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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 102125.Xen7305DRAFT_00035040 |
| PFAMs | Amino_oxidase,NAD_binding_8 |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG rclass | RC01960 |
| KEGG ko | ko:K09835 |
| KEGG Reaction | R07512 |
| KEGG Pathway | ko00906,ko01100,ko01110,map00906,map01100,map01110 |
| KEGG Module | M00097 |
| Evalue | 9.13e-133 |
| EggNOG OGs | COG1233@1|root,COG1233@2|Bacteria,1G0AY@1117|Cyanobacteria,3VHQG@52604|Pleurocapsales |
| EC | 5.2.1.13 |
| Description | FAD dependent oxidoreductase |
| COG category | Q |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra1056.t1.start1 | Ggra1056.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000868_pilon 69825..69827 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MVTAAFSSFCGVSVLDNRYPVCQSQGLAHQRPVTHSYNGRVSIRSSMSEE
SYDIITIGSGLGGLCASALLSTYGLRTLTLESHSEPGGAAHCFSRRTPHG
TVTFESGPHLFSGLQYPSENPMYHVLRAVDAKLDVTRYDTWGVFLPNTYV
RTTLRAREPLFEQLLKVAGGPTAHTDMNNLTNVLRPLGEAATLLPPAALR
AADILGSLRVAARYILSPSSLSHIPRISQLSSPFSTILDRFVSDEFSRNF
LNLLCFLLAGTTAERVPVAEVAFMFREWLGDDAVIGSPVLQRPVGGASAV
AKALIEAIERRHGVVQTGSHVSSVIIDGGRATGVQLKSGRTIRANKAVIS
NVSAMDVNRLLPGWKTNVDNLGMDKSAGDMCPSFMHLHVAIELTEEIRSR
LPHGTLEPNYVCIENWALGLEHPDNVVLISVPSVLDEDLCPAGHAVLHAY
TPATEPFENWRNLEPGTPEYEEFKGKRSQILWKAVNRVFGTDIRSKAYVK
LVGTPRTHARFLRRHDGSYGPKVDARQGGLGIPFPGTGGYPKGFYCVGDG
VFPGVGVPAVAGSAWIVANGLVSVKEQVELLRKIGL* back to topspliced messenger RNA >Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000868_pilon:68067..69827- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTACTGCCGCCTTTAGCTCGTTCTGTGGAGTTTCGGTTCTTGACAA
CCGATATCCAGTCTGCCAGTCGCAAGGACTTGCACACCAAAGACCAGTCA
CTCACAGCTATAATGGTAGAGTTTCCATTCGGAGTTCCATGTCGGAGGAA
AGTTACGATATTATCACAATAGGGTCAGGGTTGGGAGGTCTCTGCGCATC
AGCATTGCTATCTACATATGGCCTACGCACACTCACGCTCGAATCTCATT
CGGAGCCTGGTGGAGCAGCTCATTGCTTTTCAAGAAGAACTCCTCACGGG
ACCGTAACTTTTGAGTCAGGGCCGCATTTATTCTCAGGTCTTCAGTATCC
ATCCGAGAACCCTATGTACCATGTCTTGCGTGCCGTTGATGCAAAACTTG
ATGTCACACGCTATGATACATGGGGGGTATTCTTACCGAATACATATGTG
