Ggra10550.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10550.t1
Unique Name	Ggra10550.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	398

Properties


Property Name	Value
Seed ortholog	130081.XP_005704433.1
Preferred name	PEX12
PFAMs	Pex2_Pex12
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03327,ko:K06653,ko:K13345
KEGG TC	2.A.66.1,3.A.20.1
KEGG Pathway	ko04111,ko04146,map04111,map04146
GOs	GO:0000003,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009653,GO:0009790,GO:0009791,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0042579,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048468,GO:0048515,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061630,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901575,GO:1990351,GO:1990415,GO:1990429
Evalue	1.95e-46
EggNOG OGs	KOG0826@1\|root,KOG0826@2759\|Eukaryota
Description	protein import into peroxisome matrix
COG category	O
BRITE	ko00000,ko00001,ko02000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10550	Ggra10550	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 165521..166891 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10550.t1	Ggra10550.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 165521..166891 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10550.t1.stop1	Ggra10550.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 165521..165523 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10550.t1.CDS1	Ggra10550.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 165521..165655 -
Ggra10550.t1.CDS2	Ggra10550.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 165738..165878 -
Ggra10550.t1.CDS3	Ggra10550.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 165974..166891 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10550.t1.exon1	Ggra10550.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 165521..165655 -
Ggra10550.t1.exon2	Ggra10550.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 165738..165878 -
Ggra10550.t1.exon3	Ggra10550.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 165974..166891 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10550.t1.intron1	Ggra10550.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000904_pilon 165656..165737 -
Ggra10550.t1.intron2	Ggra10550.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000904_pilon 165879..165973 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10550.t1.start1	Ggra10550.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 166889..166891 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:165521..166891-
coding sequence from alignment at tig00000904_pilon:165521..166891-

mRNA sequence

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MSNIPSARPSFFEVYAAEQLDGALRPAFRYVLEVVSIRNPSLLRLANWSD
ELFSFLLIILESFQLSTEAALLSESFYSLRRSTSDSFEPNVYNRPLSTRN
VLSSVVYAVLIPHIRAKLDNWYSVQTGGAAAVMLQELNVSQPQAEEAVVH
TTPLPARSLLSGGHTSIRSILRIALLRLLRFPTVLIRLIKASIGFAKSET
FKRQVLIYYPKIRAVVDAVNLIFGISYLYGHTKYYNLSFALQGLILRRVS
TMDLLRLSVVHSSGRSTTPLLHAIGNFFERTMSLLRIAFFASIFGFRFLQ
YYYAAEAAAPRDLGVVIPPPAPLEPATGVNRELATAPGKCPICHQDRTNS
TACTTSGYVFCYLCIVSSLQTTQKCPVTLAPTTIDDLVRVYENGGNT*

spliced messenger RNA

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000904_pilon:165521..166891- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATATTCCATCAGCTAGACCTTCATTCTTTGAGGTTTACGCAGC
TGAACAGCTCGATGGGGCGTTGAGACCAGCTTTCCGCTACGTTTTAGAAG
TGGTATCAATACGGAATCCTTCTCTCCTCCGACTGGCAAACTGGTCGGAT
GAATTGTTCTCGTTTCTTTTGATAATCCTGGAATCTTTTCAGTTAAGCAC
TGAGGCTGCTCTCTTATCTGAATCATTCTATTCTCTTCGAAGATCTACGT
CTGATTCCTTTGAGCCGAATGTATACAACCGCCCGCTTTCGACTCGCAAT
GTCTTGAGCAGCGTCGTATATGCTGTACTAATCCCGCATATCCGAGCAAA
GCTTGACAACTGGTATTCTGTTCAAACTGGAGGTGCTGCAGCCGTGATGC
TTCAAGAACTAAATGTTTCTCAACCGCAAGCAGAGGAAGCCGTTGTCCAC
ACTACCCCTCTGCCTGCACGATCACTTTTATCAGGTGGGCATACAAGTAT
CAGATCTATACTTAGGATTGCTCTTCTGCGCTTGCTCCGCTTTCCCACTG
TTTTGATTCGCCTCATAAAAGCATCTATTGGCTTCGCAAAGAGCGAAACA
TTCAAGCGACAGGTACTGATCTACTATCCAAAGATTCGCGCTGTTGTAGA
TGCAGTCAACTTGATATTTGGTATCTCCTATTTATACGGACATACGAAGT
ATTACAACTTGTCCTTCGCACTACAGGGCCTCATTTTGAGACGCGTAAGT
ACGATGGATCTTTTGCGGCTATCGGTTGTCCATTCTTCTGGTCGCTCAAC
GACACCTTTGCTTCATGCGATTGGCAATTTCTTTGAAAGGACGATGAGTT
TACTTCGAATAGCATTCTTTGCGAGCATATTTGGATTTCGCTTTCTGCAG
TACTATTACGCAGCTGAGGCTGCCGCGCCAAGAGATCTGGGTGTAGTTAT
TCCACCGCCCGCTCCACTTGAGCCAGCAACGGGTGTCAACCGTGAACTCG
CAACGGCACCAGGGAAATGTCCAATCTGTCATCAAGATCGAACGAATTCT
ACCGCATGCACGACTTCAGGATATGTTTTCTGCTACCTCTGCATCGTGTC
AAGCCTTCAGACAACACAGAAATGTCCCGTTACCTTAGCGCCTACTACAA
TAGACGACCTTGTTCGAGTCTATGAAAACGGCGGTAATACATAA

