Ggra10401.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10401.t1
Unique Name	Ggra10401.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	508

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000108_pilon	contig	tig00000108_pilon:227123..228646 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10401	Ggra10401	Gracilaria gracilis GNS1m male	gene	tig00000108_pilon 227123..228646 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10401.t1.start1	Ggra10401.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000108_pilon 227123..227125 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10401.t1.CDS1	Ggra10401.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000108_pilon 227123..228646 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10401.t1.exon1	Ggra10401.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000108_pilon 227123..228646 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10401.t1.stop1	Ggra10401.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000108_pilon 228644..228646 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10401.t1	Ggra10401.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000108_pilon 227123..228646 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000108_pilon:227123..228646+
coding sequence from alignment at tig00000108_pilon:227123..228646+

mRNA sequence

>Ggra10401.t1 ID=Ggra10401.t1|Name=Ggra10401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=508bp
MEDILLNINPSILNVLKYIIIALVINPLLEVLVDSIMCAKATFDLLRGRC
ISFSDSKLGIYSLHLVFWGRKRNRCFLALLALFIICPEMLLEFSFSSKTI
AVSQQQQVWKQPNHSQRYIPSPENKNWINEYFKATGFLQEVARVCTEGPE
NMMSRKTNNLEQNEHYQGGLMYFMEGTYAIRKPYINHTDGSVCCSSTREK
AYGRFVVPRVSKVRNGPDVEGLDLDSISNASSNITSIFHRHPVRAINSYE
LTGMVVGVGERGACFEFLCIVINDNRTFVLFTSENEYTQVRVPAVPTVRA
IVMEASGDAVKRLVDNGRQIRLLTALYFENKLVSLDASPSVRLVSKLTLR
QIAFWIMVAANEEGVGGLDDGIMNRTVIGGEKRTVATATDMFPISVSILG
SVWVLLLTSCMILRVMIAAKESRSRSIWSRFWRQQRLQTSKQNMTAQVVE
DLRSLGVLGVSEACDVCIRLVSGKDSKQALRLLPSNVCGASLRRALMQSD
SLKECDV*

spliced messenger RNA

>Ggra10401.t1 ID=Ggra10401.t1|Name=Ggra10401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000108_pilon:227123..228646+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACATTCTTCTCAATATCAATCCCTCTATCCTCAACGTCCTCAA
ATATATCATCATTGCTCTCGTAATCAATCCACTCCTGGAAGTTCTCGTGG
ACTCGATCATGTGTGCGAAAGCCACATTCGATCTTCTCCGCGGTAGATGC
ATTTCCTTTTCTGATTCAAAGCTTGGAATCTATTCATTGCACTTGGTCTT
CTGGGGTCGAAAGCGAAATCGTTGCTTCCTCGCTTTGTTAGCACTTTTCA
TCATATGTCCGGAAATGCTTTTGGAGTTCTCGTTTTCGTCCAAGACCATC
GCTGTTAGTCAACAACAGCAAGTATGGAAGCAACCAAATCATTCCCAGAG
ATACATCCCTTCCCCAGAAAATAAGAACTGGATCAATGAATACTTTAAGG
CAACTGGTTTTCTGCAGGAGGTGGCACGAGTCTGTACTGAGGGGCCTGAG
AATATGATGAGCCGGAAAACCAACAATTTGGAACAAAACGAACACTATCA
AGGAGGCCTGATGTATTTTATGGAAGGAACTTACGCAATCCGTAAACCAT
ATATTAATCACACTGATGGAAGTGTGTGTTGCAGTTCCACCCGAGAAAAA
GCGTATGGAAGATTTGTTGTGCCGCGCGTGTCCAAGGTGAGAAATGGACC
TGATGTAGAAGGACTTGATTTAGATTCTATTTCAAATGCTTCTTCGAACA
TAACTTCAATATTCCACAGGCACCCAGTACGTGCAATCAACAGCTATGAA
CTGACAGGCATGGTGGTAGGTGTAGGTGAACGTGGTGCATGCTTTGAATT
TCTTTGCATCGTAATTAATGACAATAGGACGTTCGTTCTTTTTACCAGCG
AAAATGAATACACTCAAGTACGTGTACCAGCGGTACCGACGGTACGTGCA
ATTGTGATGGAAGCAAGCGGAGATGCTGTGAAAAGGTTGGTGGATAATGG
AAGACAAATCAGATTACTAACGGCCTTGTACTTCGAGAACAAGCTTGTGT
CGTTGGATGCTTCCCCTTCAGTTCGGCTGGTGTCCAAGCTGACGTTACGA
CAAATCGCTTTTTGGATAATGGTGGCAGCAAATGAAGAAGGTGTTGGAGG
TCTTGACGACGGAATCATGAATCGTACAGTAATTGGAGGGGAAAAAAGAA
CAGTAGCAACTGCTACGGATATGTTTCCTATCAGTGTCTCTATTCTGGGG
TCAGTTTGGGTGCTTTTGTTGACATCATGTATGATACTTCGCGTGATGAT
TGCGGCGAAAGAAAGTAGAAGCCGTTCAATTTGGTCGCGGTTTTGGCGGC
AGCAGCGACTGCAGACTTCGAAACAAAACATGACGGCACAGGTGGTCGAA
GACCTTCGAAGTCTCGGTGTTCTAGGAGTTTCAGAGGCTTGTGACGTATG
CATTCGACTTGTAAGCGGAAAGGACAGCAAACAAGCGCTGCGGCTGTTGC
CAAGCAACGTTTGCGGAGCATCCCTAAGACGAGCTCTAATGCAGTCGGAC
AGTCTTAAGGAGTGTGATGTGTAG

