Ggra10537.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10537.t1
Unique NameGgra10537.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:52933..53694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8496.XP_006270720.1
Preferred nameASPSCR1
PFAMsTUG-UBL1,UBX
Max annot lvl33208|Metazoa
KEGG koko:K15627
KEGG Pathwayko05202,map05202
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009893,GO:0009898,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0019222,GO:0019898,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032879,GO:0033036,GO:0033500,GO:0034613,GO:0034762,GO:0042592,GO:0042593,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562
Evalue2.62e-22
EggNOG OGsKOG2699@1|root,KOG2699@2759|Eukaryota,39SDW@33154|Opisthokonta,3BGEK@33208|Metazoa,3CYNI@33213|Bilateria,484AR@7711|Chordata,495SN@7742|Vertebrata
Descriptionregulation of glucose import
COG categoryO
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10537Ggra10537Gracilaria gracilis GNS1m malegenetig00000904_pilon 52933..53694 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10537.t1.stop1Ggra10537.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 52933..52935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10537.t1.CDS1Ggra10537.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 52933..53694 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10537.t1.exon1Ggra10537.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 52933..53694 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10537.t1.start1Ggra10537.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 53692..53694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10537.t1Ggra10537.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 52933..53694 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10537.t1 ID=Ggra10537.t1|Name=Ggra10537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=254bp
MDNSTSEPRAALDNEPESKQPEELEQPKKLSPEEVAQGVLDQRQVRVFRP
SNVRFDPRKLDVPDDFFEPTTGELKNIVHQNAATIAQMQDKPLLTKKLRD
AEKHQRMNRFRRAIIRILFPDRIAIQGTFLPSSTIREVIRFVRAALLDAR
NVKFHLFVVPPKKKLLDAKKTLWDEQLVPAAVLHIGIEEGPTESSQLLKQ
HLLERIEDTPESIAARVAAVTSPTRTLSHPSSSEKKSPKQKGGKKIPKWF
TKK*
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spliced messenger RNA

>Ggra10537.t1 ID=Ggra10537.t1|Name=Ggra10537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000904_pilon:52933..53694- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACTCTACTAGTGAACCAAGGGCTGCATTGGACAATGAGCCGGA
ATCGAAGCAACCTGAAGAGCTAGAACAACCGAAGAAGCTCTCCCCAGAAG
AAGTAGCTCAGGGCGTTCTTGACCAACGCCAAGTTCGTGTCTTTCGTCCA
TCAAACGTCCGCTTTGATCCTAGGAAACTGGACGTTCCTGATGACTTCTT
CGAACCCACAACAGGTGAACTTAAGAACATCGTCCATCAAAATGCTGCTA
CTATTGCCCAAATGCAAGACAAGCCATTACTGACCAAGAAGCTACGAGAC
GCCGAAAAACACCAGCGTATGAATCGCTTTCGTCGCGCTATTATACGTAT
TCTTTTCCCTGATCGCATTGCCATTCAAGGTACTTTCTTGCCATCAAGCA
CTATTCGCGAGGTTATTCGCTTTGTAAGAGCCGCCCTTTTGGATGCCCGA
AACGTCAAGTTCCATTTATTTGTTGTTCCGCCGAAGAAAAAATTGCTAGA
CGCAAAGAAAACCTTGTGGGACGAGCAACTGGTTCCCGCTGCCGTACTGC
ATATCGGAATAGAGGAAGGCCCAACAGAATCTAGCCAGTTACTTAAACAG
CATTTACTAGAGAGAATCGAAGACACTCCCGAAAGCATAGCGGCAAGGGT
TGCAGCAGTTACCTCACCTACAAGAACTCTTTCACACCCCAGCAGTTCAG
AAAAGAAATCTCCAAAACAGAAAGGAGGAAAGAAGATCCCCAAATGGTTC
ACGAAAAAGTAA
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protein sequence of Ggra10537.t1

