Ggra10536.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10536.t2
Unique NameGgra10536.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:50362..51696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000018638
PFAMsATP-grasp_2,Ligase_CoA
Max annot lvl121069|Pythiales
Evalue2.17e-166
EggNOG OGsCOG0045@1|root,KOG2799@2759|Eukaryota,1MC01@121069|Pythiales
DescriptionSuccinyl-CoA ligase beta-chain, mitochondrial. Source PGD
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10536Ggra10536Gracilaria gracilis GNS1m malegenetig00000904_pilon 50362..51696 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10536.t2.stop1Ggra10536.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 50362..50364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10536.t2.CDS1Ggra10536.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 50362..51696 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10536.t2.exon1Ggra10536.t2.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 50362..51696 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10536.t2.start1Ggra10536.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 51694..51696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10536.t2Ggra10536.t2Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 50362..51696 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10536.t2 ID=Ggra10536.t2|Name=Ggra10536.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=445bp
MNFSVLPLRSLRCTRLFQKESHSSILRAASAMRFLNLHEYQSQQLMRESG
INVPKGFDVDSRNAALNAANSFDGKDIVVKAQVLAGGRGLGTFKNGFKGG
VHICYDPEKAADVAENMIGQYLVTKQTGEQGRLCSKALVTERVYLRREMY
FAITYDRESQGPVIIASRVGGTSIEDIAAADPSAITKIAVNMAQGLTKED
TKKCAKALGFTDDESIKVASEQVEKLYQMFIEKDATLVEVNPIAETPEGD
VICIDAKINFDDNAEFRHKDLFDMRDTSQEDPREVRAQKFDLNYIGLDGN
IGCLVNGAGLAMATMDIIKLHGGDPANFLDVGGSATETQVTEAFKILNDD
PKVEAILVNIFGGIMRCDIIAQGIINAAKTIDMRIPVVVRLQGNKVEEAK
ELIQASGLKLVATDDLDQAAKKACTLAEIVRLANSVDVNVSFHS*
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spliced messenger RNA

>Ggra10536.t2 ID=Ggra10536.t2|Name=Ggra10536.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000904_pilon:50362..51696- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTCTCGGTGCTACCTCTCAGATCGTTGCGATGCACGCGGTTGTT
TCAAAAGGAATCGCACTCGTCTATTCTCCGTGCAGCCTCAGCGATGCGTT
TTCTTAATCTTCATGAATATCAGAGTCAGCAGTTAATGCGCGAGTCTGGG
ATAAATGTGCCGAAAGGTTTCGATGTGGATTCCCGAAATGCCGCTTTGAA
TGCTGCAAATTCATTCGATGGTAAAGATATCGTTGTCAAAGCCCAAGTCT
TGGCAGGGGGTCGAGGTCTTGGAACATTTAAGAATGGCTTCAAGGGTGGA
GTCCACATCTGCTATGACCCCGAAAAAGCTGCAGATGTCGCAGAAAACAT
