Ggra10438.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10438.t1
Unique NameGgra10438.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:316844..317857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706921.1
PFAMsDUF2470,Pyrid_oxidase_2
Max annot lvl2759|Eukaryota
Evalue9.2e-88
EggNOG OGsCOG0748@1|root,2RYPS@2759|Eukaryota
DescriptionPyridoxamine 5'-phosphate oxidase
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10438Ggra10438Gracilaria gracilis GNS1m malegenetig00000108_pilon 316844..317857 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10438.t1.stop1Ggra10438.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 316844..316846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10438.t1.CDS1Ggra10438.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 316844..317857 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10438.t1.exon1Ggra10438.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 316844..317857 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10438.t1.start1Ggra10438.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 317855..317857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10438.t1Ggra10438.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 316844..317857 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10438.t1 ID=Ggra10438.t1|Name=Ggra10438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=338bp
MSVNAFTPSVPLRAFHTRARLAPALSPRILPKPYVSRARVCRVQPRAAAP
SHTSHTTAAVQDTSAHRLTPAARARTLVNVCNTGTLCTASHRHDGAPFGS
HVDYVLDADGRPIFLLANGAAHTKNLGLDKRCSLFVQPPSDFGQDACRVT
LVGHIAPLPEEQLDASRDAYIHVHSHAADALQYPDLFKFYTINLHDVFFV
AGYGVQSLWVDVNEFCDAEADPLAHDAPAIVRNLNETKKDDLRRLCKVFL
GDPDPKVCKMAALDRLGFDMRVKDSSGAYREYRVAFREVVSNRFDVQSAL
IKAFQEAWEKENGYDETWAGEDMRPTLLYYATPLEAS*
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spliced messenger RNA

>Ggra10438.t1 ID=Ggra10438.t1|Name=Ggra10438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000108_pilon:316844..317857- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCAACGCCTTCACCCCCAGCGTGCCGCTGCGTGCGTTCCATAC
GCGCGCGCGTCTGGCGCCTGCCTTGTCGCCCCGCATCTTGCCCAAGCCGT
ACGTGAGCCGTGCGCGCGTCTGCCGTGTGCAGCCTCGCGCCGCCGCGCCG
TCGCACACCTCACACACAACCGCCGCCGTGCAAGACACCTCTGCGCATCG
CTTGACGCCCGCTGCTCGCGCGCGTACGCTTGTTAACGTGTGCAACACCG
GCACGTTGTGCACGGCCAGTCACAGACATGATGGTGCTCCGTTTGGCAGC
CATGTCGACTATGTCTTGGACGCTGACGGTCGCCCGATTTTCCTGCTGGC
AAATGGAGCCGCTCACACCAAGAATTTGGGCTTGGACAAGCGCTGTTCTT
TGTTTGTACAGCCGCCTTCCGACTTTGGACAGGATGCGTGTCGCGTCACT
CTGGTTGGCCATATCGCGCCTTTGCCAGAGGAGCAATTGGACGCCTCGCG
TGATGCATATATTCATGTTCACTCTCATGCCGCCGATGCGTTGCAGTATC
CAGACCTTTTCAAGTTCTATACAATCAATCTGCACGATGTTTTCTTCGTG
GCTGGATATGGAGTGCAGTCACTTTGGGTCGATGTCAACGAATTTTGTGA
CGCAGAAGCAGACCCCTTGGCACATGACGCGCCCGCCATCGTCAGAAATC
TCAACGAAACCAAGAAAGATGATTTGAGACGCTTGTGTAAGGTCTTTCTG
GGAGATCCCGACCCCAAGGTGTGCAAAATGGCTGCGCTGGATAGACTTGG
CTTCGACATGCGTGTCAAGGATTCCAGTGGCGCGTATAGGGAATATCGTG
TCGCGTTCAGGGAGGTGGTATCAAATCGCTTTGACGTTCAAAGCGCTCTT
ATTAAGGCGTTCCAGGAGGCTTGGGAAAAAGAAAATGGATATGATGAGAC
ATGGGCGGGAGAAGACATGCGTCCTACATTGCTTTACTATGCGACGCCTT
TGGAAGCATCGTAA
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protein sequence of Ggra10438.t1

