Ggra10540.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10540.t1
Unique NameGgra10540.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length624
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:58298..60215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704842.1
PFAMsCobW_C,cobW
Max annot lvl2759|Eukaryota
Evalue1.37e-51
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota
DescriptionATP binding
COG categoryF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10540Ggra10540Gracilaria gracilis GNS1m malegenetig00000904_pilon 58298..61819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10540.t1Ggra10540.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 58298..60215 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10540.t1.start1Ggra10540.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 58298..58300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10540.t1.CDS1Ggra10540.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 58298..60160 +
Ggra10540.t1.CDS2Ggra10540.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 60207..60215 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10540.t1.exon1Ggra10540.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 58298..60160 +
Ggra10540.t1.exon2Ggra10540.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 60207..60215 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10540.t1.intron1Ggra10540.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 60161..60206 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10540.t1.stop1Ggra10540.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 60213..60215 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10540.t1 ID=Ggra10540.t1|Name=Ggra10540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp
MDCASHQHQAFIPPSPSLCSFRKGFLLCRPPHRQHHTFRKTPLRSRLRAL
SRLGLPSIRIVALQTSPVSGDNDGELHEEQKAPQKSYSVGVTIVSGYDAS
LRRSVIEQIAAEYEAGRLVVVTSGGMASTEESDTLAQEGAVATQFESKPL
TADGVSHSSVASDEPLSSKAGDHELDGSPENDSDEYIYDMNPTTKPEGWI
SCSSTDEMAEVIAKLATSRECDYIVAEGSTNTNMEPQDFARLFQNRGGTS
LRVDTLVSVVDGHMLLKDLSALPISQQDDILGDEGSQSKDMSRLPSTDSP
ESIRDIADTRPMGVVSLVENANVVVVKQAMNSPGLEDISRARELVYVLNG
AADIISATDEQLPIDKLVNTNTYDHESVLFGATWKRVLLASRNTLNGSTR
PTLPKSLKEATFVYRARRPFHPTRLYEHIKAVATFTGVVRSTGRIWLATR
MLAPLEWNQAGVSATLRVGNLFWAAVAEEDWPTDDSQRERIMENWDTQYG
DRETEIVFVGKGIDKLRLQGLLDGCLLQDEEMVFNNMWENFDDPFVEWVP
LIEDDEEISTDNEELLTESALQEESSIAGLVDRPTNEDVKVREEGNSAFL
DVTETGVKVVAEKDEGLNENEET*
back to top

spliced messenger RNA