>Ggra10537.t1 ID=Ggra10537.t1|Name=Ggra10537.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=254bp
MDNSTSEPRAALDNEPESKQPEELEQPKKLSPEEVAQGVLDQRQVRVFRP
SNVRFDPRKLDVPDDFFEPTTGELKNIVHQNAATIAQMQDKPLLTKKLRD
AEKHQRMNRFRRAIIRILFPDRIAIQGTFLPSSTIREVIRFVRAALLDAR
NVKFHLFVVPPKKKLLDAKKTLWDEQLVPAAVLHIGIEEGPTESSQLLKQ
HLLERIEDTPESIAARVAAVTSPTRTLSHPSSSEKKSPKQKGGKKIPKWF
TKK*
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mRNA from alignment at tig00000904_pilon:52933..53694-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10537.t1 ID=Ggra10537.t1|Name=Ggra10537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000904_pilon:52933..53694- (Gracilaria gracilis GNS1m male)
ATGGACAACTCTACTAGTGAACCAAGGGCTGCATTGGACAATGAGCCGGA
ATCGAAGCAACCTGAAGAGCTAGAACAACCGAAGAAGCTCTCCCCAGAAG
AAGTAGCTCAGGGCGTTCTTGACCAACGCCAAGTTCGTGTCTTTCGTCCA
TCAAACGTCCGCTTTGATCCTAGGAAACTGGACGTTCCTGATGACTTCTT
CGAACCCACAACAGGTGAACTTAAGAACATCGTCCATCAAAATGCTGCTA
CTATTGCCCAAATGCAAGACAAGCCATTACTGACCAAGAAGCTACGAGAC
GCCGAAAAACACCAGCGTATGAATCGCTTTCGTCGCGCTATTATACGTAT
TCTTTTCCCTGATCGCATTGCCATTCAAGGTACTTTCTTGCCATCAAGCA
CTATTCGCGAGGTTATTCGCTTTGTAAGAGCCGCCCTTTTGGATGCCCGA
AACGTCAAGTTCCATTTATTTGTTGTTCCGCCGAAGAAAAAATTGCTAGA
CGCAAAGAAAACCTTGTGGGACGAGCAACTGGTTCCCGCTGCCGTACTGC
ATATCGGAATAGAGGAAGGCCCAACAGAATCTAGCCAGTTACTTAAACAG
CATTTACTAGAGAGAATCGAAGACACTCCCGAAAGCATAGCGGCAAGGGT
TGCAGCAGTTACCTCACCTACAAGAACTCTTTCACACCCCAGCAGTTCAG
AAAAGAAATCTCCAAAACAGAAAGGAGGAAAGAAGATCCCCAAATGGTTC
ACGAAAAAGTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:52933..53694-

>Ggra10537.t1 ID=Ggra10537.t1|Name=Ggra10537.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000904_pilon:52933..53694- (Gracilaria gracilis GNS1m male)
ATGGACAACTCTACTAGTGAACCAAGGGCTGCATTGGACAATGAGCCGGA
ATCGAAGCAACCTGAAGAGCTAGAACAACCGAAGAAGCTCTCCCCAGAAG
AAGTAGCTCAGGGCGTTCTTGACCAACGCCAAGTTCGTGTCTTTCGTCCA
TCAAACGTCCGCTTTGATCCTAGGAAACTGGACGTTCCTGATGACTTCTT
CGAACCCACAACAGGTGAACTTAAGAACATCGTCCATCAAAATGCTGCTA
CTATTGCCCAAATGCAAGACAAGCCATTACTGACCAAGAAGCTACGAGAC
GCCGAAAAACACCAGCGTATGAATCGCTTTCGTCGCGCTATTATACGTAT
TCTTTTCCCTGATCGCATTGCCATTCAAGGTACTTTCTTGCCATCAAGCA
CTATTCGCGAGGTTATTCGCTTTGTAAGAGCCGCCCTTTTGGATGCCCGA
AACGTCAAGTTCCATTTATTTGTTGTTCCGCCGAAGAAAAAATTGCTAGA
CGCAAAGAAAACCTTGTGGGACGAGCAACTGGTTCCCGCTGCCGTACTGC
ATATCGGAATAGAGGAAGGCCCAACAGAATCTAGCCAGTTACTTAAACAG
CATTTACTAGAGAGAATCGAAGACACTCCCGAAAGCATAGCGGCAAGGGT
TGCAGCAGTTACCTCACCTACAAGAACTCTTTCACACCCCAGCAGTTCAG
AAAAGAAATCTCCAAAACAGAAAGGAGGAAAGAAGATCCCCAAATGGTTC
ACGAAAAAGTAA
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