Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 1183438.GKIL_1048 |
| Preferred name | rbpD |
| PFAMs | RRM_1 |
| Max annot lvl | 1117|Cyanobacteria |
| Evalue | 2.79e-14 |
| EggNOG OGs | COG0724@1|root,COG0724@2|Bacteria,1G7Q7@1117|Cyanobacteria |
| Description | PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10582.t1.stop1 | Ggra10582.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 314777..314779 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10582.t1.start1 | Ggra10582.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 316346..316348 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MSRTKKAAKAAKKSKRKDVAVADVPDAKPAPSAEVKLSKSAKRKSKDRPS
AVVSNANAVQLPDSTPKDSSKKDKKKKKKSKKKPPTPPPESDDESSDDSS
TSEEQSDSPPQSAQVAKKSKSKSRGKPEPEESSSSDEESSSDEEEAPAKV
KPKKQLKGKANGRKPAESDDESSDSDSDTPDQVPSAKQNGASKPSIKSTP
STSDSDSDQSSESEDDAPSKPSTKEQQADDSDSSESSEDESEEPKEKPKP
VKQVKGKANGKKAAADSSDGEESSSESEESSSDENAGEDEQKTPMEVDKP
PKSENDTGDDFQQKRKRESSQFEVQPNKRHQPTAAPDEELRVFVGGVPFS
CTEDELGSFLSECGEITDLFLPRDRETDRIRGYAFVSFAESSAVQAALKL
DGSFLKGRHLRINPAGSRPSNGPRRGGSRGRDGGRGGGRGGRGGRGGYVG
GFGGGFGGGFGGGRGGGRGGGRGGREWGRGGGQQGGRGRGFGNRGGFGGR
GGSSNFANGGVKGTKTTFEDDSD* back to topspliced messenger RNA >Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000904_pilon:314777..316348- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTCGTACTAAGAAGGCTGCGAAGGCTGCTAAGAAGAGCAAGAGGAA
GGATGTCGCTGTCGCTGACGTTCCCGATGCAAAACCCGCCCCATCGGCGG
AGGTGAAGCTCTCGAAGAGCGCCAAGCGCAAGTCTAAAGACCGCCCGTCT
GCTGTCGTGTCTAACGCAAACGCCGTTCAGCTCCCTGATTCCACTCCCAA
GGACTCTTCCAAGAAGGACAAGAAGAAGAAGAAGAAGAGCAAGAAGAAGC
CACCCACCCCTCCTCCCGAGTCCGATGATGAATCAAGTGATGACTCTTCC
ACCAGCGAAGAACAATCCGATTCACCGCCTCAGAGCGCTCAAGTGGCGAA
GAAGTCCAAATCCAAATCACGTGGAAAGCCCGAACCCGAGGAAAGCTCCA
GCTCGGACGAGGAATCGTCATCAGACGAGGAGGAGGCTCCTGCCAAGGTC
AAGCCTAAAAAGCAACTCAAAGGTAAAGCTAACGGCCGCAAGCCGGCTGA
GAGTGATGATGAAAGTAGTGACAGTGATTCTGACACCCCCGACCAAGTTC
CGTCCGCCAAGCAGAATGGAGCCTCCAAACCTTCTATCAAGTCTACTCCT
AGTACCAGTGATTCGGATAGTGACCAAAGCTCTGAGAGCGAGGATGATGC
CCCATCCAAGCCTTCCACCAAAGAGCAACAGGCTGACGACAGTGATAGCT
CCGAATCCTCTGAAGATGAAAGCGAGGAGCCGAAAGAAAAACCCAAACCC
GTCAAGCAGGTTAAGGGTAAGGCAAACGGGAAGAAGGCAGCTGCTGATTC
TTCTGATGGAGAGGAAAGCTCCAGCGAGTCAGAGGAGAGCTCCAGTGACG
AAAACGCTGGTGAAGATGAGCAGAAAACGCCAATGGAAGTAGACAAGCCC
CCCAAGTCAGAAAACGATACTGGGGATGACTTCCAACAGAAGAGGAAGCG
AGAGTCGTCCCAATTTGAAGTTCAGCCCAATAAGAGGCACCAGCCTACCG
CTGCTCCGGATGAAGAACTTCGTGTGTTCGTCGGCGGTGTGCCATTCTCT