CGAACAACTCTTCGAGCTCGAGAGCCCCTTTTTGAACAACTTCTCAAAGT
AGCCGGAGGTCCAACAGCCCATACCGATATGAACAATCTTACAAATGTTT
TGCGCCCCCTAGGGGAAGCCGCAACTTTATTACCACCCGCAGCACTCCGT
GCCGCTGATATTCTTGGTTCTCTTCGAGTTGCTGCTCGGTACATATTATC
CCCGAGCTCCCTGTCGCATATCCCACGTATATCGCAACTGTCGAGCCCCT
TTTCCACCATCCTAGATCGTTTCGTATCCGACGAGTTCTCCCGCAACTTT
CTAAATCTTTTGTGCTTCTTACTTGCCGGAACAACGGCAGAACGAGTCCC
CGTCGCTGAAGTAGCTTTTATGTTTCGTGAGTGGCTCGGGGATGACGCTG
TTATAGGTTCGCCCGTACTACAACGGCCAGTAGGAGGGGCTTCTGCTGTA
GCAAAGGCTCTCATCGAAGCCATAGAAAGACGACATGGTGTCGTACAGAC
GGGATCTCACGTGAGTAGCGTTATCATTGACGGTGGTCGTGCAACCGGGG
TACAATTAAAATCTGGTCGTACCATCCGCGCAAACAAAGCCGTCATTTCG
AACGTCTCTGCTATGGATGTTAACCGCTTACTACCAGGGTGGAAAACTAA
TGTCGACAACCTTGGTATGGACAAAAGTGCTGGGGATATGTGTCCGTCCT
TCATGCACCTTCACGTTGCCATAGAATTAACTGAAGAGATTCGATCTCGC
TTACCTCATGGAACTCTGGAACCCAATTATGTTTGCATTGAGAACTGGGC
TCTTGGATTGGAGCATCCGGATAATGTAGTTCTTATCAGTGTGCCGTCCG
TGTTGGATGAAGATCTATGTCCAGCTGGTCACGCAGTGTTGCATGCTTAT
ACACCAGCCACGGAACCGTTCGAAAACTGGAGAAATTTGGAGCCTGGGAC
TCCTGAGTACGAAGAATTCAAAGGGAAACGCTCACAAATCTTATGGAAGG
CTGTTAATCGCGTCTTCGGCACTGATATTCGCTCTAAAGCCTATGTCAAA
CTCGTCGGTACACCGCGGACCCATGCTCGATTTCTTCGCAGACATGATGG
TTCGTATGGTCCGAAGGTTGACGCAAGGCAAGGCGGTTTGGGAATTCCAT
TTCCTGGAACTGGTGGTTATCCCAAAGGGTTTTATTGTGTAGGTGATGGT
GTGTTTCCTGGGGTTGGGGTTCCTGCTGTAGCTGGGAGTGCCTGGATTGT
AGCGAACGGATTAGTGAGTGTTAAAGAACAAGTAGAACTTCTGAGGAAAA
TTGGTTTATGA back to topprotein sequence of Ggra1056.t1 >Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MVTAAFSSFCGVSVLDNRYPVCQSQGLAHQRPVTHSYNGRVSIRSSMSEE
SYDIITIGSGLGGLCASALLSTYGLRTLTLESHSEPGGAAHCFSRRTPHG
TVTFESGPHLFSGLQYPSENPMYHVLRAVDAKLDVTRYDTWGVFLPNTYV
RTTLRAREPLFEQLLKVAGGPTAHTDMNNLTNVLRPLGEAATLLPPAALR
AADILGSLRVAARYILSPSSLSHIPRISQLSSPFSTILDRFVSDEFSRNF
LNLLCFLLAGTTAERVPVAEVAFMFREWLGDDAVIGSPVLQRPVGGASAV
AKALIEAIERRHGVVQTGSHVSSVIIDGGRATGVQLKSGRTIRANKAVIS
NVSAMDVNRLLPGWKTNVDNLGMDKSAGDMCPSFMHLHVAIELTEEIRSR
LPHGTLEPNYVCIENWALGLEHPDNVVLISVPSVLDEDLCPAGHAVLHAY
TPATEPFENWRNLEPGTPEYEEFKGKRSQILWKAVNRVFGTDIRSKAYVK
LVGTPRTHARFLRRHDGSYGPKVDARQGGLGIPFPGTGGYPKGFYCVGDG
