Ggra10400.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10400.t1
Unique NameGgra10400.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:225980..226750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10400Ggra10400Gracilaria gracilis GNS1m malegenetig00000108_pilon 225980..226750 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10400.t1.stop1Ggra10400.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 225980..225982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10400.t1.CDS1Ggra10400.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 225980..226750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10400.t1.exon1Ggra10400.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 225980..226750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10400.t1.start1Ggra10400.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 226748..226750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10400.t1Ggra10400.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 225980..226750 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10400.t1 ID=Ggra10400.t1|Name=Ggra10400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MEGINLNVSSSIWNVIKFVAFSLVLTPILEFLIHSVTQRKATRDVLRGRS
VAFRNTRLGIFSLHGTTWGSTRNRFLLLIIGTMVIAIELVLKFSFSSMPR
SMTTSRRVWMQPAHRERYNFSNTSLPPLFNEPVGFLVAAADSNCALQGDF
NSRRRAEPSSGHLQYVLSGNYTVRLPYLDASDNETVLCSAEKVRKSARFL
IPFVKTRNGLVVDVGTKEHHKQNPEYSAVTIQVPRQPDFFWGTPLLSCMS
GAIRFV*
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spliced messenger RNA

>Ggra10400.t1 ID=Ggra10400.t1|Name=Ggra10400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000108_pilon:225980..226750- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGAATCAACCTCAATGTCTCATCTTCAATTTGGAATGTCATCAA
GTTTGTTGCTTTCTCGCTTGTGTTAACTCCCATCTTGGAATTTCTAATCC
ATTCCGTAACGCAGCGTAAAGCCACGCGGGATGTCCTCCGTGGCCGATCC
GTCGCTTTTCGGAATACCCGTCTAGGTATATTTTCCCTACACGGAACCAC
TTGGGGATCCACTCGTAACCGCTTTCTTCTTTTGATTATTGGAACAATGG
TAATCGCTATCGAGCTCGTTCTAAAGTTTTCTTTCTCATCAATGCCACGG
TCAATGACAACAAGCAGGCGCGTTTGGATGCAGCCCGCCCATCGGGAGCG
ATACAACTTCTCGAATACTTCTCTACCGCCTCTTTTCAATGAGCCTGTGG
GATTCCTGGTTGCTGCTGCCGACTCGAATTGTGCGCTACAAGGGGACTTC
AACTCACGACGCCGCGCCGAGCCATCTAGTGGTCATCTACAATACGTTCT
AAGTGGTAACTACACTGTGCGCCTTCCATACCTTGACGCCAGTGACAATG
AAACGGTGTTATGCAGCGCTGAAAAAGTGCGAAAAAGTGCGCGATTCTTA
ATACCGTTTGTAAAGACCCGGAATGGTCTCGTTGTGGATGTTGGCACGAA
GGAGCATCACAAGCAGAATCCCGAGTACTCCGCTGTAACTATTCAAGTGC
CGCGCCAGCCAGATTTTTTTTGGGGGACGCCGCTATTGAGCTGTATGTCG
GGCGCAATTCGCTTTGTATAA
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protein sequence of Ggra10400.t1

