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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 9031.ENSGALP00000023415 |
| Preferred name | WBSCR22 |
| PFAMs | Methyltransf_11,Methyltransf_25,WBS_methylT |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K19306 |
| GOs | GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:2000232,GO:2000234 |
| Evalue | 3.1e-78 |
| EggNOG OGs | COG0500@1|root,KOG1541@2759|Eukaryota,38E9S@33154|Opisthokonta,3BBY9@33208|Metazoa,3CSCU@33213|Bilateria,48BJB@7711|Chordata,493H8@7742|Vertebrata,4GPQS@8782|Aves |
| EC | 2.1.1.309 |
| Description | syndrome chromosome region 22 |
| COG category | Q |
| BRITE | ko00000,ko01000,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10552.t1.stop1 | Ggra10552.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000904_pilon 168891..168893 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10552.t1.intron1 | Ggra10552.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000904_pilon 169109..169198 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10552.t1.start1 | Ggra10552.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000904_pilon 169725..169727 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10552.t1 ID=Ggra10552.t1|Name=Ggra10552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MSRRPEHAAPATEFYSEKGAAKYAASSRINAVQKTLAKRCVELLALPPDE
PCLLLDIGTGTGLSGDVLTQAGHHWVGTDVSQPMLDTALENDVDGDLMLA
DAGDGVAFRMGCFDGAISVSAVQWLCNADRSDHNPHKRLNAFFSTLYATL
RRGARAVLQFYPENVAQIELLVASAMPKGAVQPKPLGVEPNRNVSVGNRK
SNKKGNKSYDDAVTRKDWVISKKERRRRQGHMVRPDSKYTGRKRRVQF* back to topspliced messenger RNA >Ggra10552.t1 ID=Ggra10552.t1|Name=Ggra10552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000904_pilon:168891..169727- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTCGCCGTCCGGAGCACGCCGCCCCGGCCACCGAGTTCTACTCCGA
GAAAGGAGCTGCCAAGTACGCCGCCAGCTCGCGTATCAACGCCGTCCAGA
AGACGCTCGCGAAGCGCTGCGTGGAGCTGCTTGCGCTCCCGCCAGACGAG
CCATGTCTGCTGCTGGACATCGGAACAGGCACAGGTCTGTCCGGCGACGT
GCTCACACAAGCCGGTCATCACTGGGTCGGCACCGATGTGTCACAGCCCA
TGTTAGATACGGCGCTTGAGAATGACGTGGACGGCGATTTGATGCTGGCA
GACGCCGGCGACGGCGTGGCGTTTCGCATGGGCTGCTTCGATGGCGCCAT
TTCTGTCTCGGCTGTGCAGTGGCTGTGTAACGCTGATCGCTCGGATCACA
ATCCCCACAAGCGACTCAACGCATTCTTCTCCACGCTTTATGCCACCCTG
AGACGCGGCGCACGCGCCGTGTTGCAGTTTTATCCCGAGAATGTCGCACA
GATTGAACTACTCGTCGCGTCGGCAATGCCCAAGGGTGCCGTGCAGCCGA
AGCCGCTTGGAGTCGAACCGAACCGAAATGTGTCCGTCGGCAATCGCAAG
TCGAACAAGAAAGGCAACAAATCCTACGACGATGCCGTCACAAGGAAGGA
TTGGGTTATTTCGAAGAAAGAACGAAGGCGTCGCCAGGGCCATATGGTCA