VFPGVGVPAVAGSAWIVANGLVSVKEQVELLRKIGL* back to topmRNA from alignment at tig00000868_pilon:68067..69827- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000868_pilon:68067..69827- (Gracilaria gracilis GNS1m male)
ATGGTTACTGCCGCCTTTAGCTCGTTCTGTGGAGTTTCGGTTCTTGACAA
CCGATATCCAGTCTGCCAGTCGCAAGGACTTGCACACCAAAGACCAGTCA
CTCACAGCTATAATGGTAGAGTTTCCATTCGGAGTTCCATGTCGGAGGAA
AGTTACGATATTATCACAATAGGGTCAGGGTTGGGAGGTCTCTGCGCATC
AGCATTGCTATCTACATATGGCCTACGCACACTCACGCTCGAATCTCATT
CGGAGCCTGGTGGAGCAGCTCATTGCTTTTCAAGAAGAACTCCTCACGGG
ACCGTAACTTTTGAGTCAGGGCCGCATTTATTCTCAGGTCTTCAGTATCC
ATCCGAGAACCCTATGTACCATGTCTTGCGTGCCGTTGATGCAAAACTTG
ATGTCACACGCTATGATACATGGGGGGTATTCTTACCGAATACATATGTG
CGAACAACTCTTCGAGCTCGAGAGCCCCTTTTTGAACAACTTCTCAAAGT
AGCCGGAGGTCCAACAGCCCATACCGATATGAACAATCTTACAAATGTTT
TGCGCCCCCTAGGGGAAGCCGCAACTTTATTACCACCCGCAGCACTCCGT
GCCGCTGATATTCTTGGTTCTCTTCGAGTTGCTGCTCGGTACATATTATC
CCCGAGCTCCCTGTCGCATATCCCACGTATATCGCAACTGTCGAGCCCCT
TTTCCACCATCCTAGATCGTTTCGTATCCGACGAGTTCTCCCGCAACTTT
CTAAATCTTTTGTGCTTCTTACTTGCCGGAACAACGGCAGAACGAGTCCC
CGTCGCTGAAGTAGCTTTTATGTTTCGTGAGTGGCTCGGGGATGACGCTG
TTATAGGTTCGCCCGTACTACAACGGCCAGTAGGAGGGGCTTCTGCTGTA
GCAAAGGCTCTCATCGAAGCCATAGAAAGACGACATGGTGTCGTACAGAC
GGGATCTCACGTGAGTAGCGTTATCATTGACGGTGGTCGTGCAACCGGGG
TACAATTAAAATCTGGTCGTACCATCCGCGCAAACAAAGCCGTCATTTCG
AACGTCTCTGCTATGGATGTTAACCGCTTACTACCAGGGTGGAAAACTAA
TGTCGACAACCTTGGTATGGACAAAAGTGCTGGGGATATGTGTCCGTCCT
TCATGCACCTTCACGTTGCCATAGAATTAACTGAAGAGATTCGATCTCGC
TTACCTCATGGAACTCTGGAACCCAATTATGTTTGCATTGAGAACTGGGC
TCTTGGATTGGAGCATCCGGATAATGTAGTTCTTATCAGTGTGCCGTCCG
TGTTGGATGAAGATCTATGTCCAGCTGGTCACGCAGTGTTGCATGCTTAT
ACACCAGCCACGGAACCGTTCGAAAACTGGAGAAATTTGGAGCCTGGGAC
TCCTGAGTACGAAGAATTCAAAGGGAAACGCTCACAAATCTTATGGAAGG
CTGTTAATCGCGTCTTCGGCACTGATATTCGCTCTAAAGCCTATGTCAAA
CTCGTCGGTACACCGCGGACCCATGCTCGATTTCTTCGCAGACATGATGG
TTCGTATGGTCCGAAGGTTGACGCAAGGCAAGGCGGTTTGGGAATTCCAT
TTCCTGGAACTGGTGGTTATCCCAAAGGGTTTTATTGTGTAGGTGATGGT
GTGTTTCCTGGGGTTGGGGTTCCTGCTGTAGCTGGGAGTGCCTGGATTGT
AGCGAACGGATTAGTGAGTGTTAAAGAACAAGTAGAACTTCTGAGGAAAA