GATCGGTCAATATCTCGTTACTAAACAAACTGGAGAGCAAGGGCGACTTT
GCTCAAAGGCATTAGTAACCGAGCGTGTCTACCTGAGGAGGGAAATGTAC
TTTGCGATCACCTATGACAGAGAAAGCCAGGGACCTGTAATCATAGCCAG
TCGTGTAGGGGGGACGTCCATCGAAGATATCGCAGCTGCAGATCCGTCAG
CGATAACGAAGATAGCCGTGAACATGGCACAAGGACTAACTAAGGAGGAC
ACTAAAAAGTGTGCCAAGGCATTAGGATTTACGGATGACGAATCCATCAA
GGTGGCTAGTGAACAAGTGGAAAAGCTCTATCAGATGTTTATTGAAAAGG
ATGCCACGCTTGTGGAAGTCAATCCCATCGCAGAGACTCCGGAAGGTGAT
GTGATTTGCATTGACGCAAAGATCAATTTTGACGATAACGCAGAATTCCG
ACATAAGGATCTGTTTGATATGCGTGATACCAGTCAAGAAGATCCCCGGG
AAGTTCGAGCTCAGAAGTTCGATCTCAACTACATTGGCTTGGATGGAAAC
ATTGGCTGTCTTGTAAACGGAGCCGGACTAGCTATGGCAACTATGGATAT
AATTAAGCTCCACGGAGGAGACCCTGCGAACTTTTTAGACGTCGGAGGAA
GCGCAACGGAAACTCAAGTAACAGAGGCCTTTAAGATTTTGAATGATGAT
CCAAAAGTAGAAGCTATACTTGTCAACATCTTTGGCGGAATCATGAGATG
TGACATAATCGCGCAGGGTATCATTAACGCGGCTAAAACTATCGACATGC
GTATTCCCGTCGTTGTGAGACTTCAAGGTAATAAGGTCGAAGAAGCCAAG
GAGCTAATTCAGGCTAGTGGTCTCAAGTTGGTTGCCACCGACGATCTTGA
TCAAGCCGCCAAGAAGGCTTGCACACTTGCCGAAATTGTGAGGCTCGCTA
ATTCTGTAGACGTCAATGTTTCGTTCCACTCTTGA
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protein sequence of Ggra10536.t2

>Ggra10536.t2 ID=Ggra10536.t2|Name=Ggra10536.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=445bp
MNFSVLPLRSLRCTRLFQKESHSSILRAASAMRFLNLHEYQSQQLMRESG
INVPKGFDVDSRNAALNAANSFDGKDIVVKAQVLAGGRGLGTFKNGFKGG
VHICYDPEKAADVAENMIGQYLVTKQTGEQGRLCSKALVTERVYLRREMY
FAITYDRESQGPVIIASRVGGTSIEDIAAADPSAITKIAVNMAQGLTKED
TKKCAKALGFTDDESIKVASEQVEKLYQMFIEKDATLVEVNPIAETPEGD
VICIDAKINFDDNAEFRHKDLFDMRDTSQEDPREVRAQKFDLNYIGLDGN
IGCLVNGAGLAMATMDIIKLHGGDPANFLDVGGSATETQVTEAFKILNDD
PKVEAILVNIFGGIMRCDIIAQGIINAAKTIDMRIPVVVRLQGNKVEEAK
ELIQASGLKLVATDDLDQAAKKACTLAEIVRLANSVDVNVSFHS*
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mRNA from alignment at tig00000904_pilon:50362..51696-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10536.t2 ID=Ggra10536.t2|Name=Ggra10536.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000904_pilon:50362..51696- (Gracilaria gracilis GNS1m male)
ATGAACTTCTCGGTGCTACCTCTCAGATCGTTGCGATGCACGCGGTTGTT
TCAAAAGGAATCGCACTCGTCTATTCTCCGTGCAGCCTCAGCGATGCGTT
TTCTTAATCTTCATGAATATCAGAGTCAGCAGTTAATGCGCGAGTCTGGG
ATAAATGTGCCGAAAGGTTTCGATGTGGATTCCCGAAATGCCGCTTTGAA
TGCTGCAAATTCATTCGATGGTAAAGATATCGTTGTCAAAGCCCAAGTCT
TGGCAGGGGGTCGAGGTCTTGGAACATTTAAGAATGGCTTCAAGGGTGGA
GTCCACATCTGCTATGACCCCGAAAAAGCTGCAGATGTCGCAGAAAACAT
GATCGGTCAATATCTCGTTACTAAACAAACTGGAGAGCAAGGGCGACTTT
GCTCAAAGGCATTAGTAACCGAGCGTGTCTACCTGAGGAGGGAAATGTAC
TTTGCGATCACCTATGACAGAGAAAGCCAGGGACCTGTAATCATAGCCAG
