Ggra1057.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1057.t1
Unique NameGgra1057.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:70116..70988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog269796.Rru_A0943
Preferred namelpxC
PFAMsLpxC
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00166,RC00300
KEGG koko:K02535
KEGG ReactionR04587
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Evalue1.66e-50
EggNOG OGsCOG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,2TUHH@28211|Alphaproteobacteria,2JPDC@204441|Rhodospirillales
EC3.5.1.108
DescriptionCatalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1057Ggra1057Gracilaria gracilis GNS1m malegenetig00000868_pilon 70116..70988 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1057.t1.start1Ggra1057.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 70116..70118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1057.t1.CDS1Ggra1057.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 70116..70988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1057.t1.exon1Ggra1057.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 70116..70988 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1057.t1.stop1Ggra1057.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 70986..70988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1057.t1Ggra1057.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 70116..70988 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1057.t1 ID=Ggra1057.t1|Name=Ggra1057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MTRQTTIKRAMRFVSTALHTGTPSVLTLRPAPANTGIIFHHRNDRIPATF
ENVADATLCTTLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSIGELP
IMDGSAWAFTLALKGQVVPLNAAKRLTIVRRAVRVNSADGKAHASLWPLP
GERSLDVEVMTFVSGMSRSDLGTQRVAFTLSEGSFRRHVARARTFWSRKE
LEVWRKKGLILGGGMDNSLLYEEGGKVLNSEGLRYSDEICRHLAVDCIGD
LRLGGVVLGRYTAVRPAHWLNVELLRKLYRDPENYVLEGD*
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spliced messenger RNA

>Ggra1057.t1 ID=Ggra1057.t1|Name=Ggra1057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000868_pilon:70116..70988+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGACAGACTACAATAAAGCGAGCCATGCGCTTTGTGAGCACTGC
GCTTCATACAGGCACGCCATCGGTGCTGACTTTGCGTCCAGCTCCAGCAA
ACACTGGCATCATCTTTCATCATCGCAATGACCGCATCCCAGCTACATTT
GAAAACGTTGCCGATGCCACGCTGTGCACTACATTGCGGGCGCCATCTAG
TTCCGCGACAACGGTTTCAAGCGTGGAGCACCTGCTCGCAGCTTTGTCCG
CAGCTGGAGTAGATAACGTGCAGGCACACACTTCAATTGGGGAATTGCCA
ATCATGGACGGCTCTGCATGGGCATTCACCCTCGCGCTGAAGGGGCAGGT
GGTGCCTTTGAACGCCGCAAAGCGCCTAACGATTGTTCGTCGAGCAGTAC
GCGTTAATTCAGCTGATGGGAAAGCACACGCCTCGTTGTGGCCACTTCCT
GGAGAAAGGTCGCTAGACGTGGAAGTGATGACGTTTGTGAGTGGCATGTC
TCGCTCCGACCTCGGCACGCAAAGGGTGGCGTTCACCCTGTCAGAAGGAT
CGTTCCGAAGACATGTGGCTCGCGCGCGAACTTTCTGGTCTAGGAAGGAG
CTGGAGGTGTGGCGCAAAAAAGGGCTTATACTGGGCGGTGGTATGGATAA
CTCTCTCTTATACGAAGAAGGAGGTAAAGTACTCAACTCGGAAGGACTTC
GATATTCGGACGAGATATGTCGCCATCTAGCTGTTGATTGCATTGGAGAC
CTGAGATTAGGGGGGGTTGTACTGGGCAGATACACGGCAGTAAGACCAGC
GCACTGGTTAAACGTTGAGTTGTTGAGAAAGCTTTACAGAGATCCGGAGA
ATTATGTCCTAGAGGGCGACTGA
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protein sequence of Ggra1057.t1

