Ggra10396.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10396.t1
Unique NameGgra10396.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:216359..217656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128427.KB904821_gene4240
PFAMsDUF915,PGAP1
Max annot lvl1117|Cyanobacteria
Evalue3.42e-54
EggNOG OGsCOG1075@1|root,COG1075@2|Bacteria,1FZWY@1117|Cyanobacteria,1H7A1@1150|Oscillatoriales
Descriptionwith the alpha beta hydrolase fold
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10396Ggra10396Gracilaria gracilis GNS1m malegenetig00000108_pilon 216359..217656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10396.t1Ggra10396.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 216359..217656 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10396.t1.stop1Ggra10396.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 216359..216361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10396.t1.CDS1Ggra10396.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 216359..216507 -
Ggra10396.t1.CDS2Ggra10396.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 216602..217418 -
Ggra10396.t1.CDS3Ggra10396.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000108_pilon 217609..217656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10396.t1.exon1Ggra10396.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 216359..216507 -
Ggra10396.t1.exon2Ggra10396.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 216602..217418 -
Ggra10396.t1.exon3Ggra10396.t1.exon3Gracilaria gracilis GNS1m maleexontig00000108_pilon 217609..217656 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10396.t1.intron1Ggra10396.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 216508..216601 -
Ggra10396.t1.intron2Ggra10396.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000108_pilon 217419..217608 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10396.t1.start1Ggra10396.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 217654..217656 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10396.t1 ID=Ggra10396.t1|Name=Ggra10396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=338bp
MDASIKASFLNGVSSGGATPLCFVSNSSFVLTAFKTDTCTTPYRKNPLYQ
AANARPCATLSDQKPHHTVTSKYQKVDVLDQQQRVSGGNDHKPSNPVVII
PGYGATAKEYYPMAQVLRETIGPDAHVSVVPVTISTWVSTVGGRPITSVL
RLLDEAVQEARQTSASSKVQLVAHSAGGWIARIYLGDIPYPTGSSCVWNG
GRFVSKLVCLGTPHRSDEGVTRKNMHFVNHHYPGAYHGDVQYVNIVGNGG
SIAEQPSGVWKFWQSDWFTRVSYCLTDKSIGSDAAEGDGIVPLSSAFLAG
AHNICLTGIWHSPSSGGAWYGHPDAVNYWSSFLHMQG*
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spliced messenger RNA

>Ggra10396.t1 ID=Ggra10396.t1|Name=Ggra10396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000108_pilon:216359..217656- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGAGTATCAAGGCCTCCTTCCTCAATGGTGTAAGTTCAGGGGG
AGCGACACCGCTATGTTTTGTATCAAACTCTTCGTTCGTATTAACAGCCT
TCAAGACCGATACATGCACTACTCCCTACCGCAAGAACCCTTTATACCAG
GCGGCAAATGCACGTCCGTGCGCCACTCTATCGGATCAAAAGCCCCACCA
CACTGTAACATCCAAATATCAAAAGGTCGATGTCCTTGACCAGCAACAGC
GAGTGTCTGGCGGAAATGATCATAAGCCATCTAATCCGGTTGTAATAATC
CCCGGCTATGGTGCCACCGCCAAAGAGTATTATCCCATGGCACAAGTGCT
CCGTGAGACAATTGGCCCCGATGCTCACGTCAGCGTTGTTCCCGTCACAA
TCTCTACCTGGGTATCCACTGTGGGCGGCCGGCCCATCACCTCTGTCCTG
CGACTGTTGGATGAAGCGGTACAGGAAGCGAGACAGACGTCTGCGTCTTC
CAAAGTCCAACTAGTTGCTCATTCGGCCGGCGGCTGGATTGCTCGCATTT
ATCTGGGCGACATTCCGTACCCAACTGGCTCATCATGTGTGTGGAATGGT
GGGCGCTTTGTCTCCAAGTTAGTGTGTCTCGGTACTCCGCATCGCAGTGA
CGAGGGGGTTACCAGGAAGAATATGCACTTTGTTAATCACCACTACCCAG
GCGCATACCACGGAGACGTTCAGTATGTTAATATAGTTGGGAATGGGGGA
TCGATAGCGGAACAGCCCAGTGGAGTCTGGAAGTTCTGGCAATCGGATTG
GTTCACCAGAGTTAGCTATTGTTTGACTGATAAGTCTATAGGAAGTGATG
CGGCTGAGGGCGACGGAATTGTACCATTATCTTCAGCGTTCCTGGCTGGA
GCACATAATATTTGTTTGACAGGAATCTGGCATTCGCCTTCTTCTGGAGG
TGCCTGGTATGGTCACCCGGATGCAGTGAACTACTGGAGTTCCTTTCTTC
ACATGCAAGGGTAA
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protein sequence of Ggra10396.t1