>Ggra10540.t1 ID=Ggra10540.t1|Name=Ggra10540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000904_pilon:58298..60215+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTGCGCTTCACACCAGCATCAAGCTTTTATCCCCCCAAGTCCATC
TCTGTGCTCGTTCAGAAAGGGATTCTTGTTGTGTAGACCTCCACATCGCC
AGCATCACACATTTCGAAAAACACCGCTTAGATCTCGTTTGCGCGCGTTG
TCCAGACTAGGTCTACCATCCATAAGAATAGTGGCGTTGCAGACAAGTCC
TGTTTCTGGTGACAACGATGGAGAGTTACATGAAGAACAAAAAGCCCCTC
AGAAGAGCTATTCAGTTGGCGTCACGATTGTTTCAGGATATGATGCATCT
CTTCGCCGCAGTGTAATCGAACAAATTGCCGCAGAATATGAAGCAGGACG
GCTTGTTGTTGTCACATCTGGGGGCATGGCGTCTACAGAAGAATCAGATA
CACTCGCACAAGAGGGGGCTGTAGCAACCCAATTTGAGTCAAAACCACTT
ACTGCAGATGGGGTCTCACACTCGAGCGTCGCGAGCGATGAACCGTTGAG
TTCAAAAGCAGGTGATCATGAATTGGACGGTTCTCCTGAGAACGACTCCG
ATGAGTATATATATGATATGAACCCTACAACCAAACCCGAAGGTTGGATA
TCATGTTCATCGACGGATGAAATGGCTGAAGTCATAGCAAAGCTTGCGAC
AAGTAGAGAATGTGATTACATCGTTGCAGAGGGCTCTACGAATACAAATA
TGGAACCACAAGACTTTGCTCGTCTTTTTCAAAACCGAGGAGGGACTTCG
CTTCGAGTGGATACACTAGTCTCCGTTGTAGATGGGCATATGTTGCTAAA
AGATCTGTCCGCGCTCCCCATATCACAACAGGACGATATTCTGGGCGACG
AGGGTTCGCAATCTAAGGATATGTCTCGTCTACCAAGCACCGACTCCCCT
GAAAGTATACGGGACATAGCTGACACAAGACCCATGGGTGTTGTAAGTCT
TGTCGAGAATGCAAATGTCGTTGTTGTGAAACAAGCTATGAACTCACCCG
GATTGGAAGACATATCCAGAGCAAGAGAACTCGTATATGTCTTGAATGGG
GCAGCAGATATTATATCAGCTACAGACGAACAACTACCGATTGATAAACT
GGTCAACACCAACACATACGATCATGAAAGCGTTTTGTTTGGCGCAACCT
GGAAGAGAGTTCTCTTAGCATCTCGGAATACTTTGAATGGTTCTACAAGG
CCTACTTTGCCAAAGTCATTGAAAGAAGCCACTTTTGTTTATAGGGCTCG
GAGGCCGTTTCACCCAACACGCCTTTACGAGCATATTAAAGCGGTGGCAA
CTTTCACAGGCGTAGTTCGCAGCACCGGTCGCATCTGGCTTGCGACCAGA
ATGCTCGCACCATTAGAATGGAATCAAGCCGGTGTATCTGCCACCCTTCG
GGTCGGGAACCTTTTCTGGGCGGCTGTCGCCGAAGAGGATTGGCCCACTG
ATGATTCCCAACGCGAGCGAATTATGGAGAATTGGGATACACAGTATGGG
GACAGAGAGACTGAGATAGTGTTCGTTGGGAAGGGAATAGATAAACTTCG
ACTACAAGGGTTATTAGATGGGTGTTTACTACAGGATGAGGAAATGGTGT
TTAACAACATGTGGGAGAATTTCGATGATCCTTTCGTAGAGTGGGTACCT
CTCATTGAGGACGATGAAGAAATATCTACGGACAACGAAGAATTACTGAC
GGAGTCTGCACTTCAAGAAGAATCAAGTATAGCAGGTTTAGTGGATCGAC
CCACAAATGAGGATGTTAAAGTTCGAGAAGAAGGCAATTCAGCGTTTCTT
GATGTCACGGAAACGGGTGTGAAAGTCGTCGCGGAAAAAGATGAGGGCTT
AAATGAAAATGAAGAAACCTAA
back to top

protein sequence of Ggra10540.t1

>Ggra10540.t1 ID=Ggra10540.t1|Name=Ggra10540.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MDCASHQHQAFIPPSPSLCSFRKGFLLCRPPHRQHHTFRKTPLRSRLRAL
SRLGLPSIRIVALQTSPVSGDNDGELHEEQKAPQKSYSVGVTIVSGYDAS
LRRSVIEQIAAEYEAGRLVVVTSGGMASTEESDTLAQEGAVATQFESKPL
TADGVSHSSVASDEPLSSKAGDHELDGSPENDSDEYIYDMNPTTKPEGWI