>Ggra1057.t1 ID=Ggra1057.t1|Name=Ggra1057.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MTRQTTIKRAMRFVSTALHTGTPSVLTLRPAPANTGIIFHHRNDRIPATF
ENVADATLCTTLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSIGELP
IMDGSAWAFTLALKGQVVPLNAAKRLTIVRRAVRVNSADGKAHASLWPLP
GERSLDVEVMTFVSGMSRSDLGTQRVAFTLSEGSFRRHVARARTFWSRKE
LEVWRKKGLILGGGMDNSLLYEEGGKVLNSEGLRYSDEICRHLAVDCIGD
LRLGGVVLGRYTAVRPAHWLNVELLRKLYRDPENYVLEGD*
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mRNA from alignment at tig00000868_pilon:70116..70988+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1057.t1 ID=Ggra1057.t1|Name=Ggra1057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000868_pilon:70116..70988+ (Gracilaria gracilis GNS1m male)
ATGACGAGACAGACTACAATAAAGCGAGCCATGCGCTTTGTGAGCACTGC
GCTTCATACAGGCACGCCATCGGTGCTGACTTTGCGTCCAGCTCCAGCAA
ACACTGGCATCATCTTTCATCATCGCAATGACCGCATCCCAGCTACATTT
GAAAACGTTGCCGATGCCACGCTGTGCACTACATTGCGGGCGCCATCTAG
TTCCGCGACAACGGTTTCAAGCGTGGAGCACCTGCTCGCAGCTTTGTCCG
CAGCTGGAGTAGATAACGTGCAGGCACACACTTCAATTGGGGAATTGCCA
ATCATGGACGGCTCTGCATGGGCATTCACCCTCGCGCTGAAGGGGCAGGT
GGTGCCTTTGAACGCCGCAAAGCGCCTAACGATTGTTCGTCGAGCAGTAC
GCGTTAATTCAGCTGATGGGAAAGCACACGCCTCGTTGTGGCCACTTCCT
GGAGAAAGGTCGCTAGACGTGGAAGTGATGACGTTTGTGAGTGGCATGTC
TCGCTCCGACCTCGGCACGCAAAGGGTGGCGTTCACCCTGTCAGAAGGAT
CGTTCCGAAGACATGTGGCTCGCGCGCGAACTTTCTGGTCTAGGAAGGAG
CTGGAGGTGTGGCGCAAAAAAGGGCTTATACTGGGCGGTGGTATGGATAA
CTCTCTCTTATACGAAGAAGGAGGTAAAGTACTCAACTCGGAAGGACTTC
GATATTCGGACGAGATATGTCGCCATCTAGCTGTTGATTGCATTGGAGAC
CTGAGATTAGGGGGGGTTGTACTGGGCAGATACACGGCAGTAAGACCAGC
GCACTGGTTAAACGTTGAGTTGTTGAGAAAGCTTTACAGAGATCCGGAGA
ATTATGTCCTAGAGGGCGACTGA
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Coding sequence (CDS) from alignment at tig00000868_pilon:70116..70988+

>Ggra1057.t1 ID=Ggra1057.t1|Name=Ggra1057.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000868_pilon:70116..70988+ (Gracilaria gracilis GNS1m male)
ATGACGAGACAGACTACAATAAAGCGAGCCATGCGCTTTGTGAGCACTGC
GCTTCATACAGGCACGCCATCGGTGCTGACTTTGCGTCCAGCTCCAGCAA
ACACTGGCATCATCTTTCATCATCGCAATGACCGCATCCCAGCTACATTT
GAAAACGTTGCCGATGCCACGCTGTGCACTACATTGCGGGCGCCATCTAG
TTCCGCGACAACGGTTTCAAGCGTGGAGCACCTGCTCGCAGCTTTGTCCG
CAGCTGGAGTAGATAACGTGCAGGCACACACTTCAATTGGGGAATTGCCA
ATCATGGACGGCTCTGCATGGGCATTCACCCTCGCGCTGAAGGGGCAGGT
GGTGCCTTTGAACGCCGCAAAGCGCCTAACGATTGTTCGTCGAGCAGTAC
GCGTTAATTCAGCTGATGGGAAAGCACACGCCTCGTTGTGGCCACTTCCT
GGAGAAAGGTCGCTAGACGTGGAAGTGATGACGTTTGTGAGTGGCATGTC
TCGCTCCGACCTCGGCACGCAAAGGGTGGCGTTCACCCTGTCAGAAGGAT
CGTTCCGAAGACATGTGGCTCGCGCGCGAACTTTCTGGTCTAGGAAGGAG
CTGGAGGTGTGGCGCAAAAAAGGGCTTATACTGGGCGGTGGTATGGATAA
CTCTCTCTTATACGAAGAAGGAGGTAAAGTACTCAACTCGGAAGGACTTC
GATATTCGGACGAGATATGTCGCCATCTAGCTGTTGATTGCATTGGAGAC
CTGAGATTAGGGGGGGTTGTACTGGGCAGATACACGGCAGTAAGACCAGC
GCACTGGTTAAACGTTGAGTTGTTGAGAAAGCTTTACAGAGATCCGGAGA
ATTATGTCCTAGAGGGCGACTGA
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