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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 28532.XP_010556359.1 |
| PFAMs | PAP_fibrillin |
| Max annot lvl | 35493|Streptophyta |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035 |
| Evalue | 8.23e-30 |
| EggNOG OGs | 28JPH@1|root,2QSMF@2759|Eukaryota,37Q51@33090|Viridiplantae,3GDZE@35493|Streptophyta,3HU6M@3699|Brassicales |
| Description | plastid-lipid-associated protein 4, chloroplastic |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10576.t1.start1 | Ggra10576.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 299088..299090 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10576.t1.stop1 | Ggra10576.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 299622..299624 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=179bp
MNVQVPSAFKQTLLDLVQPLNFGRAVAKDPVKQQEIEDLARQVEATNPSL
SPGTDPNLSGVWDMIYTTSKSILAVDNPAFLQSSRIVQEINAEELKGSNA
ETFKFGPLQFVNAVNFELSAASPTKFDVNFVQFIVFNLLRFNVRENKRFT
GWLQVTYLDENLRISRGNRGNLFILVKK* back to topspliced messenger RNA >Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000904_pilon:299088..299624+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAACGTTCAAGTACCAAGCGCATTCAAACAAACCCTCCTAGATCTGGT
ACAACCTCTCAACTTCGGACGCGCAGTAGCGAAAGACCCCGTCAAACAGC
AGGAAATCGAAGACTTGGCACGACAAGTAGAGGCCACAAACCCTTCTCTC
AGTCCTGGTACAGACCCGAATTTGTCAGGAGTGTGGGACATGATTTACAC
AACGTCGAAGAGCATTCTGGCTGTCGATAATCCCGCTTTTCTACAAAGTT
CCCGTATTGTACAGGAAATCAACGCTGAGGAACTGAAGGGAAGTAACGCT
GAAACGTTCAAGTTTGGGCCTTTGCAGTTTGTCAACGCTGTCAATTTTGA
GCTCTCTGCAGCCTCACCAACCAAGTTTGATGTCAACTTTGTCCAGTTTA
TCGTGTTCAATTTGCTAAGATTTAACGTGAGGGAAAATAAGCGCTTCACT
GGCTGGCTGCAAGTCACATACCTTGATGAAAACCTTCGCATTTCTAGAGG
AAATCGAGGTAACCTTTTCATCCTCGTTAAGAAATGA back to topprotein sequence of Ggra10576.t1 >Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=179bp
MNVQVPSAFKQTLLDLVQPLNFGRAVAKDPVKQQEIEDLARQVEATNPSL
SPGTDPNLSGVWDMIYTTSKSILAVDNPAFLQSSRIVQEINAEELKGSNA
ETFKFGPLQFVNAVNFELSAASPTKFDVNFVQFIVFNLLRFNVRENKRFT
GWLQVTYLDENLRISRGNRGNLFILVKK* back to topmRNA from alignment at tig00000904_pilon:299088..299624+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000904_pilon:299088..299624+ (Gracilaria gracilis GNS1m male)
ATGAACGTTCAAGTACCAAGCGCATTCAAACAAACCCTCCTAGATCTGGT
ACAACCTCTCAACTTCGGACGCGCAGTAGCGAAAGACCCCGTCAAACAGC
AGGAAATCGAAGACTTGGCACGACAAGTAGAGGCCACAAACCCTTCTCTC
AGTCCTGGTACAGACCCGAATTTGTCAGGAGTGTGGGACATGATTTACAC
AACGTCGAAGAGCATTCTGGCTGTCGATAATCCCGCTTTTCTACAAAGTT
CCCGTATTGTACAGGAAATCAACGCTGAGGAACTGAAGGGAAGTAACGCT
GAAACGTTCAAGTTTGGGCCTTTGCAGTTTGTCAACGCTGTCAATTTTGA
GCTCTCTGCAGCCTCACCAACCAAGTTTGATGTCAACTTTGTCCAGTTTA
TCGTGTTCAATTTGCTAAGATTTAACGTGAGGGAAAATAAGCGCTTCACT
GGCTGGCTGCAAGTCACATACCTTGATGAAAACCTTCGCATTTCTAGAGG
AAATCGAGGTAACCTTTTCATCCTCGTTAAGAAATGA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:299088..299624+ >Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000904_pilon:299088..299624+ (Gracilaria gracilis GNS1m male)
ATGAACGTTCAAGTACCAAGCGCATTCAAACAAACCCTCCTAGATCTGGT
ACAACCTCTCAACTTCGGACGCGCAGTAGCGAAAGACCCCGTCAAACAGC
AGGAAATCGAAGACTTGGCACGACAAGTAGAGGCCACAAACCCTTCTCTC
AGTCCTGGTACAGACCCGAATTTGTCAGGAGTGTGGGACATGATTTACAC
AACGTCGAAGAGCATTCTGGCTGTCGATAATCCCGCTTTTCTACAAAGTT
CCCGTATTGTACAGGAAATCAACGCTGAGGAACTGAAGGGAAGTAACGCT
GAAACGTTCAAGTTTGGGCCTTTGCAGTTTGTCAACGCTGTCAATTTTGA
GCTCTCTGCAGCCTCACCAACCAAGTTTGATGTCAACTTTGTCCAGTTTA
TCGTGTTCAATTTGCTAAGATTTAACGTGAGGGAAAATAAGCGCTTCACT
GGCTGGCTGCAAGTCACATACCTTGATGAAAACCTTCGCATTTCTAGAGG
AAATCGAGGTAACCTTTTCATCCTCGTTAAGAAATGA back to top
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