Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 42345.XP_008782633.1 |
| PFAMs | HAD_2 |
| Max annot lvl | 35493|Streptophyta |
| Evalue | 1.28e-47 |
| EggNOG OGs | COG0637@1|root,KOG2914@2759|Eukaryota,37PQC@33090|Viridiplantae,3GA0S@35493|Streptophyta,3KSAY@4447|Liliopsida |
| Description | Haloacid dehalogenase-like hydrolase |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra1058.t1.start1 | Ggra1058.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000868_pilon 72087..72089 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=319bp
MTERGDAPPDSVSAPPARHSSLSNLDRLLENTEPTYTTWQRERAKTSLST
FSYDRPLLGADELNESLRPSHLQRHRHVLAPDEQFAAVFMWDTVVYNARE
LEKRAWTIVAEENTLPPPDLQDIVRAEEMAPEAAVQRAFYWFAEWGDIKR
YVFRKAEIFQTLCASYEFHAREGLSDWLQSLDEYGVKTILCSPHPRQFVL
DVLQRIGLSSFFTSSDIVAAEDECESLEQVFLLAAVKAQRPPSKCVVFTD
RPSGVAAAHDVSAKVVALLGVHAAYEIKSADQTVADYEDLVVYNIRRLFS
QQGAEYLDPLTELEIDRK* back to topspliced messenger RNA >Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000868_pilon:71133..72089- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGACGGAGCGGGGAGACGCTCCGCCTGACTCTGTGTCGGCTCCGCCTGC
GCGACATAGCTCTCTGTCCAACTTGGACCGACTGCTGGAGAATACGGAGC
CTACCTATACTACCTGGCAGCGTGAAAGGGCGAAGACCTCTCTGTCCACG
TTCAGTTACGACCGCCCGTTGCTGGGCGCTGACGAACTCAATGAATCTCT
CAGGCCGTCGCATCTGCAGCGTCACCGACATGTGCTGGCGCCGGATGAGC
AGTTTGCGGCCGTTTTCATGTGGGATACCGTCGTGTACAATGCGCGCGAG
CTGGAGAAACGTGCGTGGACCATCGTGGCCGAGGAGAACACTCTGCCGCC
ACCGGATTTGCAAGACATAGTACGCGCGGAGGAAATGGCGCCTGAGGCAG
CTGTGCAACGCGCTTTTTACTGGTTTGCTGAATGGGGCGACATTAAGCGC
TATGTGTTTCGCAAGGCAGAGATATTTCAAACGCTATGCGCTTCCTACGA
GTTTCACGCACGGGAGGGCCTCTCCGACTGGTTGCAAAGCCTCGATGAAT
ACGGCGTGAAGACCATTTTGTGCTCCCCGCACCCAAGACAATTCGTTCTG
GACGTGCTTCAACGTATTGGCCTTTCTTCTTTTTTCACCTCAAGCGACAT
CGTTGCCGCAGAGGATGAGTGCGAATCGCTGGAGCAAGTTTTCTTGCTGG
CGGCGGTCAAGGCACAGCGACCGCCAAGTAAGTGCGTGGTCTTCACGGAT
AGACCATCCGGTGTCGCCGCCGCACACGACGTTAGCGCAAAAGTGGTTGC
GCTGTTGGGTGTTCATGCCGCGTACGAGATTAAGTCTGCTGATCAAACTG
TCGCAGACTACGAAGATCTCGTTGTGTACAACATTCGCCGCCTGTTTTCA
CAACAAGGAGCTGAGTATCTTGACCCGCTTACCGAGCTTGAGATTGACCG
CAAGTGA back to topprotein sequence of Ggra1058.t1 >Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=319bp
MTERGDAPPDSVSAPPARHSSLSNLDRLLENTEPTYTTWQRERAKTSLST
FSYDRPLLGADELNESLRPSHLQRHRHVLAPDEQFAAVFMWDTVVYNARE
LEKRAWTIVAEENTLPPPDLQDIVRAEEMAPEAAVQRAFYWFAEWGDIKR
YVFRKAEIFQTLCASYEFHAREGLSDWLQSLDEYGVKTILCSPHPRQFVL
DVLQRIGLSSFFTSSDIVAAEDECESLEQVFLLAAVKAQRPPSKCVVFTD
RPSGVAAAHDVSAKVVALLGVHAAYEIKSADQTVADYEDLVVYNIRRLFS
