Ggra10542.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10542.t1
Unique NameGgra10542.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:63426..63946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10542Ggra10542Gracilaria gracilis GNS1m malegenetig00000904_pilon 63426..63946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10542.t1Ggra10542.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 63426..63946 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10542.t1.start1Ggra10542.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 63426..63428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10542.t1.CDS1Ggra10542.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 63426..63574 +
Ggra10542.t1.CDS2Ggra10542.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 63659..63732 +
Ggra10542.t1.CDS3Ggra10542.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000904_pilon 63858..63946 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10542.t1.exon1Ggra10542.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 63426..63574 +
Ggra10542.t1.exon2Ggra10542.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 63659..63732 +
Ggra10542.t1.exon3Ggra10542.t1.exon3Gracilaria gracilis GNS1m maleexontig00000904_pilon 63858..63946 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10542.t1.intron1Ggra10542.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 63575..63658 +
Ggra10542.t1.intron2Ggra10542.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000904_pilon 63733..63857 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10542.t1.stop1Ggra10542.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 63944..63946 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10542.t1 ID=Ggra10542.t1|Name=Ggra10542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MVGGSTSSAATAAGFYAAAAASETDGDTFDGDAEFDEYDDWDYAEMLSTM
SKNLKTYVLQPLVVGAAAAFGMSVGFAIFDATTSIFIRRSPKVNSQPPLH
KAN*
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spliced messenger RNA

>Ggra10542.t1 ID=Ggra10542.t1|Name=Ggra10542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000904_pilon:63426..63946+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggtcggcggtagcacatcatctgccgcaactgctgctgggttctatgc
tgcagccgctgctagtgagaccgatggagacACTTTTGATGGAGATGCGG
AATTTGACGAGTACGATGACTGGGACTACGCTGAAATGTTGTCCACAATG
TCAAAGAACTTGAAGACATATGTTCTGCAACCTCTTGTGGTCGGTGCAGC
GGCAGCGTTTGGGATGTCAGTCGGGTTTGCCATTTTCGATGCGACAACGT
CTATCTTTATAAGGAGGTCACCAAAGGTGAACTCTCAGCCACCACTCCAC
AAAGCCAATTGA
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protein sequence of Ggra10542.t1

>Ggra10542.t1 ID=Ggra10542.t1|Name=Ggra10542.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MVGGSTSSAATAAGFYAAAAASETDGDTFDGDAEFDEYDDWDYAEMLSTM
SKNLKTYVLQPLVVGAAAAFGMSVGFAIFDATTSIFIRRSPKVNSQPPLH
KAN*
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mRNA from alignment at tig00000904_pilon:63426..63946+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10542.t1 ID=Ggra10542.t1|Name=Ggra10542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp|location=Sequence derived from alignment at tig00000904_pilon:63426..63946+ (Gracilaria gracilis GNS1m male)
atggtcggcggtagcacatcatctgccgcaactgctgctgggttctatgc
tgcagccgctgctagtgagaccgatggagacACTTTTGATGGAGATGCGG
AATTTGACGAGTACGATGACTGGGACTACGCTGAAATGTTGTCCACAATG
TAAGTTATTGGTTGAGTGGCGATCGCATGTATCAACAGAAACGAAACCTC
ATTGAACCTCTAACAAGATTCCGTCTATTATAGGTCAAAGAACTTGAAGA
CATATGTTCTGCAACCTCTTGTGGTCGGTGCAGCGGCAGCGTTTGGGATG
TCAGTCGGTATGTGACAAAGTAAATCTCGTGACGTTATGCCTACCCATAT
ATACACTGCATAACGTGCGATCTACATCCGGAGCATCAGTACTAACTTCG
AACTGTGATCAACTACAATCTCTGCGAAAAAGGGTTTGCCATTTTCGATG
CGACAACGTCTATCTTTATAAGGAGGTCACCAAAGGTGAACTCTCAGCCA
CCACTCCACAAAGCCAATTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:63426..63946+

>Ggra10542.t1 ID=Ggra10542.t1|Name=Ggra10542.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000904_pilon:63426..63946+ (Gracilaria gracilis GNS1m male)
atggtcggcggtagcacatcatctgccgcaactgctgctgggttctatgc
tgcagccgctgctagtgagaccgatggagacACTTTTGATGGAGATGCGG
AATTTGACGAGTACGATGACTGGGACTACGCTGAAATGTTGTCCACAATG
TCAAAGAACTTGAAGACATATGTTCTGCAACCTCTTGTGGTCGGTGCAGC
GGCAGCGTTTGGGATGTCAGTCGGGTTTGCCATTTTCGATGCGACAACGT
CTATCTTTATAAGGAGGTCACCAAAGGTGAACTCTCAGCCACCACTCCAC
AAAGCCAATTGA
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