>Ggra10400.t1 ID=Ggra10400.t1|Name=Ggra10400.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MEGINLNVSSSIWNVIKFVAFSLVLTPILEFLIHSVTQRKATRDVLRGRS
VAFRNTRLGIFSLHGTTWGSTRNRFLLLIIGTMVIAIELVLKFSFSSMPR
SMTTSRRVWMQPAHRERYNFSNTSLPPLFNEPVGFLVAAADSNCALQGDF
NSRRRAEPSSGHLQYVLSGNYTVRLPYLDASDNETVLCSAEKVRKSARFL
IPFVKTRNGLVVDVGTKEHHKQNPEYSAVTIQVPRQPDFFWGTPLLSCMS
GAIRFV*
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mRNA from alignment at tig00000108_pilon:225980..226750-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10400.t1 ID=Ggra10400.t1|Name=Ggra10400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000108_pilon:225980..226750- (Gracilaria gracilis GNS1m male)
ATGGAAGGAATCAACCTCAATGTCTCATCTTCAATTTGGAATGTCATCAA
GTTTGTTGCTTTCTCGCTTGTGTTAACTCCCATCTTGGAATTTCTAATCC
ATTCCGTAACGCAGCGTAAAGCCACGCGGGATGTCCTCCGTGGCCGATCC
GTCGCTTTTCGGAATACCCGTCTAGGTATATTTTCCCTACACGGAACCAC
TTGGGGATCCACTCGTAACCGCTTTCTTCTTTTGATTATTGGAACAATGG
TAATCGCTATCGAGCTCGTTCTAAAGTTTTCTTTCTCATCAATGCCACGG
TCAATGACAACAAGCAGGCGCGTTTGGATGCAGCCCGCCCATCGGGAGCG
ATACAACTTCTCGAATACTTCTCTACCGCCTCTTTTCAATGAGCCTGTGG
GATTCCTGGTTGCTGCTGCCGACTCGAATTGTGCGCTACAAGGGGACTTC
AACTCACGACGCCGCGCCGAGCCATCTAGTGGTCATCTACAATACGTTCT
AAGTGGTAACTACACTGTGCGCCTTCCATACCTTGACGCCAGTGACAATG
AAACGGTGTTATGCAGCGCTGAAAAAGTGCGAAAAAGTGCGCGATTCTTA
ATACCGTTTGTAAAGACCCGGAATGGTCTCGTTGTGGATGTTGGCACGAA
GGAGCATCACAAGCAGAATCCCGAGTACTCCGCTGTAACTATTCAAGTGC
CGCGCCAGCCAGATTTTTTTTGGGGGACGCCGCTATTGAGCTGTATGTCG
GGCGCAATTCGCTTTGTATAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:225980..226750-

>Ggra10400.t1 ID=Ggra10400.t1|Name=Ggra10400.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000108_pilon:225980..226750- (Gracilaria gracilis GNS1m male)
ATGGAAGGAATCAACCTCAATGTCTCATCTTCAATTTGGAATGTCATCAA
GTTTGTTGCTTTCTCGCTTGTGTTAACTCCCATCTTGGAATTTCTAATCC
ATTCCGTAACGCAGCGTAAAGCCACGCGGGATGTCCTCCGTGGCCGATCC
GTCGCTTTTCGGAATACCCGTCTAGGTATATTTTCCCTACACGGAACCAC
TTGGGGATCCACTCGTAACCGCTTTCTTCTTTTGATTATTGGAACAATGG
TAATCGCTATCGAGCTCGTTCTAAAGTTTTCTTTCTCATCAATGCCACGG
TCAATGACAACAAGCAGGCGCGTTTGGATGCAGCCCGCCCATCGGGAGCG
ATACAACTTCTCGAATACTTCTCTACCGCCTCTTTTCAATGAGCCTGTGG
GATTCCTGGTTGCTGCTGCCGACTCGAATTGTGCGCTACAAGGGGACTTC
AACTCACGACGCCGCGCCGAGCCATCTAGTGGTCATCTACAATACGTTCT
AAGTGGTAACTACACTGTGCGCCTTCCATACCTTGACGCCAGTGACAATG
AAACGGTGTTATGCAGCGCTGAAAAAGTGCGAAAAAGTGCGCGATTCTTA
ATACCGTTTGTAAAGACCCGGAATGGTCTCGTTGTGGATGTTGGCACGAA
GGAGCATCACAAGCAGAATCCCGAGTACTCCGCTGTAACTATTCAAGTGC
CGCGCCAGCCAGATTTTTTTTGGGGGACGCCGCTATTGAGCTGTATGTCG
GGCGCAATTCGCTTTGTATAA
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