TTGGTTTATGA back to topCoding sequence (CDS) from alignment at tig00000868_pilon:68067..69827- >Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000868_pilon:68067..69827- (Gracilaria gracilis GNS1m male)
ATGGTTACTGCCGCCTTTAGCTCGTTCTGTGGAGTTTCGGTTCTTGACAA
CCGATATCCAGTCTGCCAGTCGCAAGGACTTGCACACCAAAGACCAGTCA
CTCACAGCTATAATGGTAGAGTTTCCATTCGGAGTTCCATGTCGGAGGAA
AGTTACGATATTATCACAATAGGGTCAGGGTTGGGAGGTCTCTGCGCATC
AGCATTGCTATCTACATATGGCCTACGCACACTCACGCTCGAATCTCATT
CGGAGCCTGGTGGAGCAGCTCATTGCTTTTCAAGAAGAACTCCTCACGGG
ACCGTAACTTTTGAGTCAGGGCCGCATTTATTCTCAGGTCTTCAGTATCC
ATCCGAGAACCCTATGTACCATGTCTTGCGTGCCGTTGATGCAAAACTTG
ATGTCACACGCTATGATACATGGGGGGTATTCTTACCGAATACATATGTG
CGAACAACTCTTCGAGCTCGAGAGCCCCTTTTTGAACAACTTCTCAAAGT
AGCCGGAGGTCCAACAGCCCATACCGATATGAACAATCTTACAAATGTTT
TGCGCCCCCTAGGGGAAGCCGCAACTTTATTACCACCCGCAGCACTCCGT
GCCGCTGATATTCTTGGTTCTCTTCGAGTTGCTGCTCGGTACATATTATC
CCCGAGCTCCCTGTCGCATATCCCACGTATATCGCAACTGTCGAGCCCCT
TTTCCACCATCCTAGATCGTTTCGTATCCGACGAGTTCTCCCGCAACTTT
CTAAATCTTTTGTGCTTCTTACTTGCCGGAACAACGGCAGAACGAGTCCC
CGTCGCTGAAGTAGCTTTTATGTTTCGTGAGTGGCTCGGGGATGACGCTG
TTATAGGTTCGCCCGTACTACAACGGCCAGTAGGAGGGGCTTCTGCTGTA
GCAAAGGCTCTCATCGAAGCCATAGAAAGACGACATGGTGTCGTACAGAC
GGGATCTCACGTGAGTAGCGTTATCATTGACGGTGGTCGTGCAACCGGGG
TACAATTAAAATCTGGTCGTACCATCCGCGCAAACAAAGCCGTCATTTCG
AACGTCTCTGCTATGGATGTTAACCGCTTACTACCAGGGTGGAAAACTAA
TGTCGACAACCTTGGTATGGACAAAAGTGCTGGGGATATGTGTCCGTCCT
TCATGCACCTTCACGTTGCCATAGAATTAACTGAAGAGATTCGATCTCGC
TTACCTCATGGAACTCTGGAACCCAATTATGTTTGCATTGAGAACTGGGC
TCTTGGATTGGAGCATCCGGATAATGTAGTTCTTATCAGTGTGCCGTCCG
TGTTGGATGAAGATCTATGTCCAGCTGGTCACGCAGTGTTGCATGCTTAT
ACACCAGCCACGGAACCGTTCGAAAACTGGAGAAATTTGGAGCCTGGGAC
TCCTGAGTACGAAGAATTCAAAGGGAAACGCTCACAAATCTTATGGAAGG
CTGTTAATCGCGTCTTCGGCACTGATATTCGCTCTAAAGCCTATGTCAAA
CTCGTCGGTACACCGCGGACCCATGCTCGATTTCTTCGCAGACATGATGG
TTCGTATGGTCCGAAGGTTGACGCAAGGCAAGGCGGTTTGGGAATTCCAT
TTCCTGGAACTGGTGGTTATCCCAAAGGGTTTTATTGTGTAGGTGATGGT
GTGTTTCCTGGGGTTGGGGTTCCTGCTGTAGCTGGGAGTGCCTGGATTGT
AGCGAACGGATTAGTGAGTGTTAAAGAACAAGTAGAACTTCTGAGGAAAA
TTGGTTTATGA back to top
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