Ggra10398.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10398.t1
Unique NameGgra10398.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:221420..222148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005650018.1
PFAMsMRP-L27
Max annot lvl3041|Chlorophyta
KEGG koko:K17422
Evalue1.28e-09
EggNOG OGsKOG4756@1|root,KOG4756@2759|Eukaryota,37XWH@33090|Viridiplantae,34NGF@3041|Chlorophyta
DescriptionMitochondrial ribosomal protein L27
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10398Ggra10398Gracilaria gracilis GNS1m malegenetig00000108_pilon 221420..222148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10398.t1Ggra10398.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 221420..222148 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10398.t1.stop1Ggra10398.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 221420..221422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10398.t1.CDS1Ggra10398.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 221420..221626 -
Ggra10398.t1.CDS2Ggra10398.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 221839..221854 -
Ggra10398.t1.CDS3Ggra10398.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000108_pilon 221910..222148 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10398.t1.exon1Ggra10398.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 221420..221626 -
Ggra10398.t1.exon2Ggra10398.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 221839..221854 -
Ggra10398.t1.exon3Ggra10398.t1.exon3Gracilaria gracilis GNS1m maleexontig00000108_pilon 221910..222148 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10398.t1.intron1Ggra10398.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 221627..221838 -
Ggra10398.t1.intron2Ggra10398.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000108_pilon 221855..221909 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10398.t1.start1Ggra10398.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 222146..222148 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10398.t1 ID=Ggra10398.t1|Name=Ggra10398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=154bp
MSGPFRATASALGKYVRAKGGLARKGNASLHPKHGPRFFNKGYGAKSMGR
HTRKGAYIVEHERKVPIYMVPDLEGCELKPDALISSYYNSSTGFNLPTPT
RTHSIHSPILVGCKPCKALGRCMARLKPLPFSFVRLALELLKSFVFPQRP
CRA*
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spliced messenger RNA

>Ggra10398.t1 ID=Ggra10398.t1|Name=Ggra10398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000108_pilon:221420..222148- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCCCGTTCCGTGCGACGGCGTCCGCGCTCGGCAAGTACGTGCG
CGCTAAGGGTGGGCTTGCGCGCAAGGGCAATGCCAGTCTTCACCCCAAGC
ACGGCCCGCGCTTCTTCAACAAGGGTTACGGTGCCAAGTCCATGGGCCGC
CACACGCGCAAGGGCGCTTACATCGTCGAGCACGAGCGAAAGGTGCCGAT
CTACATGGTACCGGATCTGGAGGGGTGTGAACTCAAGCCTGACGCATTGA
TTTCGAGTTACTACAATAGTTCTACTGGTTTTAATTTACCTACTCCGACT
AGGACGCATTCGATACATTCTCCAATCCTTGTCGGTTGCAAACCATGCAA
AGCGCTTGGAAGATGCATGGCCAGACTGAAGCCGCTCCCCTTCTCGTTTG
TACGACTCGCTTTGGAACTCTTGAAGTCTTTTGTTTTCCCCCAAAGACCA
TGCAGAGCCTGA
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protein sequence of Ggra10398.t1

>Ggra10398.t1 ID=Ggra10398.t1|Name=Ggra10398.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MSGPFRATASALGKYVRAKGGLARKGNASLHPKHGPRFFNKGYGAKSMGR
HTRKGAYIVEHERKVPIYMVPDLEGCELKPDALISSYYNSSTGFNLPTPT
RTHSIHSPILVGCKPCKALGRCMARLKPLPFSFVRLALELLKSFVFPQRP
CRA*
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mRNA from alignment at tig00000108_pilon:221420..222148-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10398.t1 ID=Ggra10398.t1|Name=Ggra10398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000108_pilon:221420..222148- (Gracilaria gracilis GNS1m male)
ATGAGCGGCCCGTTCCGTGCGACGGCGTCCGCGCTCGGCAAGTACGTGCG
CGCTAAGGGTGGGCTTGCGCGCAAGGGCAATGCCAGTCTTCACCCCAAGC
ACGGCCCGCGCTTCTTCAACAAGGGTTACGGTGCCAAGTCCATGGGCCGC
CACACGCGCAAGGGCGCTTACATCGTCGAGCACGAGCGAAAGGTGCCGAT
CTACATGGTACCGGATCTGGAGGGGTGTGAACTCAAGCCGTACGTGAGCT
ATAGGACGCCGTTGGTCAAGGTTCCTCCGCCGCCTGTTGTGCAGTGACGC
ATTGATTTCGGTACGTTTCTTGTTTGTTATTATTGTTTTGTGTAGGCGTG
ATGCTTCTTTCCCCGAATGATCGACTATGATTTGAATTCTGGGATGTCAA
GGCTATTTACCAAGCCAGCCTTGGCACCGACTGACCTGCGTTGAGCAGTT
GCCACGACGTTCGTCTTGAATACTAACATATGTGGTTTTGTTTCCCTGGT
TGCGATTTTGTTGTTATGACAGAGTTACTACAATAGTTCTACTGGTTTTA
ATTTACCTACTCCGACTAGGACGCATTCGATACATTCTCCAATCCTTGTC
GGTTGCAAACCATGCAAAGCGCTTGGAAGATGCATGGCCAGACTGAAGCC
GCTCCCCTTCTCGTTTGTACGACTCGCTTTGGAACTCTTGAAGTCTTTTG
TTTTCCCCCAAAGACCATGCAGAGCCTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:221420..222148-

>Ggra10398.t1 ID=Ggra10398.t1|Name=Ggra10398.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00000108_pilon:221420..222148- (Gracilaria gracilis GNS1m male)
ATGAGCGGCCCGTTCCGTGCGACGGCGTCCGCGCTCGGCAAGTACGTGCG
CGCTAAGGGTGGGCTTGCGCGCAAGGGCAATGCCAGTCTTCACCCCAAGC
ACGGCCCGCGCTTCTTCAACAAGGGTTACGGTGCCAAGTCCATGGGCCGC
CACACGCGCAAGGGCGCTTACATCGTCGAGCACGAGCGAAAGGTGCCGAT
CTACATGGTACCGGATCTGGAGGGGTGTGAACTCAAGCCTGACGCATTGA
TTTCGAGTTACTACAATAGTTCTACTGGTTTTAATTTACCTACTCCGACT
AGGACGCATTCGATACATTCTCCAATCCTTGTCGGTTGCAAACCATGCAA
AGCGCTTGGAAGATGCATGGCCAGACTGAAGCCGCTCCCCTTCTCGTTTG
TACGACTCGCTTTGGAACTCTTGAAGTCTTTTGTTTTCCCCCAAAGACCA
TGCAGAGCCTGA
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