TCGTGTAGGGGGGACGTCCATCGAAGATATCGCAGCTGCAGATCCGTCAG
CGATAACGAAGATAGCCGTGAACATGGCACAAGGACTAACTAAGGAGGAC
ACTAAAAAGTGTGCCAAGGCATTAGGATTTACGGATGACGAATCCATCAA
GGTGGCTAGTGAACAAGTGGAAAAGCTCTATCAGATGTTTATTGAAAAGG
ATGCCACGCTTGTGGAAGTCAATCCCATCGCAGAGACTCCGGAAGGTGAT
GTGATTTGCATTGACGCAAAGATCAATTTTGACGATAACGCAGAATTCCG
ACATAAGGATCTGTTTGATATGCGTGATACCAGTCAAGAAGATCCCCGGG
AAGTTCGAGCTCAGAAGTTCGATCTCAACTACATTGGCTTGGATGGAAAC
ATTGGCTGTCTTGTAAACGGAGCCGGACTAGCTATGGCAACTATGGATAT
AATTAAGCTCCACGGAGGAGACCCTGCGAACTTTTTAGACGTCGGAGGAA
GCGCAACGGAAACTCAAGTAACAGAGGCCTTTAAGATTTTGAATGATGAT
CCAAAAGTAGAAGCTATACTTGTCAACATCTTTGGCGGAATCATGAGATG
TGACATAATCGCGCAGGGTATCATTAACGCGGCTAAAACTATCGACATGC
GTATTCCCGTCGTTGTGAGACTTCAAGGTAATAAGGTCGAAGAAGCCAAG
GAGCTAATTCAGGCTAGTGGTCTCAAGTTGGTTGCCACCGACGATCTTGA
TCAAGCCGCCAAGAAGGCTTGCACACTTGCCGAAATTGTGAGGCTCGCTA
ATTCTGTAGACGTCAATGTTTCGTTCCACTCTTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:50362..51696-

>Ggra10536.t2 ID=Ggra10536.t2|Name=Ggra10536.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00000904_pilon:50362..51696- (Gracilaria gracilis GNS1m male)
ATGAACTTCTCGGTGCTACCTCTCAGATCGTTGCGATGCACGCGGTTGTT
TCAAAAGGAATCGCACTCGTCTATTCTCCGTGCAGCCTCAGCGATGCGTT
TTCTTAATCTTCATGAATATCAGAGTCAGCAGTTAATGCGCGAGTCTGGG
ATAAATGTGCCGAAAGGTTTCGATGTGGATTCCCGAAATGCCGCTTTGAA
TGCTGCAAATTCATTCGATGGTAAAGATATCGTTGTCAAAGCCCAAGTCT
TGGCAGGGGGTCGAGGTCTTGGAACATTTAAGAATGGCTTCAAGGGTGGA
GTCCACATCTGCTATGACCCCGAAAAAGCTGCAGATGTCGCAGAAAACAT
GATCGGTCAATATCTCGTTACTAAACAAACTGGAGAGCAAGGGCGACTTT
GCTCAAAGGCATTAGTAACCGAGCGTGTCTACCTGAGGAGGGAAATGTAC
TTTGCGATCACCTATGACAGAGAAAGCCAGGGACCTGTAATCATAGCCAG
TCGTGTAGGGGGGACGTCCATCGAAGATATCGCAGCTGCAGATCCGTCAG
CGATAACGAAGATAGCCGTGAACATGGCACAAGGACTAACTAAGGAGGAC
ACTAAAAAGTGTGCCAAGGCATTAGGATTTACGGATGACGAATCCATCAA
GGTGGCTAGTGAACAAGTGGAAAAGCTCTATCAGATGTTTATTGAAAAGG
ATGCCACGCTTGTGGAAGTCAATCCCATCGCAGAGACTCCGGAAGGTGAT
GTGATTTGCATTGACGCAAAGATCAATTTTGACGATAACGCAGAATTCCG
ACATAAGGATCTGTTTGATATGCGTGATACCAGTCAAGAAGATCCCCGGG
AAGTTCGAGCTCAGAAGTTCGATCTCAACTACATTGGCTTGGATGGAAAC
ATTGGCTGTCTTGTAAACGGAGCCGGACTAGCTATGGCAACTATGGATAT
AATTAAGCTCCACGGAGGAGACCCTGCGAACTTTTTAGACGTCGGAGGAA
GCGCAACGGAAACTCAAGTAACAGAGGCCTTTAAGATTTTGAATGATGAT
CCAAAAGTAGAAGCTATACTTGTCAACATCTTTGGCGGAATCATGAGATG
TGACATAATCGCGCAGGGTATCATTAACGCGGCTAAAACTATCGACATGC
GTATTCCCGTCGTTGTGAGACTTCAAGGTAATAAGGTCGAAGAAGCCAAG
GAGCTAATTCAGGCTAGTGGTCTCAAGTTGGTTGCCACCGACGATCTTGA
TCAAGCCGCCAAGAAGGCTTGCACACTTGCCGAAATTGTGAGGCTCGCTA
ATTCTGTAGACGTCAATGTTTCGTTCCACTCTTGA
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