Ggra10548.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10548.t1
Unique NameGgra10548.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length387
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:161322..162482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391625.PPSIR1_14590
PFAMsLactamase_B
Max annot lvl2|Bacteria
Evalue1.46e-32
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria
DescriptionThiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10548Ggra10548Gracilaria gracilis GNS1m malegenetig00000904_pilon 161322..162482 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10548.t1.stop1Ggra10548.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 161322..161324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10548.t1.CDS1Ggra10548.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 161322..162482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10548.t1.exon1Ggra10548.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 161322..162482 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10548.t1.start1Ggra10548.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 162480..162482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10548.t1Ggra10548.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 161322..162482 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10548.t1 ID=Ggra10548.t1|Name=Ggra10548.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp
MVLVSSSVSKLLQLVLLILSLHIISTTASNATISPSNCPGLDTCLQNIDN
GGLCGPLPVPPQARLPSIPPGTFILQKLRPGVWAYDDTSYNSLMLYRAGH
LVLADFPDSGNSNTPNGTGTIITDAILEILDGKKPRLIDMVYSHDHFDHI
GAAKRVYDFLKDEFPNAFIRVWGTFVAKRTIRRSDTNRAVLPTVIVGRYP
RTIYMGDGLRVKLLPIGGHSGRDLAVYVPPSRGQQGVVLYVDVIFPKWAP
FLNFAITEDLTEYVRAHQLLLKLKFGTLIGGHVLLGTKEDVRTNMEFTKD
VIDAARKSVQMSSPEDFQRAGLAQFFNPDAVEFGNFWFITIDVVRRVQIN
MCARMVLEKWACRLGGLGVVIQSHCFTAVTFIVVAD*
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spliced messenger RNA

>Ggra10548.t1 ID=Ggra10548.t1|Name=Ggra10548.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000904_pilon:161322..162482- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTGTTTCGTCGTCTGTCTCAAAGCTCTTGCAGCTTGTCCTCCT
CATTCTTTCCTTGCATATTATTTCTACCACCGCGTCGAACGCCACAATCT
CCCCTTCCAATTGCCCTGGTTTAGACACCTGTCTGCAAAATATTGACAAC
GGGGGGCTATGTGGGCCTTTACCGGTACCGCCGCAGGCTCGTCTACCGTC
CATCCCGCCTGGCACCTTCATTCTCCAAAAGCTTCGTCCTGGTGTTTGGG
CATATGACGATACATCGTATAACTCCCTTATGCTGTATCGCGCAGGTCAT
CTTGTTCTTGCAGATTTCCCAGACTCCGGTAACTCAAATACTCCGAATGG
AACTGGCACAATAATTACGGATGCCATACTGGAGATCCTTGATGGCAAGA
AACCACGTCTGATAGACATGGTATACTCTCACGACCATTTCGATCATATC
GGTGCTGCTAAGAGGGTCTACGACTTTTTGAAGGATGAATTCCCCAATGC
TTTCATTAGGGTATGGGGTACCTTCGTCGCCAAGCGTACAATCAGGCGAT
CAGACACTAATCGAGCGGTGTTGCCCACGGTGATTGTCGGACGGTATCCT
CGTACTATCTATATGGGTGATGGGTTGCGAGTGAAACTTCTCCCCATCGG
TGGGCACTCTGGCCGAGACTTGGCTGTATACGTTCCACCCTCACGCGGGC
AACAAGGGGTCGTGTTGTATGTCGACGTTATCTTTCCCAAGTGGGCCCCG
TTCCTCAATTTTGCGATTACAGAGGATTTAACTGAATACGTGCGCGCTCA
CCAGTTGTTGCTGAAGCTCAAATTCGGAACGCTCATTGGCGGACATGTAT
TGCTTGGAACGAAAGAAGATGTGCGAACAAACATGGAGTTTACGAAGGAT
GTCATCGATGCTGCTCGAAAGAGTGTGCAGATGAGCTCCCCAGAAGACTT
CCAAAGGGCGGGACTGGCCCAGTTCTTCAATCCTGATGCTGTCGAGTTTG
GAAACTTTTGGTTCATTACTATTGACGTGGTGCGGAGGGTTCAGATTAAC
ATGTGTGCACGTATGGTATTGGAGAAATGGGCTTGTCGACTTGGTGGACT
TGGTGTTGTAATTCAGAGTCATTGCTTCACTGCCGTGACTTTTATTGTAG
TCGCAGATTAA
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protein sequence of Ggra10548.t1