protein sequence of Ggra10550.t1

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MSNIPSARPSFFEVYAAEQLDGALRPAFRYVLEVVSIRNPSLLRLANWSD
ELFSFLLIILESFQLSTEAALLSESFYSLRRSTSDSFEPNVYNRPLSTRN
VLSSVVYAVLIPHIRAKLDNWYSVQTGGAAAVMLQELNVSQPQAEEAVVH
TTPLPARSLLSGGHTSIRSILRIALLRLLRFPTVLIRLIKASIGFAKSET
FKRQVLIYYPKIRAVVDAVNLIFGISYLYGHTKYYNLSFALQGLILRRVS
TMDLLRLSVVHSSGRSTTPLLHAIGNFFERTMSLLRIAFFASIFGFRFLQ
YYYAAEAAAPRDLGVVIPPPAPLEPATGVNRELATAPGKCPICHQDRTNS
TACTTSGYVFCYLCIVSSLQTTQKCPVTLAPTTIDDLVRVYENGGNT*

mRNA from alignment at tig00000904_pilon:165521..166891-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000904_pilon:165521..166891- (Gracilaria gracilis GNS1m male)
ATGAGCAATATTCCATCAGCTAGACCTTCATTCTTTGAGGTTTACGCAGC
TGAACAGCTCGATGGGGCGTTGAGACCAGCTTTCCGCTACGTTTTAGAAG
TGGTATCAATACGGAATCCTTCTCTCCTCCGACTGGCAAACTGGTCGGAT
GAATTGTTCTCGTTTCTTTTGATAATCCTGGAATCTTTTCAGTTAAGCAC
TGAGGCTGCTCTCTTATCTGAATCATTCTATTCTCTTCGAAGATCTACGT
CTGATTCCTTTGAGCCGAATGTATACAACCGCCCGCTTTCGACTCGCAAT
GTCTTGAGCAGCGTCGTATATGCTGTACTAATCCCGCATATCCGAGCAAA
GCTTGACAACTGGTATTCTGTTCAAACTGGAGGTGCTGCAGCCGTGATGC
TTCAAGAACTAAATGTTTCTCAACCGCAAGCAGAGGAAGCCGTTGTCCAC
ACTACCCCTCTGCCTGCACGATCACTTTTATCAGGTGGGCATACAAGTAT
CAGATCTATACTTAGGATTGCTCTTCTGCGCTTGCTCCGCTTTCCCACTG
TTTTGATTCGCCTCATAAAAGCATCTATTGGCTTCGCAAAGAGCGAAACA
TTCAAGCGACAGGTACTGATCTACTATCCAAAGATTCGCGCTGTTGTAGA
TGCAGTCAACTTGATATTTGGTATCTCCTATTTATACGGACATACGAAGT
ATTACAACTTGTCCTTCGCACTACAGGGCCTCATTTTGAGACGCGTAAGT
ACGATGGATCTTTTGCGGCTATCGGTTGTCCATTCTTCTGGTCGCTCAAC
GACACCTTTGCTTCATGCGATTGGCAATTTCTTTGAAAGGACGATGAGTT
TACTTCGAATAGCATTCTTTGCGAGCATATTTGGATTTCGCTTTCTGCAG
TACTATTACGCAGCTGAGGTACGGCCATGGTATAAGAGCAGTAGTGTTTT
ATTAAGGAAACTTTTGACTAACCACTCTTTTATCACGTCGTGCGTTCAAT
GTTAATCCACTAGGCTGCCGCGCCAAGAGATCTGGGTGTAGTTATTCCAC
CGCCCGCTCCACTTGAGCCAGCAACGGGTGTCAACCGTGAACTCGCAACG
GCACCAGGGAAATGTCCAATCTGTCATCAAGATCGAACGAATTCTACCGC
ATGCGTACGTTGAGCACTTTCACAAATACTACGGCCGACAAGCGAACAAA
CTTCTAACTTGAGACTCCCGCAATGCCGATCCGAAGACGACTTCAGGATA
TGTTTTCTGCTACCTCTGCATCGTGTCAAGCCTTCAGACAACACAGAAAT
GTCCCGTTACCTTAGCGCCTACTACAATAGACGACCTTGTTCGAGTCTAT
GAAAACGGCGGTAATACATAA

