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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 72664.XP_006411746.1 |
| PFAMs | Mito_carr |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K15111 |
| KEGG TC | 2.A.29.18 |
| GOs | GO:0000095,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0006855,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0015238,GO:0015805,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0072348,GO:1901682,GO:1901962 |
| Evalue | 4.25e-54 |
| EggNOG OGs | KOG0768@1|root,KOG0768@2759|Eukaryota,37KH0@33090|Viridiplantae,3G7KW@35493|Streptophyta,3HZFI@3699|Brassicales |
| Description | Belongs to the mitochondrial carrier (TC 2.A.29) family |
| COG category | C |
| BRITE | ko00000,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10570.t1.stop1 | Ggra10570.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 283220..283222 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10570.t1.start1 | Ggra10570.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 284363..284365 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MASKTSANLLLCDSSRRASVSSRRNVLTHHSDAQLASTFAGVTSRILLHP
VDCVKTRLQYIRTRPGSNEASRHLIRFIASEGLPGLYRGIIGALAGVLPY
SMLYMPSYELAQMQLSRLAHDKLLGVRHVVAGSFAGLCGSLVKVPVDVVK
KRLQAGIYPHIGAAVTSIASEGSGFAGGFRQFYTGWRSSIIYDVPYSAIQ
FTVLENVKRCVRRLKRRELVGVDHVLVGALTGMITSVVTEPLDVIKTRLM
TQRMKGGRPAITMYRGWLHCMRTIVQEEGPLALWKGTLPRLIWVGASSAI
WYGTYQAVRQSMNQKRQLAAKSESDVSGSQGVK* back to topspliced messenger RNA >Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000904_pilon:283220..284365- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCAGCAAAACCTCTGCTAACCTCCTTCTGTGTGACAGCTCGAGGCG
CGCGTCTGTATCGAGCCGGCGAAATGTTCTTACACACCACTCCGATGCGC
AACTGGCTTCTACCTTTGCCGGCGTCACCAGTCGAATTCTTCTGCACCCC
GTCGATTGCGTCAAAACCAGGTTGCAGTACATTCGTACCCGCCCCGGTTC
TAACGAGGCCTCGAGACACTTGATCCGCTTCATTGCATCCGAGGGACTAC
CGGGCCTTTATCGTGGCATTATTGGCGCACTGGCAGGAGTGCTGCCCTAT
TCGATGCTATATATGCCGAGTTACGAGCTCGCTCAGATGCAGCTTTCGCG
TCTTGCTCACGACAAGCTACTTGGTGTTCGCCATGTCGTTGCCGGTTCAT
TTGCCGGTCTTTGTGGTTCGTTGGTCAAGGTACCCGTTGATGTGGTCAAA
AAACGCTTGCAAGCCGGCATTTATCCCCATATAGGTGCTGCTGTCACGTC
TATTGCTTCCGAAGGCAGCGGCTTCGCGGGCGGATTTCGTCAGTTCTACA
CTGGTTGGCGAAGCTCCATTATATATGATGTACCATACAGCGCTATCCAG
TTTACCGTACTTGAGAATGTTAAGCGGTGCGTGAGACGCCTGAAAAGGAG
GGAACTGGTCGGAGTGGACCATGTACTCGTCGGTGCGCTAACCGGAATGA
TAACATCTGTTGTAACTGAGCCACTTGATGTAATCAAGACCAGATTAATG
ACACAACGAATGAAAGGCGGTCGGCCTGCAATAACAATGTACCGCGGGTG
GCTTCATTGTATGCGGACAATTGTACAAGAAGAAGGTCCATTGGCTTTAT
GGAAAGGAACATTGCCTCGCCTTATTTGGGTTGGCGCAAGTAGCGCAATT
TGGTATGGCACTTATCAGGCAGTTCGCCAATCTATGAACCAAAAGAGGCA
ATTGGCGGCAAAGAGTGAAAGCGATGTTTCTGGTTCTCAAGGGGTGAAAT
GA back to topprotein sequence of Ggra10570.t1 >Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MASKTSANLLLCDSSRRASVSSRRNVLTHHSDAQLASTFAGVTSRILLHP
VDCVKTRLQYIRTRPGSNEASRHLIRFIASEGLPGLYRGIIGALAGVLPY