TGCACGGAAGACGAGTTGGGAAGTTTCCTCTCGGAATGTGGCGAAATAAC
TGATCTGTTCCTCCCACGTGATAGAGAAACTGACCGTATCCGGGGCTATG
CCTTCGTGAGCTTTGCTGAATCATCTGCCGTACAAGCAGCCCTTAAGCTG
GACGGCAGCTTCTTGAAAGGCAGGCATCTGAGGATAAATCCCGCTGGGTC
AAGGCCTAGTAACGGTCCGAGGCGAGGTGGTTCCCGAGGACGTGATGGTG
GTCGTGGTGGTGGTCGTGGCGGACGCGGCGGTCGTGGTGGATACGTCGGT
GGCTTCGGTGGTGGCTTTGGTGGTGGCTTTGGTGGTGGTCGTGGTGGTGG
CCGTGGTGGTGGCCGTGGTGGCCGTGAATGGGGTCGTGGTGGCGGTCAGC
AAGGAGGCCGCGGTAGAGGCTTCGGTAATCGCGGTGGGTTTGGTGGTCGT
GGAGGCTCATCAAACTTTGCAAACGGAGGAGTTAAGGGAACAAAGACCAC
TTTCGAAGACGACAGTGACTGA back to topprotein sequence of Ggra10582.t1 >Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MSRTKKAAKAAKKSKRKDVAVADVPDAKPAPSAEVKLSKSAKRKSKDRPS
AVVSNANAVQLPDSTPKDSSKKDKKKKKKSKKKPPTPPPESDDESSDDSS
TSEEQSDSPPQSAQVAKKSKSKSRGKPEPEESSSSDEESSSDEEEAPAKV
KPKKQLKGKANGRKPAESDDESSDSDSDTPDQVPSAKQNGASKPSIKSTP
STSDSDSDQSSESEDDAPSKPSTKEQQADDSDSSESSEDESEEPKEKPKP
VKQVKGKANGKKAAADSSDGEESSSESEESSSDENAGEDEQKTPMEVDKP
PKSENDTGDDFQQKRKRESSQFEVQPNKRHQPTAAPDEELRVFVGGVPFS
CTEDELGSFLSECGEITDLFLPRDRETDRIRGYAFVSFAESSAVQAALKL
DGSFLKGRHLRINPAGSRPSNGPRRGGSRGRDGGRGGGRGGRGGRGGYVG
GFGGGFGGGFGGGRGGGRGGGRGGREWGRGGGQQGGRGRGFGNRGGFGGR
GGSSNFANGGVKGTKTTFEDDSD* back to topmRNA from alignment at tig00000904_pilon:314777..316348- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000904_pilon:314777..316348- (Gracilaria gracilis GNS1m male)
ATGTCTCGTACTAAGAAGGCTGCGAAGGCTGCTAAGAAGAGCAAGAGGAA
GGATGTCGCTGTCGCTGACGTTCCCGATGCAAAACCCGCCCCATCGGCGG
AGGTGAAGCTCTCGAAGAGCGCCAAGCGCAAGTCTAAAGACCGCCCGTCT
GCTGTCGTGTCTAACGCAAACGCCGTTCAGCTCCCTGATTCCACTCCCAA
GGACTCTTCCAAGAAGGACAAGAAGAAGAAGAAGAAGAGCAAGAAGAAGC
CACCCACCCCTCCTCCCGAGTCCGATGATGAATCAAGTGATGACTCTTCC
ACCAGCGAAGAACAATCCGATTCACCGCCTCAGAGCGCTCAAGTGGCGAA
GAAGTCCAAATCCAAATCACGTGGAAAGCCCGAACCCGAGGAAAGCTCCA
GCTCGGACGAGGAATCGTCATCAGACGAGGAGGAGGCTCCTGCCAAGGTC
AAGCCTAAAAAGCAACTCAAAGGTAAAGCTAACGGCCGCAAGCCGGCTGA
GAGTGATGATGAAAGTAGTGACAGTGATTCTGACACCCCCGACCAAGTTC
CGTCCGCCAAGCAGAATGGAGCCTCCAAACCTTCTATCAAGTCTACTCCT
AGTACCAGTGATTCGGATAGTGACCAAAGCTCTGAGAGCGAGGATGATGC
CCCATCCAAGCCTTCCACCAAAGAGCAACAGGCTGACGACAGTGATAGCT
CCGAATCCTCTGAAGATGAAAGCGAGGAGCCGAAAGAAAAACCCAAACCC
GTCAAGCAGGTTAAGGGTAAGGCAAACGGGAAGAAGGCAGCTGCTGATTC
TTCTGATGGAGAGGAAAGCTCCAGCGAGTCAGAGGAGAGCTCCAGTGACG
AAAACGCTGGTGAAGATGAGCAGAAAACGCCAATGGAAGTAGACAAGCCC
CCCAAGTCAGAAAACGATACTGGGGATGACTTCCAACAGAAGAGGAAGCG
AGAGTCGTCCCAATTTGAAGTTCAGCCCAATAAGAGGCACCAGCCTACCG
