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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005708581.1 |
| PFAMs | CRAL_TRIO,CRAL_TRIO_N |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00684 |
| KEGG ko | ko:K00133 |
| KEGG Reaction | R02291 |
| KEGG Pathway | ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 |
| KEGG Module | M00016,M00017,M00018,M00033,M00525,M00526,M00527 |
| Evalue | 4.67e-25 |
| EggNOG OGs | KOG1470@1|root,KOG1470@2759|Eukaryota |
| EC | 1.2.1.11 |
| Description | intermembrane phospholipid transfer |
| COG category | E |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10583.t1.start1 | Ggra10583.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 316892..316894 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10583.t1.stop1 | Ggra10583.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 318014..318016 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10583.t1 ID=Ggra10583.t1|Name=Ggra10583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MRRYIPFSGAPAASAAPPVRSSSPASRERSPLQSHSQLADAHTPPPTPQQ
DAPPSSPSSRSHLPHVSLPHVSLPHVPHVPVPHVNVHALPSMRRLFHTAS
SNDSQSMPAHTPLTELSVNVEEAFGPVGTPAPNVASMTHDCLLVELHESV
HSRRRVLVQFLRARQGNPHEAFAMMIHTFKWRQATDLHLYLSQNVINMLR
PNACFPLHIISDPDTCKQPVAYGLPRLLDKRKVDRAQFQNALLSFLESIY
FAHTYVLDEIVIILDFREWSIRRNAPYRLVKEGIQTLQEFYPDRLGYIFL
VNYPVTIRAAYTVVSPIIDPIAKEKIVWAAEDDPAVTLSKYIAPKSIPTF
LGGELETVFPATWPDVASEFDCNR* back to topspliced messenger RNA >Ggra10583.t1 ID=Ggra10583.t1|Name=Ggra10583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000904_pilon:316892..318016+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTCGGTACATACCGTTCTCGGGCGCGCCGGCCGCCTCTGCTGCGCC
GCCCGTGCGTTCTTCCTCGCCCGCGTCGCGAGAGCGCTCTCCACTTCAGT
CGCACTCCCAACTTGCGGACGCGCATAcgccgccgccgacgccgcagcag
gacgcaccgccttcctcgccgtcgtcgcGATCGCATCTGCCGCATGTTTC
GCTGCCGCATGTTTCGCTGCCGCATGTGCCGCACGTCCCCGTGCCGCACG
TTAACGTCCACGCGCTGCCGAGCATGCGCAGGTTGTTTCACACCGCCTCG
TCGAACGACTCCCAATCCATGCCGGCGCACACGCCGTTGACTGAGCTCAG
CGTAAACGTGGAGGAAGCGTTCGGACCTGTAGGCACACCTGCGCCTAACG
TTGCTTCAATGACGCATGATTGTCTCCTCGTTGAGCTTCATGAGAGTGTG
CATAGTCGCCGTCGTGTCCTCGTTCAGTTTCTCCGAGCGCGCCAGGGTAA
TCCCCATGAGGCCTTTGCCATGATGATCCACACCTTCAAGTGGCGCCAAG
CTACCGATTTGCACCTCTATCTTTCTCAGAATGTTATCAACATGCTCCGA
CCCAACGCTTGCTTCCCATTGCACATAATATCTGACCCTGACACTTGCAA
GCAACCTGTCGCCTATGGCCTCCCGCGCCTCCTCGACAAGAGAAAAGTCG
ACCGTGCGCAGTTCCAGAACGCTTTGCTATCATTTCTAGAGTCAATTTAT
TTTGCTCACACATATGTCTTGGATGAAATAGTCATTATCTTAGACTTCCG
CGAATGGTCAATCCGCCGGAATGCCCCTTACCGTCTTGTAAAAGAGGGCA
TCCAGACACTACAAGAGTTCTACCCGGACCGGTTGGGTTATATTTTCCTC
GTCAACTATCCGGTCACCATCCGAGCCGCCTACACCGTGGTAAGCCCAAT
CATAGACCCGATTGCCAAGGAGAAGATTGTCTGGGCTGCAGAGGATGACC
CCGCTGTTACTCTCAGCAAGTATATTGCACCGAAATCCATCCCTACTTTT
CTTGGAGGCGAGCTTGAAACAGTTTTCCCAGCTACATGGCCAGACGTCGC
GTCTGAATTCGATTGCAATAGATGA back to topprotein sequence of Ggra10583.t1 >Ggra10583.t1 ID=Ggra10583.t1|Name=Ggra10583.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MRRYIPFSGAPAASAAPPVRSSSPASRERSPLQSHSQLADAHTPPPTPQQ
DAPPSSPSSRSHLPHVSLPHVSLPHVPHVPVPHVNVHALPSMRRLFHTAS
SNDSQSMPAHTPLTELSVNVEEAFGPVGTPAPNVASMTHDCLLVELHESV
