Ggra10534.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10534.t1
Unique NameGgra10534.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:48351..48842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10534Ggra10534Gracilaria gracilis GNS1m malegenetig00000904_pilon 48351..48842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10534.t1.stop1Ggra10534.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 48351..48353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10534.t1.CDS1Ggra10534.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 48351..48842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10534.t1.exon1Ggra10534.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 48351..48842 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10534.t1.start1Ggra10534.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 48840..48842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10534.t1Ggra10534.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 48351..48842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10534.t1 ID=Ggra10534.t1|Name=Ggra10534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=164bp
MTSIAADANSEPTEEQSSTTAQAQPPAKKRKGGKKAMNTDLSAEERKRLR
VLKNRESAMRSLAKKAEYSAKLETQEKEALQSFQDSRNSLESLLSTAAAL
KVAMEQVPEDVVQLVSDVEASIKKAGVLTSEDETSDAAAPNGTDDIHESQ
PSEHATSDKDPIF*
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spliced messenger RNA

>Ggra10534.t1 ID=Ggra10534.t1|Name=Ggra10534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000904_pilon:48351..48842- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCCATTGCTGCAGATGCAAACAGTGAACCAACTGAGGAACAGAG
TTCCACAACAGCGCAAGCACAACCTCCAGCAAAAAAACGAAAAGGTGGAA
AGAAAGCCATGAACACTGATCTCTCAGCTGAAGAGCGAAAACGACTTCGA
GTGCTCAAGAACCGTGAAAGTGCCATGCGAAGTCTAGCTAAGAAAGCTGA
GTACTCGGCAAAATTAGAAACTCAGGAGAAGGAAGCATTACAATCGTTCC
AAGACTCTCGCAACAGTCTCGAAAGTCTTTTAAGTACCGCGGCAGCTCTA
AAGGTGGCGATGGAGCAAGTGCCAGAGGATGTGGTACAATTGGTCTCCGA
TGTGGAGGCCTCGATCAAGAAGGCTGGCGTTTTGACAAGCGAGGATGAAA
CGAGCGATGCTGCAGCTCCAAACGGTACAGATGACATACATGAAAGCCAA
CCCTCTGAACATGCCACATCAGACAAGGACCCAATATTCTGA
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protein sequence of Ggra10534.t1

>Ggra10534.t1 ID=Ggra10534.t1|Name=Ggra10534.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=164bp
MTSIAADANSEPTEEQSSTTAQAQPPAKKRKGGKKAMNTDLSAEERKRLR
VLKNRESAMRSLAKKAEYSAKLETQEKEALQSFQDSRNSLESLLSTAAAL
KVAMEQVPEDVVQLVSDVEASIKKAGVLTSEDETSDAAAPNGTDDIHESQ
PSEHATSDKDPIF*
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mRNA from alignment at tig00000904_pilon:48351..48842-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10534.t1 ID=Ggra10534.t1|Name=Ggra10534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000904_pilon:48351..48842- (Gracilaria gracilis GNS1m male)
ATGACATCCATTGCTGCAGATGCAAACAGTGAACCAACTGAGGAACAGAG
TTCCACAACAGCGCAAGCACAACCTCCAGCAAAAAAACGAAAAGGTGGAA
AGAAAGCCATGAACACTGATCTCTCAGCTGAAGAGCGAAAACGACTTCGA
GTGCTCAAGAACCGTGAAAGTGCCATGCGAAGTCTAGCTAAGAAAGCTGA
GTACTCGGCAAAATTAGAAACTCAGGAGAAGGAAGCATTACAATCGTTCC
AAGACTCTCGCAACAGTCTCGAAAGTCTTTTAAGTACCGCGGCAGCTCTA
AAGGTGGCGATGGAGCAAGTGCCAGAGGATGTGGTACAATTGGTCTCCGA
TGTGGAGGCCTCGATCAAGAAGGCTGGCGTTTTGACAAGCGAGGATGAAA
CGAGCGATGCTGCAGCTCCAAACGGTACAGATGACATACATGAAAGCCAA
CCCTCTGAACATGCCACATCAGACAAGGACCCAATATTCTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:48351..48842-

>Ggra10534.t1 ID=Ggra10534.t1|Name=Ggra10534.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00000904_pilon:48351..48842- (Gracilaria gracilis GNS1m male)
ATGACATCCATTGCTGCAGATGCAAACAGTGAACCAACTGAGGAACAGAG
TTCCACAACAGCGCAAGCACAACCTCCAGCAAAAAAACGAAAAGGTGGAA
AGAAAGCCATGAACACTGATCTCTCAGCTGAAGAGCGAAAACGACTTCGA
GTGCTCAAGAACCGTGAAAGTGCCATGCGAAGTCTAGCTAAGAAAGCTGA
GTACTCGGCAAAATTAGAAACTCAGGAGAAGGAAGCATTACAATCGTTCC
AAGACTCTCGCAACAGTCTCGAAAGTCTTTTAAGTACCGCGGCAGCTCTA
AAGGTGGCGATGGAGCAAGTGCCAGAGGATGTGGTACAATTGGTCTCCGA
TGTGGAGGCCTCGATCAAGAAGGCTGGCGTTTTGACAAGCGAGGATGAAA
CGAGCGATGCTGCAGCTCCAAACGGTACAGATGACATACATGAAAGCCAA
CCCTCTGAACATGCCACATCAGACAAGGACCCAATATTCTGA
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