CTGCTCCGGATGAAGAACTTCGTGTGTTCGTCGGCGGTGTGCCATTCTCT
TGCACGGAAGACGAGTTGGGAAGTTTCCTCTCGGAATGTGGCGAAATAAC
TGATCTGTTCCTCCCACGTGATAGAGAAACTGACCGTATCCGGGGCTATG
CCTTCGTGAGCTTTGCTGAATCATCTGCCGTACAAGCAGCCCTTAAGCTG
GACGGCAGCTTCTTGAAAGGCAGGCATCTGAGGATAAATCCCGCTGGGTC
AAGGCCTAGTAACGGTCCGAGGCGAGGTGGTTCCCGAGGACGTGATGGTG
GTCGTGGTGGTGGTCGTGGCGGACGCGGCGGTCGTGGTGGATACGTCGGT
GGCTTCGGTGGTGGCTTTGGTGGTGGCTTTGGTGGTGGTCGTGGTGGTGG
CCGTGGTGGTGGCCGTGGTGGCCGTGAATGGGGTCGTGGTGGCGGTCAGC
AAGGAGGCCGCGGTAGAGGCTTCGGTAATCGCGGTGGGTTTGGTGGTCGT
GGAGGCTCATCAAACTTTGCAAACGGAGGAGTTAAGGGAACAAAGACCAC
TTTCGAAGACGACAGTGACTGA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:314777..316348- >Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000904_pilon:314777..316348- (Gracilaria gracilis GNS1m male)
ATGTCTCGTACTAAGAAGGCTGCGAAGGCTGCTAAGAAGAGCAAGAGGAA
GGATGTCGCTGTCGCTGACGTTCCCGATGCAAAACCCGCCCCATCGGCGG
AGGTGAAGCTCTCGAAGAGCGCCAAGCGCAAGTCTAAAGACCGCCCGTCT
GCTGTCGTGTCTAACGCAAACGCCGTTCAGCTCCCTGATTCCACTCCCAA
GGACTCTTCCAAGAAGGACAAGAAGAAGAAGAAGAAGAGCAAGAAGAAGC
CACCCACCCCTCCTCCCGAGTCCGATGATGAATCAAGTGATGACTCTTCC
ACCAGCGAAGAACAATCCGATTCACCGCCTCAGAGCGCTCAAGTGGCGAA
GAAGTCCAAATCCAAATCACGTGGAAAGCCCGAACCCGAGGAAAGCTCCA
GCTCGGACGAGGAATCGTCATCAGACGAGGAGGAGGCTCCTGCCAAGGTC
AAGCCTAAAAAGCAACTCAAAGGTAAAGCTAACGGCCGCAAGCCGGCTGA
GAGTGATGATGAAAGTAGTGACAGTGATTCTGACACCCCCGACCAAGTTC
CGTCCGCCAAGCAGAATGGAGCCTCCAAACCTTCTATCAAGTCTACTCCT
AGTACCAGTGATTCGGATAGTGACCAAAGCTCTGAGAGCGAGGATGATGC
CCCATCCAAGCCTTCCACCAAAGAGCAACAGGCTGACGACAGTGATAGCT
CCGAATCCTCTGAAGATGAAAGCGAGGAGCCGAAAGAAAAACCCAAACCC
GTCAAGCAGGTTAAGGGTAAGGCAAACGGGAAGAAGGCAGCTGCTGATTC
TTCTGATGGAGAGGAAAGCTCCAGCGAGTCAGAGGAGAGCTCCAGTGACG
AAAACGCTGGTGAAGATGAGCAGAAAACGCCAATGGAAGTAGACAAGCCC
CCCAAGTCAGAAAACGATACTGGGGATGACTTCCAACAGAAGAGGAAGCG
AGAGTCGTCCCAATTTGAAGTTCAGCCCAATAAGAGGCACCAGCCTACCG
CTGCTCCGGATGAAGAACTTCGTGTGTTCGTCGGCGGTGTGCCATTCTCT
TGCACGGAAGACGAGTTGGGAAGTTTCCTCTCGGAATGTGGCGAAATAAC
TGATCTGTTCCTCCCACGTGATAGAGAAACTGACCGTATCCGGGGCTATG
CCTTCGTGAGCTTTGCTGAATCATCTGCCGTACAAGCAGCCCTTAAGCTG
GACGGCAGCTTCTTGAAAGGCAGGCATCTGAGGATAAATCCCGCTGGGTC
AAGGCCTAGTAACGGTCCGAGGCGAGGTGGTTCCCGAGGACGTGATGGTG
GTCGTGGTGGTGGTCGTGGCGGACGCGGCGGTCGTGGTGGATACGTCGGT
GGCTTCGGTGGTGGCTTTGGTGGTGGCTTTGGTGGTGGTCGTGGTGGTGG
CCGTGGTGGTGGCCGTGGTGGCCGTGAATGGGGTCGTGGTGGCGGTCAGC
AAGGAGGCCGCGGTAGAGGCTTCGGTAATCGCGGTGGGTTTGGTGGTCGT
GGAGGCTCATCAAACTTTGCAAACGGAGGAGTTAAGGGAACAAAGACCAC
TTTCGAAGACGACAGTGACTGA back to top
|