SMLYMPSYELAQMQLSRLAHDKLLGVRHVVAGSFAGLCGSLVKVPVDVVK
KRLQAGIYPHIGAAVTSIASEGSGFAGGFRQFYTGWRSSIIYDVPYSAIQ
FTVLENVKRCVRRLKRRELVGVDHVLVGALTGMITSVVTEPLDVIKTRLM
TQRMKGGRPAITMYRGWLHCMRTIVQEEGPLALWKGTLPRLIWVGASSAI
WYGTYQAVRQSMNQKRQLAAKSESDVSGSQGVK* back to topmRNA from alignment at tig00000904_pilon:283220..284365- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000904_pilon:283220..284365- (Gracilaria gracilis GNS1m male)
ATGGCCAGCAAAACCTCTGCTAACCTCCTTCTGTGTGACAGCTCGAGGCG
CGCGTCTGTATCGAGCCGGCGAAATGTTCTTACACACCACTCCGATGCGC
AACTGGCTTCTACCTTTGCCGGCGTCACCAGTCGAATTCTTCTGCACCCC
GTCGATTGCGTCAAAACCAGGTTGCAGTACATTCGTACCCGCCCCGGTTC
TAACGAGGCCTCGAGACACTTGATCCGCTTCATTGCATCCGAGGGACTAC
CGGGCCTTTATCGTGGCATTATTGGCGCACTGGCAGGAGTGCTGCCCTAT
TCGATGCGTGCGTTTTTTCTACCCCTACCCGCCTCACTCTCGCTTCTCGT
TCCGCCTCACTAACATACCTGCCCGTTTATAGTATATATGCCGAGTTACG
AGCTCGCTCAGATGCAGCTTTCGCGTCTTGCTCACGACAAGCTACTTGGT
GTTCGCCATGTCGTTGCCGGTTCATTTGCCGGTCTTTGTGGTTCGTTGGT
CAAGGTACCCGTTGATGTGGTCAAAAAACGCTTGCAAGCCGGCATTTATC
CCCATATAGGTGCTGCTGTCACGTCTATTGCTTCCGAAGGCAGCGGCTTC
GCGGGCGGATTTCGTCAGTTCTACACTGGTTGGCGAAGCTCCATTATATA
TGATGTACCATACAGCGCTATCCAGTTTACCGTACTTGAGAATGTTAAGC
GGTGCGTGAGACGCCTGAAAAGGAGGGAACTGGTCGGAGTGGACCATGTA
CTCGTCGGTGCGCTAACCGGAATGATAACATCTGTTGTAACTGAGCCAGT
AAGTTGTTCCTAACACCCTTCCATGTTTAGACTAGATGCCATTCTAACTC
ACCGTTTGCAAACCTAGCTTGATGTAATCAAGACCAGATTAATGACACAA
CGAATGAAAGGCGGTCGGCCTGCAATAACAATGTACCGCGGGTGGCTTCA
TTGTATGCGGACAATTGTACAAGAAGAAGGTCCATTGGCTTTATGGAAAG
GAACATTGCCTCGCCTTATTTGGGTTGGCGCAAGTAGCGCAATTTGGTAT
GGCACTTATCAGGCAGTTCGCCAATCTATGAACCAAAAGAGGCAATTGGC
GGCAAAGAGTGAAAGCGATGTTTCTGGTTCTCAAGGGGTGAAATGA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:283220..284365- >Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000904_pilon:283220..284365- (Gracilaria gracilis GNS1m male)
ATGGCCAGCAAAACCTCTGCTAACCTCCTTCTGTGTGACAGCTCGAGGCG
CGCGTCTGTATCGAGCCGGCGAAATGTTCTTACACACCACTCCGATGCGC
AACTGGCTTCTACCTTTGCCGGCGTCACCAGTCGAATTCTTCTGCACCCC
GTCGATTGCGTCAAAACCAGGTTGCAGTACATTCGTACCCGCCCCGGTTC
TAACGAGGCCTCGAGACACTTGATCCGCTTCATTGCATCCGAGGGACTAC
CGGGCCTTTATCGTGGCATTATTGGCGCACTGGCAGGAGTGCTGCCCTAT
TCGATGCTATATATGCCGAGTTACGAGCTCGCTCAGATGCAGCTTTCGCG
TCTTGCTCACGACAAGCTACTTGGTGTTCGCCATGTCGTTGCCGGTTCAT
TTGCCGGTCTTTGTGGTTCGTTGGTCAAGGTACCCGTTGATGTGGTCAAA
AAACGCTTGCAAGCCGGCATTTATCCCCATATAGGTGCTGCTGTCACGTC
TATTGCTTCCGAAGGCAGCGGCTTCGCGGGCGGATTTCGTCAGTTCTACA
CTGGTTGGCGAAGCTCCATTATATATGATGTACCATACAGCGCTATCCAG
TTTACCGTACTTGAGAATGTTAAGCGGTGCGTGAGACGCCTGAAAAGGAG
GGAACTGGTCGGAGTGGACCATGTACTCGTCGGTGCGCTAACCGGAATGA
TAACATCTGTTGTAACTGAGCCACTTGATGTAATCAAGACCAGATTAATG
ACACAACGAATGAAAGGCGGTCGGCCTGCAATAACAATGTACCGCGGGTG
GCTTCATTGTATGCGGACAATTGTACAAGAAGAAGGTCCATTGGCTTTAT
GGAAAGGAACATTGCCTCGCCTTATTTGGGTTGGCGCAAGTAGCGCAATT
TGGTATGGCACTTATCAGGCAGTTCGCCAATCTATGAACCAAAAGAGGCA
ATTGGCGGCAAAGAGTGAAAGCGATGTTTCTGGTTCTCAAGGGGTGAAAT
GA back to top
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