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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 157072.XP_008878878.1 |
| Preferred name | APEX1 |
| PFAMs | Exo_endo_phos |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K01142,ko:K10771 |
| KEGG Pathway | ko03410,map03410 |
| KEGG Module | M00296 |
| GOs | GO:0000228,GO:0000302,GO:0000723,GO:0000781,GO:0000784,GO:0001947,GO:0002009,GO:0002119,GO:0002164,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003143,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003691,GO:0003712,GO:0003713,GO:0003714,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004523,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0004540,GO:0004844,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005813,GO:0005815,GO:0005840,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006286,GO:0006304,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007275,GO:0007346,GO:0007368,GO:0007389,GO:0007507,GO:0007568,GO:0008015,GO:0008081,GO:0008134,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010941,GO:0012505,GO:0014070,GO:0014074,GO:0014910,GO:0014912,GO:0015630,GO:0016043,GO:0016070,GO:0016311,GO:0016491,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016798,GO:0016799,GO:0016888,GO:0016889,GO:0016890,GO:0016891,GO:0016893,GO:0016894,GO:0016895,GO:0019104,GO:0019219,GO:0019222,GO:0019725,GO:0030334,GO:0030336,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0035050,GO:0035239,GO:0035295,GO:0035510,GO:0035690,GO:0040012,GO:0040013,GO:0042162,GO:0042221,GO:0042493,GO:0042542,GO:0042578,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043412,GO:0043434,GO:0043487,GO:0043488,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044728,GO:0044877,GO:0045454,GO:0045787,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046683,GO:0046872,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051271,GO:0051276,GO:0051591,GO:0051716,GO:0051726,GO:0052720,GO:0055114,GO:0060047,GO:0060249,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0061013,GO:0061371,GO:0065007,GO:0065008,GO:0070013,GO:0070301,GO:0070887,GO:0070988,GO:0071236,GO:0071310,GO:0071320,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080111,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097237,GO:0097506,GO:0097698,GO:0098501,GO:0098502,GO:0098687,GO:0140097,GO:0140098,GO:0140110,GO:1900087,GO:1901360,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902679,GO:1902680,GO:1902806,GO:1902808,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1990904,GO:2000045,GO:2000145,GO:2000146,GO:2001141 |
| Evalue | 5.36e-54 |
| EggNOG OGs | COG0708@1|root,KOG1294@2759|Eukaryota |
| EC | 3.1.11.2,4.2.99.18 |
| Description | double-stranded DNA 3'-5' exodeoxyribonuclease activity |