SCSSTDEMAEVIAKLATSRECDYIVAEGSTNTNMEPQDFARLFQNRGGTS
LRVDTLVSVVDGHMLLKDLSALPISQQDDILGDEGSQSKDMSRLPSTDSP
ESIRDIADTRPMGVVSLVENANVVVVKQAMNSPGLEDISRARELVYVLNG
AADIISATDEQLPIDKLVNTNTYDHESVLFGATWKRVLLASRNTLNGSTR
PTLPKSLKEATFVYRARRPFHPTRLYEHIKAVATFTGVVRSTGRIWLATR
MLAPLEWNQAGVSATLRVGNLFWAAVAEEDWPTDDSQRERIMENWDTQYG
DRETEIVFVGKGIDKLRLQGLLDGCLLQDEEMVFNNMWENFDDPFVEWVP
LIEDDEEISTDNEELLTESALQEESSIAGLVDRPTNEDVKVREEGNSAFL
DVTETGVKVVAEKDEGLNENEET*
back to top

mRNA from alignment at tig00000904_pilon:58298..60215+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10540.t1 ID=Ggra10540.t1|Name=Ggra10540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1918bp|location=Sequence derived from alignment at tig00000904_pilon:58298..60215+ (Gracilaria gracilis GNS1m male)
ATGGACTGCGCTTCACACCAGCATCAAGCTTTTATCCCCCCAAGTCCATC
TCTGTGCTCGTTCAGAAAGGGATTCTTGTTGTGTAGACCTCCACATCGCC
AGCATCACACATTTCGAAAAACACCGCTTAGATCTCGTTTGCGCGCGTTG
TCCAGACTAGGTCTACCATCCATAAGAATAGTGGCGTTGCAGACAAGTCC
TGTTTCTGGTGACAACGATGGAGAGTTACATGAAGAACAAAAAGCCCCTC
AGAAGAGCTATTCAGTTGGCGTCACGATTGTTTCAGGATATGATGCATCT
CTTCGCCGCAGTGTAATCGAACAAATTGCCGCAGAATATGAAGCAGGACG
GCTTGTTGTTGTCACATCTGGGGGCATGGCGTCTACAGAAGAATCAGATA
CACTCGCACAAGAGGGGGCTGTAGCAACCCAATTTGAGTCAAAACCACTT
ACTGCAGATGGGGTCTCACACTCGAGCGTCGCGAGCGATGAACCGTTGAG
TTCAAAAGCAGGTGATCATGAATTGGACGGTTCTCCTGAGAACGACTCCG
ATGAGTATATATATGATATGAACCCTACAACCAAACCCGAAGGTTGGATA
TCATGTTCATCGACGGATGAAATGGCTGAAGTCATAGCAAAGCTTGCGAC
AAGTAGAGAATGTGATTACATCGTTGCAGAGGGCTCTACGAATACAAATA
TGGAACCACAAGACTTTGCTCGTCTTTTTCAAAACCGAGGAGGGACTTCG
CTTCGAGTGGATACACTAGTCTCCGTTGTAGATGGGCATATGTTGCTAAA
AGATCTGTCCGCGCTCCCCATATCACAACAGGACGATATTCTGGGCGACG
AGGGTTCGCAATCTAAGGATATGTCTCGTCTACCAAGCACCGACTCCCCT
GAAAGTATACGGGACATAGCTGACACAAGACCCATGGGTGTTGTAAGTCT
TGTCGAGAATGCAAATGTCGTTGTTGTGAAACAAGCTATGAACTCACCCG
GATTGGAAGACATATCCAGAGCAAGAGAACTCGTATATGTCTTGAATGGG
GCAGCAGATATTATATCAGCTACAGACGAACAACTACCGATTGATAAACT
GGTCAACACCAACACATACGATCATGAAAGCGTTTTGTTTGGCGCAACCT
GGAAGAGAGTTCTCTTAGCATCTCGGAATACTTTGAATGGTTCTACAAGG
CCTACTTTGCCAAAGTCATTGAAAGAAGCCACTTTTGTTTATAGGGCTCG
GAGGCCGTTTCACCCAACACGCCTTTACGAGCATATTAAAGCGGTGGCAA
CTTTCACAGGCGTAGTTCGCAGCACCGGTCGCATCTGGCTTGCGACCAGA
ATGCTCGCACCATTAGAATGGAATCAAGCCGGTGTATCTGCCACCCTTCG
GGTCGGGAACCTTTTCTGGGCGGCTGTCGCCGAAGAGGATTGGCCCACTG
ATGATTCCCAACGCGAGCGAATTATGGAGAATTGGGATACACAGTATGGG
GACAGAGAGACTGAGATAGTGTTCGTTGGGAAGGGAATAGATAAACTTCG
ACTACAAGGGTTATTAGATGGGTGTTTACTACAGGATGAGGAAATGGTGT
TTAACAACATGTGGGAGAATTTCGATGATCCTTTCGTAGAGTGGGTACCT