protein sequence of Ggra10401.t1

>Ggra10401.t1 ID=Ggra10401.t1|Name=Ggra10401.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=508bp
MEDILLNINPSILNVLKYIIIALVINPLLEVLVDSIMCAKATFDLLRGRC
ISFSDSKLGIYSLHLVFWGRKRNRCFLALLALFIICPEMLLEFSFSSKTI
AVSQQQQVWKQPNHSQRYIPSPENKNWINEYFKATGFLQEVARVCTEGPE
NMMSRKTNNLEQNEHYQGGLMYFMEGTYAIRKPYINHTDGSVCCSSTREK
AYGRFVVPRVSKVRNGPDVEGLDLDSISNASSNITSIFHRHPVRAINSYE
LTGMVVGVGERGACFEFLCIVINDNRTFVLFTSENEYTQVRVPAVPTVRA
IVMEASGDAVKRLVDNGRQIRLLTALYFENKLVSLDASPSVRLVSKLTLR
QIAFWIMVAANEEGVGGLDDGIMNRTVIGGEKRTVATATDMFPISVSILG
SVWVLLLTSCMILRVMIAAKESRSRSIWSRFWRQQRLQTSKQNMTAQVVE
DLRSLGVLGVSEACDVCIRLVSGKDSKQALRLLPSNVCGASLRRALMQSD
SLKECDV*

mRNA from alignment at tig00000108_pilon:227123..228646+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10401.t1 ID=Ggra10401.t1|Name=Ggra10401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000108_pilon:227123..228646+ (Gracilaria gracilis GNS1m male)
ATGGAAGACATTCTTCTCAATATCAATCCCTCTATCCTCAACGTCCTCAA
ATATATCATCATTGCTCTCGTAATCAATCCACTCCTGGAAGTTCTCGTGG
ACTCGATCATGTGTGCGAAAGCCACATTCGATCTTCTCCGCGGTAGATGC
ATTTCCTTTTCTGATTCAAAGCTTGGAATCTATTCATTGCACTTGGTCTT
CTGGGGTCGAAAGCGAAATCGTTGCTTCCTCGCTTTGTTAGCACTTTTCA
TCATATGTCCGGAAATGCTTTTGGAGTTCTCGTTTTCGTCCAAGACCATC
GCTGTTAGTCAACAACAGCAAGTATGGAAGCAACCAAATCATTCCCAGAG
ATACATCCCTTCCCCAGAAAATAAGAACTGGATCAATGAATACTTTAAGG
CAACTGGTTTTCTGCAGGAGGTGGCACGAGTCTGTACTGAGGGGCCTGAG
AATATGATGAGCCGGAAAACCAACAATTTGGAACAAAACGAACACTATCA
AGGAGGCCTGATGTATTTTATGGAAGGAACTTACGCAATCCGTAAACCAT
ATATTAATCACACTGATGGAAGTGTGTGTTGCAGTTCCACCCGAGAAAAA
GCGTATGGAAGATTTGTTGTGCCGCGCGTGTCCAAGGTGAGAAATGGACC
TGATGTAGAAGGACTTGATTTAGATTCTATTTCAAATGCTTCTTCGAACA
TAACTTCAATATTCCACAGGCACCCAGTACGTGCAATCAACAGCTATGAA
CTGACAGGCATGGTGGTAGGTGTAGGTGAACGTGGTGCATGCTTTGAATT
TCTTTGCATCGTAATTAATGACAATAGGACGTTCGTTCTTTTTACCAGCG
AAAATGAATACACTCAAGTACGTGTACCAGCGGTACCGACGGTACGTGCA
ATTGTGATGGAAGCAAGCGGAGATGCTGTGAAAAGGTTGGTGGATAATGG
AAGACAAATCAGATTACTAACGGCCTTGTACTTCGAGAACAAGCTTGTGT
CGTTGGATGCTTCCCCTTCAGTTCGGCTGGTGTCCAAGCTGACGTTACGA
CAAATCGCTTTTTGGATAATGGTGGCAGCAAATGAAGAAGGTGTTGGAGG
TCTTGACGACGGAATCATGAATCGTACAGTAATTGGAGGGGAAAAAAGAA
CAGTAGCAACTGCTACGGATATGTTTCCTATCAGTGTCTCTATTCTGGGG
TCAGTTTGGGTGCTTTTGTTGACATCATGTATGATACTTCGCGTGATGAT
TGCGGCGAAAGAAAGTAGAAGCCGTTCAATTTGGTCGCGGTTTTGGCGGC
AGCAGCGACTGCAGACTTCGAAACAAAACATGACGGCACAGGTGGTCGAA
GACCTTCGAAGTCTCGGTGTTCTAGGAGTTTCAGAGGCTTGTGACGTATG
CATTCGACTTGTAAGCGGAAAGGACAGCAAACAAGCGCTGCGGCTGTTGC
CAAGCAACGTTTGCGGAGCATCCCTAAGACGAGCTCTAATGCAGTCGGAC
AGTCTTAAGGAGTGTGATGTGTAG