| COG category | L |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10561.t1.start1 | Ggra10561.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 201840..201842 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10561.t1.stop1 | Ggra10561.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 203088..203090 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MSQTPRRSARLCLRDGPAKAASHPDKERKPSKPSTRKVAQPDVEEKLENS
STSGIRASAKGSATSEPQSEGNGRGKRRSRTKSESKSANPTAAKRKKRVK
VADSNIDDNGKANSVDTLPKSIYPEDHTNRSYEIPSGILRVVTWNVASFR
TVFKSGAFQSYLEKENPHILCLQETKMSDEATSGIPTIDGYDIHWNHSRA
KKGYYGVAMFINNNINSLKLKLDRVEHGMGDEVADAEGRVLSLYFSNGLA
IVNSYVPNSGGKLMRLDYRTATFEPKMRHFLNQKAENWNVLYCGDLNVAH
EEIDIHDSKGNKKSAGHTPEERTEFGRLLNSGTGWVDCWRKLYTDYPGYT
YYSRRFGTRLKEAGKGWRLDYHLVDTKTFELGALSDCFVRPNVEGSDHYP
LILDYRISGNSNKSGS* back to topspliced messenger RNA >Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000904_pilon:201840..203090+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTCAAACTCCACGCCGAAGTGCCCGTCTTTGCCTTCGAGATGGGCC
TGCAAAGGCAGCGTCTCACCCTGACAAGGAAAGGAAACCATCGAAACCAA
GCACCAGAAAGGTGGCACAACCAGATGTGGAAGAGAAGCTGGAAAATAGC
AGCACCAGTGGAATCAGAGCCTCAGCCAAAGGATCAGCAACATCTGAACC
ACAGAGCGAGGGTAACGGTCGTGGTAAGAGGCGTAGTAGAACGAAGTCGG
AATCGAAGAGTGCTAATCCCACTGCCGCGAAACGAAAGAAAAGAGTTAAA
GTCGCCGATTCCAACATCGACGATAATGGAAAGGCTAATTCTGTGGACAC
TCTTCCCAAATCTATATATCCTGAAGATCATACAAACAGGTCTTACGAAA
TTCCTTCTGGAATCTTGCGTGTGGTTACCTGGAACGTTGCATCCTTTAGA
ACCGTGTTCAAGTCAGGAGCCTTTCAATCGTATCTGGAAAAGGAAAATCC
ACATATTCTATGCCTTCAAGAAACAAAGATGAGTGACGAAGCCACGAGTG
GAATCCCTACAATTGATGGGTATGACATACACTGGAATCACTCTAGGGCG
AAGAAGGGCTATTATGGGGTCGCGATGTTCATTAATAACAACATCAATTC
CCTGAAATTGAAACTGGACAGAGTGGAGCACGGGATGGGAGACGAGGTTG
CCGATGCCGAAGGTAGAGTACTGTCATTATATTTCAGTAACGGTCTAGCA
ATCGTCAACTCGTACGTTCCAAACTCAGGCGGGAAGCTGATGCGTCTTGA
CTACAGAACCGCTACTTTCGAGCCCAAGATGAGGCACTTTCTTAACCAAA
AGGCGGAGAACTGGAATGTTTTATATTGCGGTGACTTGAATGTTGCTCAT
GAGGAGATTGACATCCACGATAGCAAAGGCAATAAGAAAAGTGCTGGGCA
TACTCCAGAGGAAAGAACAGAATTCGGCCGTTTACTCAACAGTGGGACAG
GTTGGGTGGACTGCTGGAGAAAACTCTACACAGACTACCCGGGATATACT
TACTACTCCCGAAGGTTCGGAACCCGCCTGAAGGAGGCTGGGAAAGGCTG
GCGTTTAGACTATCACCTTGTTGACACCAAAACATTCGAGCTTGGGGCCC
TAAGTGACTGCTTCGTGCGCCCCAATGTAGAAGGCAGTGATCATTACCCC
CTTATTCTAGATTACCGAATATCTGGCAACTCGAACAAGTCCGGTAGTTG
A back to topprotein sequence of Ggra10561.t1 >Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MSQTPRRSARLCLRDGPAKAASHPDKERKPSKPSTRKVAQPDVEEKLENS
STSGIRASAKGSATSEPQSEGNGRGKRRSRTKSESKSANPTAAKRKKRVK
VADSNIDDNGKANSVDTLPKSIYPEDHTNRSYEIPSGILRVVTWNVASFR
TVFKSGAFQSYLEKENPHILCLQETKMSDEATSGIPTIDGYDIHWNHSRA
KKGYYGVAMFINNNINSLKLKLDRVEHGMGDEVADAEGRVLSLYFSNGLA
IVNSYVPNSGGKLMRLDYRTATFEPKMRHFLNQKAENWNVLYCGDLNVAH
EEIDIHDSKGNKKSAGHTPEERTEFGRLLNSGTGWVDCWRKLYTDYPGYT
YYSRRFGTRLKEAGKGWRLDYHLVDTKTFELGALSDCFVRPNVEGSDHYP
LILDYRISGNSNKSGS* back to topmRNA from alignment at tig00000904_pilon:201840..203090+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000904_pilon:201840..203090+ (Gracilaria gracilis GNS1m male)
