Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FMY0 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 9.37e-11 |
| EggNOG OGs | 2EM9Y@1|root,2SQZZ@2759|Eukaryota |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10562.t1.start1 | Ggra10562.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 204542..204544 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10562.t1.stop1 | Ggra10562.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 205511..205513 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp
MGDSSGPDSGSSEVDLLITGHPGLILCAGIHPQFLDRTGENWNQRLERNT
NPQRRRLLSLSFWMSLSPMTAFVPTLPIFHPQQSIPKTKHIPTKTSALRH
RQRPSIAPWFVCVQQKDAPRPKSGVSDMKQKLFTKLQSLDRGLDIDPDAE
TMTAEEADVEEAIEVLEDNYPPQLPTRDQRLSGRWRLAYTSSAITRYFGG
VTGLQRLLPNATVGDITQTIDMEDGTSTFEEHVTFELPVIGNEVSLDVLV
QGRLRATNEERQIWEPENVKCGFLSWFADSWKTFRAFQIADITYLDDDLR
VTRGQTGSVAVFRKTAENNQEDT* back to topspliced messenger RNA >Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000904_pilon:204542..205513+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGAGATAGTAGCGGCCCCGATAGTGGCAGCTCCGAGGTTGATTTGCT
CATCACAGGGCATCCAGGCCTCATCCTGTGCGCTGGTATCCATCCCCAAT
TCCTCGATCGCACTGGGGAGAATTGGAACCAAAGACTTGAAAGGAATACT
AATCCACAGCGACGAAGACTTCTGTCATTGTCATTCTGGATGTCGCTCTC
CCCAATGACAGCGTTTGTTCCGACGCTTCCGATTTTTCATCCCCAGCAAA
GCATCCCAAAAACAAAACACATCCCAACCAAAACATCTGCTTTGCGTCAT
CGTCAACGACCTTCAATTGCGCCATGGTTCGTTTGCGTGCAACAGAAAGA
CGCACCACGTCCTAAATCTGGGGTGTCGGACATGAAACAAAAGCTTTTCA
CAAAGCTACAAAGCTTGGACCGGGGACTGGACATTGACCCAGACGCCGAG
ACAATGACTGCGGAAGAAGCTGACGTAGAGGAAGCAATCGAAGTGCTTGA
GGACAATTACCCACCACAGTTACCAACAAGAGACCAGAGACTGTCTGGGC
GATGGCGTCTAGCATATACATCCAGCGCCATCACTCGATACTTTGGCGGC
GTCACGGGTCTTCAGCGCTTACTGCCGAACGCCACCGTCGGTGACATTAC
TCAAACTATTGACATGGAAGATGGAACGAGTACCTTCGAGGAGCATGTAA
CGTTCGAACTTCCCGTCATAGGAAACGAAGTTTCTTTGGATGTTCTAGTA
CAAGGACGACTAAGAGCGACAAATGAAGAGCGTCAAATCTGGGAGCCGGA
AAATGTGAAGTGTGGTTTCCTCAGCTGGTTCGCAGATAGCTGGAAAACCT
TTCGCGCTTTTCAGATTGCTGACATTACGTATCTCGATGACGACTTACGC
GTAACACGGGGCCAAACAGGAAGCGTGGCCGTTTTCCGGAAAACAGCAGA
GAACAATCAGGAAGACACATAG back to topprotein sequence of Ggra10562.t1 >Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MGDSSGPDSGSSEVDLLITGHPGLILCAGIHPQFLDRTGENWNQRLERNT
NPQRRRLLSLSFWMSLSPMTAFVPTLPIFHPQQSIPKTKHIPTKTSALRH
RQRPSIAPWFVCVQQKDAPRPKSGVSDMKQKLFTKLQSLDRGLDIDPDAE
TMTAEEADVEEAIEVLEDNYPPQLPTRDQRLSGRWRLAYTSSAITRYFGG
VTGLQRLLPNATVGDITQTIDMEDGTSTFEEHVTFELPVIGNEVSLDVLV
QGRLRATNEERQIWEPENVKCGFLSWFADSWKTFRAFQIADITYLDDDLR