Coding sequence (CDS) from alignment at tig00000108_pilon:227123..228646+

>Ggra10401.t1 ID=Ggra10401.t1|Name=Ggra10401.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00000108_pilon:227123..228646+ (Gracilaria gracilis GNS1m male)
ATGGAAGACATTCTTCTCAATATCAATCCCTCTATCCTCAACGTCCTCAA
ATATATCATCATTGCTCTCGTAATCAATCCACTCCTGGAAGTTCTCGTGG
ACTCGATCATGTGTGCGAAAGCCACATTCGATCTTCTCCGCGGTAGATGC
ATTTCCTTTTCTGATTCAAAGCTTGGAATCTATTCATTGCACTTGGTCTT
CTGGGGTCGAAAGCGAAATCGTTGCTTCCTCGCTTTGTTAGCACTTTTCA
TCATATGTCCGGAAATGCTTTTGGAGTTCTCGTTTTCGTCCAAGACCATC
GCTGTTAGTCAACAACAGCAAGTATGGAAGCAACCAAATCATTCCCAGAG
ATACATCCCTTCCCCAGAAAATAAGAACTGGATCAATGAATACTTTAAGG
CAACTGGTTTTCTGCAGGAGGTGGCACGAGTCTGTACTGAGGGGCCTGAG
AATATGATGAGCCGGAAAACCAACAATTTGGAACAAAACGAACACTATCA
AGGAGGCCTGATGTATTTTATGGAAGGAACTTACGCAATCCGTAAACCAT
ATATTAATCACACTGATGGAAGTGTGTGTTGCAGTTCCACCCGAGAAAAA
GCGTATGGAAGATTTGTTGTGCCGCGCGTGTCCAAGGTGAGAAATGGACC
TGATGTAGAAGGACTTGATTTAGATTCTATTTCAAATGCTTCTTCGAACA
TAACTTCAATATTCCACAGGCACCCAGTACGTGCAATCAACAGCTATGAA
CTGACAGGCATGGTGGTAGGTGTAGGTGAACGTGGTGCATGCTTTGAATT
TCTTTGCATCGTAATTAATGACAATAGGACGTTCGTTCTTTTTACCAGCG
AAAATGAATACACTCAAGTACGTGTACCAGCGGTACCGACGGTACGTGCA
ATTGTGATGGAAGCAAGCGGAGATGCTGTGAAAAGGTTGGTGGATAATGG
AAGACAAATCAGATTACTAACGGCCTTGTACTTCGAGAACAAGCTTGTGT
CGTTGGATGCTTCCCCTTCAGTTCGGCTGGTGTCCAAGCTGACGTTACGA
CAAATCGCTTTTTGGATAATGGTGGCAGCAAATGAAGAAGGTGTTGGAGG
TCTTGACGACGGAATCATGAATCGTACAGTAATTGGAGGGGAAAAAAGAA
CAGTAGCAACTGCTACGGATATGTTTCCTATCAGTGTCTCTATTCTGGGG
TCAGTTTGGGTGCTTTTGTTGACATCATGTATGATACTTCGCGTGATGAT
TGCGGCGAAAGAAAGTAGAAGCCGTTCAATTTGGTCGCGGTTTTGGCGGC
AGCAGCGACTGCAGACTTCGAAACAAAACATGACGGCACAGGTGGTCGAA
GACCTTCGAAGTCTCGGTGTTCTAGGAGTTTCAGAGGCTTGTGACGTATG
CATTCGACTTGTAAGCGGAAAGGACAGCAAACAAGCGCTGCGGCTGTTGC
CAAGCAACGTTTGCGGAGCATCCCTAAGACGAGCTCTAATGCAGTCGGAC
AGTCTTAAGGAGTGTGATGTGTAG