>Ggra10396.t1 ID=Ggra10396.t1|Name=Ggra10396.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=338bp
MDASIKASFLNGVSSGGATPLCFVSNSSFVLTAFKTDTCTTPYRKNPLYQ
AANARPCATLSDQKPHHTVTSKYQKVDVLDQQQRVSGGNDHKPSNPVVII
PGYGATAKEYYPMAQVLRETIGPDAHVSVVPVTISTWVSTVGGRPITSVL
RLLDEAVQEARQTSASSKVQLVAHSAGGWIARIYLGDIPYPTGSSCVWNG
GRFVSKLVCLGTPHRSDEGVTRKNMHFVNHHYPGAYHGDVQYVNIVGNGG
SIAEQPSGVWKFWQSDWFTRVSYCLTDKSIGSDAAEGDGIVPLSSAFLAG
AHNICLTGIWHSPSSGGAWYGHPDAVNYWSSFLHMQG*
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mRNA from alignment at tig00000108_pilon:216359..217656-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10396.t1 ID=Ggra10396.t1|Name=Ggra10396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1298bp|location=Sequence derived from alignment at tig00000108_pilon:216359..217656- (Gracilaria gracilis GNS1m male)
ATGGATGCGAGTATCAAGGCCTCCTTCCTCAATGGTGTAAGTTCAGGGGT
ACGTTGAGCCTTCTCTGTCATTCTCCTACTCTAGCTAGTAGATAGAGCAC
GGTCGGCTCTGGCATGTTTTGCAGCATTGCTCGTGACTCTCACCGCATTC
GTCGACAGCTTATCGCCATACGTATTCCTTGTCAATGTTCTACACAGTAG
AGCACCGCCATCCTAAGCAGGCGCTGTCTTATGCACAGGGAGCGACACCG
CTATGTTTTGTATCAAACTCTTCGTTCGTATTAACAGCCTTCAAGACCGA
TACATGCACTACTCCCTACCGCAAGAACCCTTTATACCAGGCGGCAAATG
CACGTCCGTGCGCCACTCTATCGGATCAAAAGCCCCACCACACTGTAACA
TCCAAATATCAAAAGGTCGATGTCCTTGACCAGCAACAGCGAGTGTCTGG
CGGAAATGATCATAAGCCATCTAATCCGGTTGTAATAATCCCCGGCTATG
GTGCCACCGCCAAAGAGTATTATCCCATGGCACAAGTGCTCCGTGAGACA
ATTGGCCCCGATGCTCACGTCAGCGTTGTTCCCGTCACAATCTCTACCTG
GGTATCCACTGTGGGCGGCCGGCCCATCACCTCTGTCCTGCGACTGTTGG
ATGAAGCGGTACAGGAAGCGAGACAGACGTCTGCGTCTTCCAAAGTCCAA
CTAGTTGCTCATTCGGCCGGCGGCTGGATTGCTCGCATTTATCTGGGCGA
CATTCCGTACCCAACTGGCTCATCATGTGTGTGGAATGGTGGGCGCTTTG
TCTCCAAGTTAGTGTGTCTCGGTACTCCGCATCGCAGTGACGAGGGGGTT
ACCAGGAAGAATATGCACTTTGTTAATCACCACTACCCAGGCGCATACCA
CGGAGACGTTCAGTATGTTAATATAGTTGGGAATGGGGGATCGATAGCGG
AACAGCCCAGTGGAGTCTGGAAGTTCTGGCAATCGGATTGGTTCACCAGA
GTTAGCTATTGTTTGACTGATAAGTCTATAGGAAGTGATGCGGCTGAGGG
CGACGGTAAGTTCATGGCCCTCGCGCGTACGACCTCTCAACCTAGAACTC
ATGACTGACTGACATTTCTGTCATCGCATTTGCGTACTTCTATGAGCAGG
AATTGTACCATTATCTTCAGCGTTCCTGGCTGGAGCACATAATATTTGTT
TGACAGGAATCTGGCATTCGCCTTCTTCTGGAGGTGCCTGGTATGGTCAC
CCGGATGCAGTGAACTACTGGAGTTCCTTTCTTCACATGCAAGGGTAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:216359..217656-

>Ggra10396.t1 ID=Ggra10396.t1|Name=Ggra10396.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00000108_pilon:216359..217656- (Gracilaria gracilis GNS1m male)
ATGGATGCGAGTATCAAGGCCTCCTTCCTCAATGGTGTAAGTTCAGGGGG
AGCGACACCGCTATGTTTTGTATCAAACTCTTCGTTCGTATTAACAGCCT
TCAAGACCGATACATGCACTACTCCCTACCGCAAGAACCCTTTATACCAG
GCGGCAAATGCACGTCCGTGCGCCACTCTATCGGATCAAAAGCCCCACCA
CACTGTAACATCCAAATATCAAAAGGTCGATGTCCTTGACCAGCAACAGC
GAGTGTCTGGCGGAAATGATCATAAGCCATCTAATCCGGTTGTAATAATC
CCCGGCTATGGTGCCACCGCCAAAGAGTATTATCCCATGGCACAAGTGCT
CCGTGAGACAATTGGCCCCGATGCTCACGTCAGCGTTGTTCCCGTCACAA
TCTCTACCTGGGTATCCACTGTGGGCGGCCGGCCCATCACCTCTGTCCTG
CGACTGTTGGATGAAGCGGTACAGGAAGCGAGACAGACGTCTGCGTCTTC
CAAAGTCCAACTAGTTGCTCATTCGGCCGGCGGCTGGATTGCTCGCATTT
ATCTGGGCGACATTCCGTACCCAACTGGCTCATCATGTGTGTGGAATGGT
GGGCGCTTTGTCTCCAAGTTAGTGTGTCTCGGTACTCCGCATCGCAGTGA
CGAGGGGGTTACCAGGAAGAATATGCACTTTGTTAATCACCACTACCCAG
GCGCATACCACGGAGACGTTCAGTATGTTAATATAGTTGGGAATGGGGGA
TCGATAGCGGAACAGCCCAGTGGAGTCTGGAAGTTCTGGCAATCGGATTG
GTTCACCAGAGTTAGCTATTGTTTGACTGATAAGTCTATAGGAAGTGATG
CGGCTGAGGGCGACGGAATTGTACCATTATCTTCAGCGTTCCTGGCTGGA
GCACATAATATTTGTTTGACAGGAATCTGGCATTCGCCTTCTTCTGGAGG
TGCCTGGTATGGTCACCCGGATGCAGTGAACTACTGGAGTTCCTTTCTTC
ACATGCAAGGGTAA
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