Coding sequence (CDS) from alignment at tig00000904_pilon:165521..166891-

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000904_pilon:165521..166891- (Gracilaria gracilis GNS1m male)
ATGAGCAATATTCCATCAGCTAGACCTTCATTCTTTGAGGTTTACGCAGC
TGAACAGCTCGATGGGGCGTTGAGACCAGCTTTCCGCTACGTTTTAGAAG
TGGTATCAATACGGAATCCTTCTCTCCTCCGACTGGCAAACTGGTCGGAT
GAATTGTTCTCGTTTCTTTTGATAATCCTGGAATCTTTTCAGTTAAGCAC
TGAGGCTGCTCTCTTATCTGAATCATTCTATTCTCTTCGAAGATCTACGT
CTGATTCCTTTGAGCCGAATGTATACAACCGCCCGCTTTCGACTCGCAAT
GTCTTGAGCAGCGTCGTATATGCTGTACTAATCCCGCATATCCGAGCAAA
GCTTGACAACTGGTATTCTGTTCAAACTGGAGGTGCTGCAGCCGTGATGC
TTCAAGAACTAAATGTTTCTCAACCGCAAGCAGAGGAAGCCGTTGTCCAC
ACTACCCCTCTGCCTGCACGATCACTTTTATCAGGTGGGCATACAAGTAT
CAGATCTATACTTAGGATTGCTCTTCTGCGCTTGCTCCGCTTTCCCACTG
TTTTGATTCGCCTCATAAAAGCATCTATTGGCTTCGCAAAGAGCGAAACA
TTCAAGCGACAGGTACTGATCTACTATCCAAAGATTCGCGCTGTTGTAGA
TGCAGTCAACTTGATATTTGGTATCTCCTATTTATACGGACATACGAAGT
ATTACAACTTGTCCTTCGCACTACAGGGCCTCATTTTGAGACGCGTAAGT
ACGATGGATCTTTTGCGGCTATCGGTTGTCCATTCTTCTGGTCGCTCAAC
GACACCTTTGCTTCATGCGATTGGCAATTTCTTTGAAAGGACGATGAGTT
TACTTCGAATAGCATTCTTTGCGAGCATATTTGGATTTCGCTTTCTGCAG
TACTATTACGCAGCTGAGGCTGCCGCGCCAAGAGATCTGGGTGTAGTTAT
TCCACCGCCCGCTCCACTTGAGCCAGCAACGGGTGTCAACCGTGAACTCG
CAACGGCACCAGGGAAATGTCCAATCTGTCATCAAGATCGAACGAATTCT
ACCGCATGCACGACTTCAGGATATGTTTTCTGCTACCTCTGCATCGTGTC
AAGCCTTCAGACAACACAGAAATGTCCCGTTACCTTAGCGCCTACTACAA
TAGACGACCTTGTTCGAGTCTATGAAAACGGCGGTAATACATAA