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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 3711.Bra005690.1-P |
| PFAMs | Mito_carr |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K15100 |
| KEGG TC | 2.A.29.7 |
| GOs | GO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015141,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0098656,GO:1903825,GO:1905039 |
| Evalue | 4.21e-09 |
| EggNOG OGs | KOG0756@1|root,KOG0756@2759|Eukaryota,37JDR@33090|Viridiplantae,3GCD8@35493|Streptophyta,3HUH2@3699|Brassicales |
| Description | Belongs to the mitochondrial carrier (TC 2.A.29) family |
| COG category | C |
| BRITE | ko00000,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10566.t1.stop1 | Ggra10566.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 214678..214680 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10566.t1.intron1 | Ggra10566.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000904_pilon 214801..214893 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10566.t1.start1 | Ggra10566.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 215086..215088 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=106bp
MGPGGLFSRIAQWLANELIVKGLSNNHAFQRFAVRSSQQVKELSKSAAEA
AKNISESESWVQMRKESEALRNQAKDFASALREEIEEGVRRAGQGKDSQP
PPTRK* back to topspliced messenger RNA >Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00000904_pilon:214678..215088- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGACCGGGGGGTCTGTTTTCAAGAATTGCTCAATGGTTGGCAAATGA
ACTTATCGTCAAAGGTCTATCGAACAACCATGCTTTCCAACGTTTCGCCG
TTCGCTCGTCTCAACAAGTCAAAGAACTGTCAAAGTCGGCAGCAGAGGCT
GCAAAAAACATATCCGAGAGTGAGAGTTGGGTGCAAATGAGAAAGGAATC
TGAGGCACTTCGGAACCAAGCTAAGGACTTTGCAAGTGCACTTCGAGAGG
AAATTGAGGAGGGTGTTAGAAGAGCAGGACAGGGAAAGGATTCCCAACCA
CCACCAACTCGGAAGTGA back to topprotein sequence of Ggra10566.t1 >Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MGPGGLFSRIAQWLANELIVKGLSNNHAFQRFAVRSSQQVKELSKSAAEA
AKNISESESWVQMRKESEALRNQAKDFASALREEIEEGVRRAGQGKDSQP
PPTRK* back to topmRNA from alignment at tig00000904_pilon:214678..215088- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000904_pilon:214678..215088- (Gracilaria gracilis GNS1m male)
ATGGGACCGGGGGGTCTGTTTTCAAGAATTGCTCAATGGTTGGCAAATGA
ACTTATCGTCAAAGGTCTATCGAACAACCATGCTTTCCAACGTTTCGCCG
TTCGCTCGTCTCAACAAGTCAAAGAACTGTCAAAGTCGGCAGCAGAGGCT
GCAAAAAACATATCCGAGAGTGAGAGTTGGGTGCAAATGAGAAAGGTAAT
GATGACGTATTCCAGAAATGCCTGTTTTGTCGATGTCAATGTTTCAGTCA
TTAGTTCTAACTAAATTTTTGTATCGTTGTGAATGTAGGAATCTGAGGCA
CTTCGGAACCAAGCTAAGGACTTTGCAAGTGCACTTCGAGAGGAAATTGA
GGAGGGTGTTAGAAGAGCAGGACAGGGAAAGGATTCCCAACCACCACCAA
CTCGGAAGTGA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:214678..215088- >Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00000904_pilon:214678..215088- (Gracilaria gracilis GNS1m male)
ATGGGACCGGGGGGTCTGTTTTCAAGAATTGCTCAATGGTTGGCAAATGA
ACTTATCGTCAAAGGTCTATCGAACAACCATGCTTTCCAACGTTTCGCCG
TTCGCTCGTCTCAACAAGTCAAAGAACTGTCAAAGTCGGCAGCAGAGGCT
GCAAAAAACATATCCGAGAGTGAGAGTTGGGTGCAAATGAGAAAGGAATC
TGAGGCACTTCGGAACCAAGCTAAGGACTTTGCAAGTGCACTTCGAGAGG
AAATTGAGGAGGGTGTTAGAAGAGCAGGACAGGGAAAGGATTCCCAACCA
CCACCAACTCGGAAGTGA back to top
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