QQGAEYLDPLTELEIDRK* back to topmRNA from alignment at tig00000868_pilon:71133..72089- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000868_pilon:71133..72089- (Gracilaria gracilis GNS1m male)
ATGACGGAGCGGGGAGACGCTCCGCCTGACTCTGTGTCGGCTCCGCCTGC
GCGACATAGCTCTCTGTCCAACTTGGACCGACTGCTGGAGAATACGGAGC
CTACCTATACTACCTGGCAGCGTGAAAGGGCGAAGACCTCTCTGTCCACG
TTCAGTTACGACCGCCCGTTGCTGGGCGCTGACGAACTCAATGAATCTCT
CAGGCCGTCGCATCTGCAGCGTCACCGACATGTGCTGGCGCCGGATGAGC
AGTTTGCGGCCGTTTTCATGTGGGATACCGTCGTGTACAATGCGCGCGAG
CTGGAGAAACGTGCGTGGACCATCGTGGCCGAGGAGAACACTCTGCCGCC
ACCGGATTTGCAAGACATAGTACGCGCGGAGGAAATGGCGCCTGAGGCAG
CTGTGCAACGCGCTTTTTACTGGTTTGCTGAATGGGGCGACATTAAGCGC
TATGTGTTTCGCAAGGCAGAGATATTTCAAACGCTATGCGCTTCCTACGA
GTTTCACGCACGGGAGGGCCTCTCCGACTGGTTGCAAAGCCTCGATGAAT
ACGGCGTGAAGACCATTTTGTGCTCCCCGCACCCAAGACAATTCGTTCTG
GACGTGCTTCAACGTATTGGCCTTTCTTCTTTTTTCACCTCAAGCGACAT
CGTTGCCGCAGAGGATGAGTGCGAATCGCTGGAGCAAGTTTTCTTGCTGG
CGGCGGTCAAGGCACAGCGACCGCCAAGTAAGTGCGTGGTCTTCACGGAT
AGACCATCCGGTGTCGCCGCCGCACACGACGTTAGCGCAAAAGTGGTTGC
GCTGTTGGGTGTTCATGCCGCGTACGAGATTAAGTCTGCTGATCAAACTG
TCGCAGACTACGAAGATCTCGTTGTGTACAACATTCGCCGCCTGTTTTCA
CAACAAGGAGCTGAGTATCTTGACCCGCTTACCGAGCTTGAGATTGACCG
CAAGTGA back to topCoding sequence (CDS) from alignment at tig00000868_pilon:71133..72089- >Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000868_pilon:71133..72089- (Gracilaria gracilis GNS1m male)
ATGACGGAGCGGGGAGACGCTCCGCCTGACTCTGTGTCGGCTCCGCCTGC
GCGACATAGCTCTCTGTCCAACTTGGACCGACTGCTGGAGAATACGGAGC
CTACCTATACTACCTGGCAGCGTGAAAGGGCGAAGACCTCTCTGTCCACG
TTCAGTTACGACCGCCCGTTGCTGGGCGCTGACGAACTCAATGAATCTCT
CAGGCCGTCGCATCTGCAGCGTCACCGACATGTGCTGGCGCCGGATGAGC
AGTTTGCGGCCGTTTTCATGTGGGATACCGTCGTGTACAATGCGCGCGAG
CTGGAGAAACGTGCGTGGACCATCGTGGCCGAGGAGAACACTCTGCCGCC
ACCGGATTTGCAAGACATAGTACGCGCGGAGGAAATGGCGCCTGAGGCAG
CTGTGCAACGCGCTTTTTACTGGTTTGCTGAATGGGGCGACATTAAGCGC
TATGTGTTTCGCAAGGCAGAGATATTTCAAACGCTATGCGCTTCCTACGA
GTTTCACGCACGGGAGGGCCTCTCCGACTGGTTGCAAAGCCTCGATGAAT
ACGGCGTGAAGACCATTTTGTGCTCCCCGCACCCAAGACAATTCGTTCTG
GACGTGCTTCAACGTATTGGCCTTTCTTCTTTTTTCACCTCAAGCGACAT
CGTTGCCGCAGAGGATGAGTGCGAATCGCTGGAGCAAGTTTTCTTGCTGG
CGGCGGTCAAGGCACAGCGACCGCCAAGTAAGTGCGTGGTCTTCACGGAT
AGACCATCCGGTGTCGCCGCCGCACACGACGTTAGCGCAAAAGTGGTTGC
GCTGTTGGGTGTTCATGCCGCGTACGAGATTAAGTCTGCTGATCAAACTG
TCGCAGACTACGAAGATCTCGTTGTGTACAACATTCGCCGCCTGTTTTCA
CAACAAGGAGCTGAGTATCTTGACCCGCTTACCGAGCTTGAGATTGACCG
CAAGTGA back to top
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