CTCATTGAGGACGATGAAGAAATATCTACGGACAACGAAGAATTACTGAC
GGAGTCTGCACTTCAAGAAGAATCAAGTATAGCAGGTTTAGTGGATCGAC
CCACAAATGAGGATGTTAAAGTTCGAGAAGAAGGCAATTCAGCGTTTCTT
GATGTCACGGAAACGGGTGTGAAAGTCGTCGCGGAAAAAGATGAGGGCTT
AAATGAAAATGAAGTTGGCGCAGCACTGGATGACACTTCATCAGCAACAA
ATGAAGTAGGAAACCTAA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:58298..60215+

>Ggra10540.t1 ID=Ggra10540.t1|Name=Ggra10540.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00000904_pilon:58298..60215+ (Gracilaria gracilis GNS1m male)
ATGGACTGCGCTTCACACCAGCATCAAGCTTTTATCCCCCCAAGTCCATC
TCTGTGCTCGTTCAGAAAGGGATTCTTGTTGTGTAGACCTCCACATCGCC
AGCATCACACATTTCGAAAAACACCGCTTAGATCTCGTTTGCGCGCGTTG
TCCAGACTAGGTCTACCATCCATAAGAATAGTGGCGTTGCAGACAAGTCC
TGTTTCTGGTGACAACGATGGAGAGTTACATGAAGAACAAAAAGCCCCTC
AGAAGAGCTATTCAGTTGGCGTCACGATTGTTTCAGGATATGATGCATCT
CTTCGCCGCAGTGTAATCGAACAAATTGCCGCAGAATATGAAGCAGGACG
GCTTGTTGTTGTCACATCTGGGGGCATGGCGTCTACAGAAGAATCAGATA
CACTCGCACAAGAGGGGGCTGTAGCAACCCAATTTGAGTCAAAACCACTT
ACTGCAGATGGGGTCTCACACTCGAGCGTCGCGAGCGATGAACCGTTGAG
TTCAAAAGCAGGTGATCATGAATTGGACGGTTCTCCTGAGAACGACTCCG
ATGAGTATATATATGATATGAACCCTACAACCAAACCCGAAGGTTGGATA
TCATGTTCATCGACGGATGAAATGGCTGAAGTCATAGCAAAGCTTGCGAC
AAGTAGAGAATGTGATTACATCGTTGCAGAGGGCTCTACGAATACAAATA
TGGAACCACAAGACTTTGCTCGTCTTTTTCAAAACCGAGGAGGGACTTCG
CTTCGAGTGGATACACTAGTCTCCGTTGTAGATGGGCATATGTTGCTAAA
AGATCTGTCCGCGCTCCCCATATCACAACAGGACGATATTCTGGGCGACG
AGGGTTCGCAATCTAAGGATATGTCTCGTCTACCAAGCACCGACTCCCCT
GAAAGTATACGGGACATAGCTGACACAAGACCCATGGGTGTTGTAAGTCT
TGTCGAGAATGCAAATGTCGTTGTTGTGAAACAAGCTATGAACTCACCCG
GATTGGAAGACATATCCAGAGCAAGAGAACTCGTATATGTCTTGAATGGG
GCAGCAGATATTATATCAGCTACAGACGAACAACTACCGATTGATAAACT
GGTCAACACCAACACATACGATCATGAAAGCGTTTTGTTTGGCGCAACCT
GGAAGAGAGTTCTCTTAGCATCTCGGAATACTTTGAATGGTTCTACAAGG
CCTACTTTGCCAAAGTCATTGAAAGAAGCCACTTTTGTTTATAGGGCTCG
GAGGCCGTTTCACCCAACACGCCTTTACGAGCATATTAAAGCGGTGGCAA
CTTTCACAGGCGTAGTTCGCAGCACCGGTCGCATCTGGCTTGCGACCAGA
ATGCTCGCACCATTAGAATGGAATCAAGCCGGTGTATCTGCCACCCTTCG
GGTCGGGAACCTTTTCTGGGCGGCTGTCGCCGAAGAGGATTGGCCCACTG
ATGATTCCCAACGCGAGCGAATTATGGAGAATTGGGATACACAGTATGGG
GACAGAGAGACTGAGATAGTGTTCGTTGGGAAGGGAATAGATAAACTTCG
ACTACAAGGGTTATTAGATGGGTGTTTACTACAGGATGAGGAAATGGTGT
TTAACAACATGTGGGAGAATTTCGATGATCCTTTCGTAGAGTGGGTACCT
CTCATTGAGGACGATGAAGAAATATCTACGGACAACGAAGAATTACTGAC
GGAGTCTGCACTTCAAGAAGAATCAAGTATAGCAGGTTTAGTGGATCGAC
CCACAAATGAGGATGTTAAAGTTCGAGAAGAAGGCAATTCAGCGTTTCTT
GATGTCACGGAAACGGGTGTGAAAGTCGTCGCGGAAAAAGATGAGGGCTT
AAATGAAAATGAAGAAACCTAA
back to top