ATGTCTCAAACTCCACGCCGAAGTGCCCGTCTTTGCCTTCGAGATGGGCC
TGCAAAGGCAGCGTCTCACCCTGACAAGGAAAGGAAACCATCGAAACCAA
GCACCAGAAAGGTGGCACAACCAGATGTGGAAGAGAAGCTGGAAAATAGC
AGCACCAGTGGAATCAGAGCCTCAGCCAAAGGATCAGCAACATCTGAACC
ACAGAGCGAGGGTAACGGTCGTGGTAAGAGGCGTAGTAGAACGAAGTCGG
AATCGAAGAGTGCTAATCCCACTGCCGCGAAACGAAAGAAAAGAGTTAAA
GTCGCCGATTCCAACATCGACGATAATGGAAAGGCTAATTCTGTGGACAC
TCTTCCCAAATCTATATATCCTGAAGATCATACAAACAGGTCTTACGAAA
TTCCTTCTGGAATCTTGCGTGTGGTTACCTGGAACGTTGCATCCTTTAGA
ACCGTGTTCAAGTCAGGAGCCTTTCAATCGTATCTGGAAAAGGAAAATCC
ACATATTCTATGCCTTCAAGAAACAAAGATGAGTGACGAAGCCACGAGTG
GAATCCCTACAATTGATGGGTATGACATACACTGGAATCACTCTAGGGCG
AAGAAGGGCTATTATGGGGTCGCGATGTTCATTAATAACAACATCAATTC
CCTGAAATTGAAACTGGACAGAGTGGAGCACGGGATGGGAGACGAGGTTG
CCGATGCCGAAGGTAGAGTACTGTCATTATATTTCAGTAACGGTCTAGCA
ATCGTCAACTCGTACGTTCCAAACTCAGGCGGGAAGCTGATGCGTCTTGA
CTACAGAACCGCTACTTTCGAGCCCAAGATGAGGCACTTTCTTAACCAAA
AGGCGGAGAACTGGAATGTTTTATATTGCGGTGACTTGAATGTTGCTCAT
GAGGAGATTGACATCCACGATAGCAAAGGCAATAAGAAAAGTGCTGGGCA
TACTCCAGAGGAAAGAACAGAATTCGGCCGTTTACTCAACAGTGGGACAG
GTTGGGTGGACTGCTGGAGAAAACTCTACACAGACTACCCGGGATATACT
TACTACTCCCGAAGGTTCGGAACCCGCCTGAAGGAGGCTGGGAAAGGCTG
GCGTTTAGACTATCACCTTGTTGACACCAAAACATTCGAGCTTGGGGCCC
TAAGTGACTGCTTCGTGCGCCCCAATGTAGAAGGCAGTGATCATTACCCC
CTTATTCTAGATTACCGAATATCTGGCAACTCGAACAAGTCCGGTAGTTG
A back to topCoding sequence (CDS) from alignment at tig00000904_pilon:201840..203090+ >Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000904_pilon:201840..203090+ (Gracilaria gracilis GNS1m male)
ATGTCTCAAACTCCACGCCGAAGTGCCCGTCTTTGCCTTCGAGATGGGCC
TGCAAAGGCAGCGTCTCACCCTGACAAGGAAAGGAAACCATCGAAACCAA
GCACCAGAAAGGTGGCACAACCAGATGTGGAAGAGAAGCTGGAAAATAGC
AGCACCAGTGGAATCAGAGCCTCAGCCAAAGGATCAGCAACATCTGAACC
ACAGAGCGAGGGTAACGGTCGTGGTAAGAGGCGTAGTAGAACGAAGTCGG
AATCGAAGAGTGCTAATCCCACTGCCGCGAAACGAAAGAAAAGAGTTAAA
GTCGCCGATTCCAACATCGACGATAATGGAAAGGCTAATTCTGTGGACAC
TCTTCCCAAATCTATATATCCTGAAGATCATACAAACAGGTCTTACGAAA
TTCCTTCTGGAATCTTGCGTGTGGTTACCTGGAACGTTGCATCCTTTAGA
ACCGTGTTCAAGTCAGGAGCCTTTCAATCGTATCTGGAAAAGGAAAATCC
ACATATTCTATGCCTTCAAGAAACAAAGATGAGTGACGAAGCCACGAGTG
GAATCCCTACAATTGATGGGTATGACATACACTGGAATCACTCTAGGGCG
AAGAAGGGCTATTATGGGGTCGCGATGTTCATTAATAACAACATCAATTC
CCTGAAATTGAAACTGGACAGAGTGGAGCACGGGATGGGAGACGAGGTTG
CCGATGCCGAAGGTAGAGTACTGTCATTATATTTCAGTAACGGTCTAGCA
ATCGTCAACTCGTACGTTCCAAACTCAGGCGGGAAGCTGATGCGTCTTGA
CTACAGAACCGCTACTTTCGAGCCCAAGATGAGGCACTTTCTTAACCAAA
AGGCGGAGAACTGGAATGTTTTATATTGCGGTGACTTGAATGTTGCTCAT
GAGGAGATTGACATCCACGATAGCAAAGGCAATAAGAAAAGTGCTGGGCA
TACTCCAGAGGAAAGAACAGAATTCGGCCGTTTACTCAACAGTGGGACAG
GTTGGGTGGACTGCTGGAGAAAACTCTACACAGACTACCCGGGATATACT
TACTACTCCCGAAGGTTCGGAACCCGCCTGAAGGAGGCTGGGAAAGGCTG
GCGTTTAGACTATCACCTTGTTGACACCAAAACATTCGAGCTTGGGGCCC
TAAGTGACTGCTTCGTGCGCCCCAATGTAGAAGGCAGTGATCATTACCCC
CTTATTCTAGATTACCGAATATCTGGCAACTCGAACAAGTCCGGTAGTTG
A back to top
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