>Ggra10548.t1 ID=Ggra10548.t1|Name=Ggra10548.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=387bp
MVLVSSSVSKLLQLVLLILSLHIISTTASNATISPSNCPGLDTCLQNIDN
GGLCGPLPVPPQARLPSIPPGTFILQKLRPGVWAYDDTSYNSLMLYRAGH
LVLADFPDSGNSNTPNGTGTIITDAILEILDGKKPRLIDMVYSHDHFDHI
GAAKRVYDFLKDEFPNAFIRVWGTFVAKRTIRRSDTNRAVLPTVIVGRYP
RTIYMGDGLRVKLLPIGGHSGRDLAVYVPPSRGQQGVVLYVDVIFPKWAP
FLNFAITEDLTEYVRAHQLLLKLKFGTLIGGHVLLGTKEDVRTNMEFTKD
VIDAARKSVQMSSPEDFQRAGLAQFFNPDAVEFGNFWFITIDVVRRVQIN
MCARMVLEKWACRLGGLGVVIQSHCFTAVTFIVVAD*
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mRNA from alignment at tig00000904_pilon:161322..162482-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10548.t1 ID=Ggra10548.t1|Name=Ggra10548.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000904_pilon:161322..162482- (Gracilaria gracilis GNS1m male)
ATGGTGCTTGTTTCGTCGTCTGTCTCAAAGCTCTTGCAGCTTGTCCTCCT
CATTCTTTCCTTGCATATTATTTCTACCACCGCGTCGAACGCCACAATCT
CCCCTTCCAATTGCCCTGGTTTAGACACCTGTCTGCAAAATATTGACAAC
GGGGGGCTATGTGGGCCTTTACCGGTACCGCCGCAGGCTCGTCTACCGTC
CATCCCGCCTGGCACCTTCATTCTCCAAAAGCTTCGTCCTGGTGTTTGGG
CATATGACGATACATCGTATAACTCCCTTATGCTGTATCGCGCAGGTCAT
CTTGTTCTTGCAGATTTCCCAGACTCCGGTAACTCAAATACTCCGAATGG
AACTGGCACAATAATTACGGATGCCATACTGGAGATCCTTGATGGCAAGA
AACCACGTCTGATAGACATGGTATACTCTCACGACCATTTCGATCATATC
GGTGCTGCTAAGAGGGTCTACGACTTTTTGAAGGATGAATTCCCCAATGC
TTTCATTAGGGTATGGGGTACCTTCGTCGCCAAGCGTACAATCAGGCGAT
CAGACACTAATCGAGCGGTGTTGCCCACGGTGATTGTCGGACGGTATCCT
CGTACTATCTATATGGGTGATGGGTTGCGAGTGAAACTTCTCCCCATCGG
TGGGCACTCTGGCCGAGACTTGGCTGTATACGTTCCACCCTCACGCGGGC
AACAAGGGGTCGTGTTGTATGTCGACGTTATCTTTCCCAAGTGGGCCCCG
TTCCTCAATTTTGCGATTACAGAGGATTTAACTGAATACGTGCGCGCTCA
CCAGTTGTTGCTGAAGCTCAAATTCGGAACGCTCATTGGCGGACATGTAT
TGCTTGGAACGAAAGAAGATGTGCGAACAAACATGGAGTTTACGAAGGAT
GTCATCGATGCTGCTCGAAAGAGTGTGCAGATGAGCTCCCCAGAAGACTT
CCAAAGGGCGGGACTGGCCCAGTTCTTCAATCCTGATGCTGTCGAGTTTG
GAAACTTTTGGTTCATTACTATTGACGTGGTGCGGAGGGTTCAGATTAAC
ATGTGTGCACGTATGGTATTGGAGAAATGGGCTTGTCGACTTGGTGGACT
TGGTGTTGTAATTCAGAGTCATTGCTTCACTGCCGTGACTTTTATTGTAG
TCGCAGATTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:161322..162482-

>Ggra10548.t1 ID=Ggra10548.t1|Name=Ggra10548.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00000904_pilon:161322..162482- (Gracilaria gracilis GNS1m male)
ATGGTGCTTGTTTCGTCGTCTGTCTCAAAGCTCTTGCAGCTTGTCCTCCT
CATTCTTTCCTTGCATATTATTTCTACCACCGCGTCGAACGCCACAATCT
CCCCTTCCAATTGCCCTGGTTTAGACACCTGTCTGCAAAATATTGACAAC
GGGGGGCTATGTGGGCCTTTACCGGTACCGCCGCAGGCTCGTCTACCGTC
CATCCCGCCTGGCACCTTCATTCTCCAAAAGCTTCGTCCTGGTGTTTGGG
CATATGACGATACATCGTATAACTCCCTTATGCTGTATCGCGCAGGTCAT
CTTGTTCTTGCAGATTTCCCAGACTCCGGTAACTCAAATACTCCGAATGG
AACTGGCACAATAATTACGGATGCCATACTGGAGATCCTTGATGGCAAGA
AACCACGTCTGATAGACATGGTATACTCTCACGACCATTTCGATCATATC
GGTGCTGCTAAGAGGGTCTACGACTTTTTGAAGGATGAATTCCCCAATGC
TTTCATTAGGGTATGGGGTACCTTCGTCGCCAAGCGTACAATCAGGCGAT
CAGACACTAATCGAGCGGTGTTGCCCACGGTGATTGTCGGACGGTATCCT
CGTACTATCTATATGGGTGATGGGTTGCGAGTGAAACTTCTCCCCATCGG
TGGGCACTCTGGCCGAGACTTGGCTGTATACGTTCCACCCTCACGCGGGC
AACAAGGGGTCGTGTTGTATGTCGACGTTATCTTTCCCAAGTGGGCCCCG
TTCCTCAATTTTGCGATTACAGAGGATTTAACTGAATACGTGCGCGCTCA
CCAGTTGTTGCTGAAGCTCAAATTCGGAACGCTCATTGGCGGACATGTAT
TGCTTGGAACGAAAGAAGATGTGCGAACAAACATGGAGTTTACGAAGGAT
GTCATCGATGCTGCTCGAAAGAGTGTGCAGATGAGCTCCCCAGAAGACTT
CCAAAGGGCGGGACTGGCCCAGTTCTTCAATCCTGATGCTGTCGAGTTTG
GAAACTTTTGGTTCATTACTATTGACGTGGTGCGGAGGGTTCAGATTAAC
ATGTGTGCACGTATGGTATTGGAGAAATGGGCTTGTCGACTTGGTGGACT
TGGTGTTGTAATTCAGAGTCATTGCTTCACTGCCGTGACTTTTATTGTAG
TCGCAGATTAA
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