VTRGQTGSVAVFRKTAENNQEDT* back to topmRNA from alignment at tig00000904_pilon:204542..205513+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000904_pilon:204542..205513+ (Gracilaria gracilis GNS1m male)
ATGGGAGATAGTAGCGGCCCCGATAGTGGCAGCTCCGAGGTTGATTTGCT
CATCACAGGGCATCCAGGCCTCATCCTGTGCGCTGGTATCCATCCCCAAT
TCCTCGATCGCACTGGGGAGAATTGGAACCAAAGACTTGAAAGGAATACT
AATCCACAGCGACGAAGACTTCTGTCATTGTCATTCTGGATGTCGCTCTC
CCCAATGACAGCGTTTGTTCCGACGCTTCCGATTTTTCATCCCCAGCAAA
GCATCCCAAAAACAAAACACATCCCAACCAAAACATCTGCTTTGCGTCAT
CGTCAACGACCTTCAATTGCGCCATGGTTCGTTTGCGTGCAACAGAAAGA
CGCACCACGTCCTAAATCTGGGGTGTCGGACATGAAACAAAAGCTTTTCA
CAAAGCTACAAAGCTTGGACCGGGGACTGGACATTGACCCAGACGCCGAG
ACAATGACTGCGGAAGAAGCTGACGTAGAGGAAGCAATCGAAGTGCTTGA
GGACAATTACCCACCACAGTTACCAACAAGAGACCAGAGACTGTCTGGGC
GATGGCGTCTAGCATATACATCCAGCGCCATCACTCGATACTTTGGCGGC
GTCACGGGTCTTCAGCGCTTACTGCCGAACGCCACCGTCGGTGACATTAC
TCAAACTATTGACATGGAAGATGGAACGAGTACCTTCGAGGAGCATGTAA
CGTTCGAACTTCCCGTCATAGGAAACGAAGTTTCTTTGGATGTTCTAGTA
CAAGGACGACTAAGAGCGACAAATGAAGAGCGTCAAATCTGGGAGCCGGA
AAATGTGAAGTGTGGTTTCCTCAGCTGGTTCGCAGATAGCTGGAAAACCT
TTCGCGCTTTTCAGATTGCTGACATTACGTATCTCGATGACGACTTACGC
GTAACACGGGGCCAAACAGGAAGCGTGGCCGTTTTCCGGAAAACAGCAGA
GAACAATCAGGAAGACACATAG back to topCoding sequence (CDS) from alignment at tig00000904_pilon:204542..205513+ >Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000904_pilon:204542..205513+ (Gracilaria gracilis GNS1m male)
ATGGGAGATAGTAGCGGCCCCGATAGTGGCAGCTCCGAGGTTGATTTGCT
CATCACAGGGCATCCAGGCCTCATCCTGTGCGCTGGTATCCATCCCCAAT
TCCTCGATCGCACTGGGGAGAATTGGAACCAAAGACTTGAAAGGAATACT
AATCCACAGCGACGAAGACTTCTGTCATTGTCATTCTGGATGTCGCTCTC
CCCAATGACAGCGTTTGTTCCGACGCTTCCGATTTTTCATCCCCAGCAAA
GCATCCCAAAAACAAAACACATCCCAACCAAAACATCTGCTTTGCGTCAT
CGTCAACGACCTTCAATTGCGCCATGGTTCGTTTGCGTGCAACAGAAAGA
CGCACCACGTCCTAAATCTGGGGTGTCGGACATGAAACAAAAGCTTTTCA
CAAAGCTACAAAGCTTGGACCGGGGACTGGACATTGACCCAGACGCCGAG
ACAATGACTGCGGAAGAAGCTGACGTAGAGGAAGCAATCGAAGTGCTTGA
GGACAATTACCCACCACAGTTACCAACAAGAGACCAGAGACTGTCTGGGC
GATGGCGTCTAGCATATACATCCAGCGCCATCACTCGATACTTTGGCGGC
GTCACGGGTCTTCAGCGCTTACTGCCGAACGCCACCGTCGGTGACATTAC
TCAAACTATTGACATGGAAGATGGAACGAGTACCTTCGAGGAGCATGTAA
CGTTCGAACTTCCCGTCATAGGAAACGAAGTTTCTTTGGATGTTCTAGTA
CAAGGACGACTAAGAGCGACAAATGAAGAGCGTCAAATCTGGGAGCCGGA
AAATGTGAAGTGTGGTTTCCTCAGCTGGTTCGCAGATAGCTGGAAAACCT
TTCGCGCTTTTCAGATTGCTGACATTACGTATCTCGATGACGACTTACGC
GTAACACGGGGCCAAACAGGAAGCGTGGCCGTTTTCCGGAAAACAGCAGA
GAACAATCAGGAAGACACATAG back to top
|