Ggra10535.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10535.t1
Unique NameGgra10535.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:49886..50284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10535Ggra10535Gracilaria gracilis GNS1m malegenetig00000904_pilon 49886..50284 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10535.t1.start1Ggra10535.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 49886..49888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10535.t1.CDS1Ggra10535.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 49886..50284 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10535.t1.exon1Ggra10535.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 49886..50284 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10535.t1.stop1Ggra10535.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 50282..50284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10535.t1Ggra10535.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 49886..50284 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10535.t1 ID=Ggra10535.t1|Name=Ggra10535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=133bp
MDFIGSYYVPSSDPFPTPRNAEPPVFHELPLPRGNPDEGLLEKIKNGDFS
EVRKLRKMGERRKPTVRFVAPACHDKETLVDIALTPKHDEAELKSQENRE
EDKSGNKEKERAERDNRVSIFGIKFGRPHNRR*
back to top

spliced messenger RNA

>Ggra10535.t1 ID=Ggra10535.t1|Name=Ggra10535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000904_pilon:49886..50284+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTTATCGGAAGCTATTACGTTCCTTCTTCTGATCCCTTTCCGAC
CCCAAGGAATGCAGAGCCGCCAGTGTTCCACGAACTCCCGCTTCCAAGGG
GAAACCCAGATGAAGGCCTTCTTGAGAAGATAAAGAACGGAGATTTCTCG
GAAGTCCGAAAGTTGCGGAAGATGGGTGAGCGCCGGAAGCCCACGGTACG
TTTCGTGGCACCGGCCTGTCACGACAAAGAAACCTTGGTAGATATAGCGC
TCACTCCGAAACATGACGAAGCGGAACTCAAATCACAAGAGAATCGGGAA
GAGGATAAGAGTGGTAACAAGGAGAAGGAAAGAGCCGAACGGGACAACCG
CGTTTCTATTTTCGGCATAAAGTTTGGAAGGCCTCACAATCGTCGTTGA
back to top

protein sequence of Ggra10535.t1

>Ggra10535.t1 ID=Ggra10535.t1|Name=Ggra10535.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=133bp
MDFIGSYYVPSSDPFPTPRNAEPPVFHELPLPRGNPDEGLLEKIKNGDFS
EVRKLRKMGERRKPTVRFVAPACHDKETLVDIALTPKHDEAELKSQENRE
EDKSGNKEKERAERDNRVSIFGIKFGRPHNRR*
back to top

mRNA from alignment at tig00000904_pilon:49886..50284+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10535.t1 ID=Ggra10535.t1|Name=Ggra10535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000904_pilon:49886..50284+ (Gracilaria gracilis GNS1m male)
ATGGATTTTATCGGAAGCTATTACGTTCCTTCTTCTGATCCCTTTCCGAC
CCCAAGGAATGCAGAGCCGCCAGTGTTCCACGAACTCCCGCTTCCAAGGG
GAAACCCAGATGAAGGCCTTCTTGAGAAGATAAAGAACGGAGATTTCTCG
GAAGTCCGAAAGTTGCGGAAGATGGGTGAGCGCCGGAAGCCCACGGTACG
TTTCGTGGCACCGGCCTGTCACGACAAAGAAACCTTGGTAGATATAGCGC
TCACTCCGAAACATGACGAAGCGGAACTCAAATCACAAGAGAATCGGGAA
GAGGATAAGAGTGGTAACAAGGAGAAGGAAAGAGCCGAACGGGACAACCG
CGTTTCTATTTTCGGCATAAAGTTTGGAAGGCCTCACAATCGTCGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:49886..50284+

>Ggra10535.t1 ID=Ggra10535.t1|Name=Ggra10535.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=399bp|location=Sequence derived from alignment at tig00000904_pilon:49886..50284+ (Gracilaria gracilis GNS1m male)
ATGGATTTTATCGGAAGCTATTACGTTCCTTCTTCTGATCCCTTTCCGAC
CCCAAGGAATGCAGAGCCGCCAGTGTTCCACGAACTCCCGCTTCCAAGGG
GAAACCCAGATGAAGGCCTTCTTGAGAAGATAAAGAACGGAGATTTCTCG
GAAGTCCGAAAGTTGCGGAAGATGGGTGAGCGCCGGAAGCCCACGGTACG
TTTCGTGGCACCGGCCTGTCACGACAAAGAAACCTTGGTAGATATAGCGC
TCACTCCGAAACATGACGAAGCGGAACTCAAATCACAAGAGAATCGGGAA
GAGGATAAGAGTGGTAACAAGGAGAAGGAAAGAGCCGAACGGGACAACCG
CGTTTCTATTTTCGGCATAAAGTTTGGAAGGCCTCACAATCGTCGTTGA
back to top