HSRRRVLVQFLRARQGNPHEAFAMMIHTFKWRQATDLHLYLSQNVINMLR
PNACFPLHIISDPDTCKQPVAYGLPRLLDKRKVDRAQFQNALLSFLESIY
FAHTYVLDEIVIILDFREWSIRRNAPYRLVKEGIQTLQEFYPDRLGYIFL
VNYPVTIRAAYTVVSPIIDPIAKEKIVWAAEDDPAVTLSKYIAPKSIPTF
LGGELETVFPATWPDVASEFDCNR* back to topmRNA from alignment at tig00000904_pilon:316892..318016+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10583.t1 ID=Ggra10583.t1|Name=Ggra10583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000904_pilon:316892..318016+ (Gracilaria gracilis GNS1m male)
ATGCGTCGGTACATACCGTTCTCGGGCGCGCCGGCCGCCTCTGCTGCGCC
GCCCGTGCGTTCTTCCTCGCCCGCGTCGCGAGAGCGCTCTCCACTTCAGT
CGCACTCCCAACTTGCGGACGCGCATAcgccgccgccgacgccgcagcag
gacgcaccgccttcctcgccgtcgtcgcGATCGCATCTGCCGCATGTTTC
GCTGCCGCATGTTTCGCTGCCGCATGTGCCGCACGTCCCCGTGCCGCACG
TTAACGTCCACGCGCTGCCGAGCATGCGCAGGTTGTTTCACACCGCCTCG
TCGAACGACTCCCAATCCATGCCGGCGCACACGCCGTTGACTGAGCTCAG
CGTAAACGTGGAGGAAGCGTTCGGACCTGTAGGCACACCTGCGCCTAACG
TTGCTTCAATGACGCATGATTGTCTCCTCGTTGAGCTTCATGAGAGTGTG
CATAGTCGCCGTCGTGTCCTCGTTCAGTTTCTCCGAGCGCGCCAGGGTAA
TCCCCATGAGGCCTTTGCCATGATGATCCACACCTTCAAGTGGCGCCAAG
CTACCGATTTGCACCTCTATCTTTCTCAGAATGTTATCAACATGCTCCGA
CCCAACGCTTGCTTCCCATTGCACATAATATCTGACCCTGACACTTGCAA
GCAACCTGTCGCCTATGGCCTCCCGCGCCTCCTCGACAAGAGAAAAGTCG
ACCGTGCGCAGTTCCAGAACGCTTTGCTATCATTTCTAGAGTCAATTTAT
TTTGCTCACACATATGTCTTGGATGAAATAGTCATTATCTTAGACTTCCG
CGAATGGTCAATCCGCCGGAATGCCCCTTACCGTCTTGTAAAAGAGGGCA
TCCAGACACTACAAGAGTTCTACCCGGACCGGTTGGGTTATATTTTCCTC
GTCAACTATCCGGTCACCATCCGAGCCGCCTACACCGTGGTAAGCCCAAT
CATAGACCCGATTGCCAAGGAGAAGATTGTCTGGGCTGCAGAGGATGACC
CCGCTGTTACTCTCAGCAAGTATATTGCACCGAAATCCATCCCTACTTTT
CTTGGAGGCGAGCTTGAAACAGTTTTCCCAGCTACATGGCCAGACGTCGC
GTCTGAATTCGATTGCAATAGATGA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:316892..318016+ >Ggra10583.t1 ID=Ggra10583.t1|Name=Ggra10583.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000904_pilon:316892..318016+ (Gracilaria gracilis GNS1m male)
ATGCGTCGGTACATACCGTTCTCGGGCGCGCCGGCCGCCTCTGCTGCGCC
GCCCGTGCGTTCTTCCTCGCCCGCGTCGCGAGAGCGCTCTCCACTTCAGT
CGCACTCCCAACTTGCGGACGCGCATAcgccgccgccgacgccgcagcag
gacgcaccgccttcctcgccgtcgtcgcGATCGCATCTGCCGCATGTTTC
GCTGCCGCATGTTTCGCTGCCGCATGTGCCGCACGTCCCCGTGCCGCACG
TTAACGTCCACGCGCTGCCGAGCATGCGCAGGTTGTTTCACACCGCCTCG
TCGAACGACTCCCAATCCATGCCGGCGCACACGCCGTTGACTGAGCTCAG
CGTAAACGTGGAGGAAGCGTTCGGACCTGTAGGCACACCTGCGCCTAACG
TTGCTTCAATGACGCATGATTGTCTCCTCGTTGAGCTTCATGAGAGTGTG
CATAGTCGCCGTCGTGTCCTCGTTCAGTTTCTCCGAGCGCGCCAGGGTAA
TCCCCATGAGGCCTTTGCCATGATGATCCACACCTTCAAGTGGCGCCAAG
CTACCGATTTGCACCTCTATCTTTCTCAGAATGTTATCAACATGCTCCGA
CCCAACGCTTGCTTCCCATTGCACATAATATCTGACCCTGACACTTGCAA
GCAACCTGTCGCCTATGGCCTCCCGCGCCTCCTCGACAAGAGAAAAGTCG
ACCGTGCGCAGTTCCAGAACGCTTTGCTATCATTTCTAGAGTCAATTTAT
TTTGCTCACACATATGTCTTGGATGAAATAGTCATTATCTTAGACTTCCG
CGAATGGTCAATCCGCCGGAATGCCCCTTACCGTCTTGTAAAAGAGGGCA
TCCAGACACTACAAGAGTTCTACCCGGACCGGTTGGGTTATATTTTCCTC
GTCAACTATCCGGTCACCATCCGAGCCGCCTACACCGTGGTAAGCCCAAT
CATAGACCCGATTGCCAAGGAGAAGATTGTCTGGGCTGCAGAGGATGACC
CCGCTGTTACTCTCAGCAAGTATATTGCACCGAAATCCATCCCTACTTTT
CTTGGAGGCGAGCTTGAAACAGTTTTCCCAGCTACATGGCCAGACGTCGC
GTCTGAATTCGATTGCAATAGATGA back to top
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