GACCTGACTCCAAGTACACTGGCAGGAAACGAAGAGTCCAGTTTTGA back to topprotein sequence of Ggra10552.t1 >Ggra10552.t1 ID=Ggra10552.t1|Name=Ggra10552.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MSRRPEHAAPATEFYSEKGAAKYAASSRINAVQKTLAKRCVELLALPPDE
PCLLLDIGTGTGLSGDVLTQAGHHWVGTDVSQPMLDTALENDVDGDLMLA
DAGDGVAFRMGCFDGAISVSAVQWLCNADRSDHNPHKRLNAFFSTLYATL
RRGARAVLQFYPENVAQIELLVASAMPKGAVQPKPLGVEPNRNVSVGNRK
SNKKGNKSYDDAVTRKDWVISKKERRRRQGHMVRPDSKYTGRKRRVQF* back to topmRNA from alignment at tig00000904_pilon:168891..169727- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10552.t1 ID=Ggra10552.t1|Name=Ggra10552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000904_pilon:168891..169727- (Gracilaria gracilis GNS1m male)
ATGTCTCGCCGTCCGGAGCACGCCGCCCCGGCCACCGAGTTCTACTCCGA
GAAAGGAGCTGCCAAGTACGCCGCCAGCTCGCGTATCAACGCCGTCCAGA
AGACGCTCGCGAAGCGCTGCGTGGAGCTGCTTGCGCTCCCGCCAGACGAG
CCATGTCTGCTGCTGGACATCGGAACAGGCACAGGTCTGTCCGGCGACGT
GCTCACACAAGCCGGTCATCACTGGGTCGGCACCGATGTGTCACAGCCCA
TGTTAGATACGGCGCTTGAGAATGACGTGGACGGCGATTTGATGCTGGCA
GACGCCGGCGACGGCGTGGCGTTTCGCATGGGCTGCTTCGATGGCGCCAT
TTCTGTCTCGGCTGTGCAGTGGCTGTGTAACGCTGATCGCTCGGATCACA
ATCCCCACAAGCGACTCAACGCATTCTTCTCCACGCTTTATGCCACCCTG
AGACGCGGCGCACGCGCCGTGTTGCAGTTTTATCCCGAGAATGTCGCACA
GATTGAACTACTCGTCGCGTCGGCAATGCGTGCGGGCTTCAGTGGCGGCT
TGTTGGTTGATTACCCAAACAGTGCTAAAGCCAAAAAGTATTACCTCTGC
CTCACCGCTGGTCCCCCAGCCAAGGGTGCCGTGCAGCCGAAGCCGCTTGG
AGTCGAACCGAACCGAAATGTGTCCGTCGGCAATCGCAAGTCGAACAAGA
AAGGCAACAAATCCTACGACGATGCCGTCACAAGGAAGGATTGGGTTATT
TCGAAGAAAGAACGAAGGCGTCGCCAGGGCCATATGGTCAGACCTGACTC
CAAGTACACTGGCAGGAAACGAAGAGTCCAGTTTTGA back to topCoding sequence (CDS) from alignment at tig00000904_pilon:168891..169727- >Ggra10552.t1 ID=Ggra10552.t1|Name=Ggra10552.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000904_pilon:168891..169727- (Gracilaria gracilis GNS1m male)
ATGTCTCGCCGTCCGGAGCACGCCGCCCCGGCCACCGAGTTCTACTCCGA
GAAAGGAGCTGCCAAGTACGCCGCCAGCTCGCGTATCAACGCCGTCCAGA
AGACGCTCGCGAAGCGCTGCGTGGAGCTGCTTGCGCTCCCGCCAGACGAG
CCATGTCTGCTGCTGGACATCGGAACAGGCACAGGTCTGTCCGGCGACGT
GCTCACACAAGCCGGTCATCACTGGGTCGGCACCGATGTGTCACAGCCCA
TGTTAGATACGGCGCTTGAGAATGACGTGGACGGCGATTTGATGCTGGCA
GACGCCGGCGACGGCGTGGCGTTTCGCATGGGCTGCTTCGATGGCGCCAT
TTCTGTCTCGGCTGTGCAGTGGCTGTGTAACGCTGATCGCTCGGATCACA
ATCCCCACAAGCGACTCAACGCATTCTTCTCCACGCTTTATGCCACCCTG
AGACGCGGCGCACGCGCCGTGTTGCAGTTTTATCCCGAGAATGTCGCACA
GATTGAACTACTCGTCGCGTCGGCAATGCCCAAGGGTGCCGTGCAGCCGA
AGCCGCTTGGAGTCGAACCGAACCGAAATGTGTCCGTCGGCAATCGCAAG
TCGAACAAGAAAGGCAACAAATCCTACGACGATGCCGTCACAAGGAAGGA
TTGGGTTATTTCGAAGAAAGAACGAAGGCGTCGCCAGGGCCATATGGTCA
GACCTGACTCCAAGTACACTGGCAGGAAACGAAGAGTCCAGTTTTGA back to top
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