTTTCGTACTCGTGGCATGTCCACAAA
ATGGGTTAATAGACCATAAAGAATATTTGCGACCTATCGTAACCCCGTTT
GAACTAGAGGCAGCCATTCTCAGGGATGGGGATATATTCAGTACCACATA
TACTTTGGACTTCCAGGAACTATTGAAGCACAAGCTTTGCAACGCTGTGG
ATTCCGAAGAAGAAAACCAGTTAATCGCCAGAAACAGCGACTGGTCGCTC
GCAGTAAGTGGTGACGGTAGCGGTGCAGATTACCTGAAGAAGAGGCATTG
GCAAGGTCTGAATTATGGAGGCGGTGGCTCTGATGATGAAACTAGAATAG
AACAGCTTCCTACTCATATCGAAAGTGGGGAATCCGGAATCGCTAGAGGC
TACAGCAGGGAGCGGAATACGAATCCTTAG back to top
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