>Ggra10438.t1 ID=Ggra10438.t1|Name=Ggra10438.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=338bp
MSVNAFTPSVPLRAFHTRARLAPALSPRILPKPYVSRARVCRVQPRAAAP
SHTSHTTAAVQDTSAHRLTPAARARTLVNVCNTGTLCTASHRHDGAPFGS
HVDYVLDADGRPIFLLANGAAHTKNLGLDKRCSLFVQPPSDFGQDACRVT
LVGHIAPLPEEQLDASRDAYIHVHSHAADALQYPDLFKFYTINLHDVFFV
AGYGVQSLWVDVNEFCDAEADPLAHDAPAIVRNLNETKKDDLRRLCKVFL
GDPDPKVCKMAALDRLGFDMRVKDSSGAYREYRVAFREVVSNRFDVQSAL
IKAFQEAWEKENGYDETWAGEDMRPTLLYYATPLEAS*
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mRNA from alignment at tig00000108_pilon:316844..317857-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10438.t1 ID=Ggra10438.t1|Name=Ggra10438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000108_pilon:316844..317857- (Gracilaria gracilis GNS1m male)
ATGTCCGTCAACGCCTTCACCCCCAGCGTGCCGCTGCGTGCGTTCCATAC
GCGCGCGCGTCTGGCGCCTGCCTTGTCGCCCCGCATCTTGCCCAAGCCGT
ACGTGAGCCGTGCGCGCGTCTGCCGTGTGCAGCCTCGCGCCGCCGCGCCG
TCGCACACCTCACACACAACCGCCGCCGTGCAAGACACCTCTGCGCATCG
CTTGACGCCCGCTGCTCGCGCGCGTACGCTTGTTAACGTGTGCAACACCG
GCACGTTGTGCACGGCCAGTCACAGACATGATGGTGCTCCGTTTGGCAGC
CATGTCGACTATGTCTTGGACGCTGACGGTCGCCCGATTTTCCTGCTGGC
AAATGGAGCCGCTCACACCAAGAATTTGGGCTTGGACAAGCGCTGTTCTT
TGTTTGTACAGCCGCCTTCCGACTTTGGACAGGATGCGTGTCGCGTCACT
CTGGTTGGCCATATCGCGCCTTTGCCAGAGGAGCAATTGGACGCCTCGCG
TGATGCATATATTCATGTTCACTCTCATGCCGCCGATGCGTTGCAGTATC
CAGACCTTTTCAAGTTCTATACAATCAATCTGCACGATGTTTTCTTCGTG
GCTGGATATGGAGTGCAGTCACTTTGGGTCGATGTCAACGAATTTTGTGA
CGCAGAAGCAGACCCCTTGGCACATGACGCGCCCGCCATCGTCAGAAATC
TCAACGAAACCAAGAAAGATGATTTGAGACGCTTGTGTAAGGTCTTTCTG
GGAGATCCCGACCCCAAGGTGTGCAAAATGGCTGCGCTGGATAGACTTGG
CTTCGACATGCGTGTCAAGGATTCCAGTGGCGCGTATAGGGAATATCGTG
TCGCGTTCAGGGAGGTGGTATCAAATCGCTTTGACGTTCAAAGCGCTCTT
ATTAAGGCGTTCCAGGAGGCTTGGGAAAAAGAAAATGGATATGATGAGAC
ATGGGCGGGAGAAGACATGCGTCCTACATTGCTTTACTATGCGACGCCTT
TGGAAGCATCGTAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:316844..317857-

>Ggra10438.t1 ID=Ggra10438.t1|Name=Ggra10438.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00000108_pilon:316844..317857- (Gracilaria gracilis GNS1m male)
ATGTCCGTCAACGCCTTCACCCCCAGCGTGCCGCTGCGTGCGTTCCATAC
GCGCGCGCGTCTGGCGCCTGCCTTGTCGCCCCGCATCTTGCCCAAGCCGT
ACGTGAGCCGTGCGCGCGTCTGCCGTGTGCAGCCTCGCGCCGCCGCGCCG
TCGCACACCTCACACACAACCGCCGCCGTGCAAGACACCTCTGCGCATCG
CTTGACGCCCGCTGCTCGCGCGCGTACGCTTGTTAACGTGTGCAACACCG
GCACGTTGTGCACGGCCAGTCACAGACATGATGGTGCTCCGTTTGGCAGC
CATGTCGACTATGTCTTGGACGCTGACGGTCGCCCGATTTTCCTGCTGGC
AAATGGAGCCGCTCACACCAAGAATTTGGGCTTGGACAAGCGCTGTTCTT
TGTTTGTACAGCCGCCTTCCGACTTTGGACAGGATGCGTGTCGCGTCACT
CTGGTTGGCCATATCGCGCCTTTGCCAGAGGAGCAATTGGACGCCTCGCG
TGATGCATATATTCATGTTCACTCTCATGCCGCCGATGCGTTGCAGTATC
CAGACCTTTTCAAGTTCTATACAATCAATCTGCACGATGTTTTCTTCGTG
GCTGGATATGGAGTGCAGTCACTTTGGGTCGATGTCAACGAATTTTGTGA
CGCAGAAGCAGACCCCTTGGCACATGACGCGCCCGCCATCGTCAGAAATC
TCAACGAAACCAAGAAAGATGATTTGAGACGCTTGTGTAAGGTCTTTCTG
GGAGATCCCGACCCCAAGGTGTGCAAAATGGCTGCGCTGGATAGACTTGG
CTTCGACATGCGTGTCAAGGATTCCAGTGGCGCGTATAGGGAATATCGTG
TCGCGTTCAGGGAGGTGGTATCAAATCGCTTTGACGTTCAAAGCGCTCTT
ATTAAGGCGTTCCAGGAGGCTTGGGAAAAAGAAAATGGATATGATGAGAC
ATGGGCGGGAGAAGACATGCGTCCTACATTGCTTTACTATGCGACGCCTT
TGGAAGCATCGTAA
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