Ggra1039.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1039.t1
Unique NameGgra1039.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length546
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:871541..873178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13616.ENSMODP00000004526
Preferred nameFMO2
PFAMsFMO-like
Max annot lvl33208|Metazoa
KEGG rclassRC02233
KEGG koko:K00485
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,map00982,map01120
GOsGO:0003674,GO:0003824,GO:0004497,GO:0004499,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009404,GO:0009410,GO:0009987,GO:0012505,GO:0016020,GO:0016491,GO:0016705,GO:0016709,GO:0017144,GO:0019362,GO:0019637,GO:0019748,GO:0031984,GO:0034641,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046496,GO:0050896,GO:0051186,GO:0051716,GO:0055086,GO:0055114,GO:0070887,GO:0070995,GO:0071466,GO:0071704,GO:0072524,GO:0072592,GO:0098827,GO:1901360,GO:1901564
Evalue1.62e-45
EggNOG OGsCOG2072@1|root,KOG1399@2759|Eukaryota,38FDI@33154|Opisthokonta,3BC4Q@33208|Metazoa,3CT6M@33213|Bilateria,47YU2@7711|Chordata,48VWI@7742|Vertebrata,3J3KM@40674|Mammalia,4K9FZ@9263|Metatheria
EC1.14.13.8
DescriptionFlavin containing monooxygenase 2 (non-functional)
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1039Ggra1039Gracilaria gracilis GNS1m malegenetig00000027_pilon 871541..873178 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1039.t1.stop1Ggra1039.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 871541..871543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1039.t1.CDS1Ggra1039.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 871541..873178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1039.t1.exon1Ggra1039.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 871541..873178 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1039.t1.start1Ggra1039.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 873176..873178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1039.t1Ggra1039.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 871541..873178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1039.t1 ID=Ggra1039.t1|Name=Ggra1039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MTKVAIIGCGISGIAAAAACLEQSLQIVVFDRRTQLGGIWSKQQTPVFDN
LTTNTAVFEMYYSRHLPPRINRNHSGPNQDLCFSKAEMYDYLCDYANNTD
VLRHVLLGANVTGVHRLDDNATGQFVLRYDRGEQKALEDTFDHVIVATGN
FDNPFLPPPSQMPGISSFKSQYFHVSSYANPSQLRGKKVLMVGGSHSALE
AVADMLSASEQEGPSSVTVATRTMRQIIVKQRSGRMLCSTYSTRYALLRM
LAGRLSPEQLLREMEMFFVDHDQIHAPPPNVPLIVPPVLGFTVVNASLID
AVKKGRSLAWKVGGVKQITENGAVFADGTSEQFDAIVYATGYKVQVPCLS
EAMQKIITPDDGSNMLELYDFTFHPDLKGISFVGIIPPGTSCFPMFENQA
RWVASTISGQVPMVDDVTMRKKIESNKLLRKEKKYVELKLGCEVLDLFAE
HGGFEVDFSKYPSLSKALILGPLCPSQFRMFGNGKRDEGKELFEREIEAG
GYHVGDTSVEKDVLDELKIVTDVLEKKGIAPTGLRKAVGILSPVS*
back to top

spliced messenger RNA

>Ggra1039.t1 ID=Ggra1039.t1|Name=Ggra1039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000027_pilon:871541..873178- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGGTCGCCATCATTGGCTGCGGCATCTCCGGCATCGCCGCCGC
CGCCGCCTGTCTGGAACAGTCGTTGCAGATCGTCGTCTTCGACCGCAGGA
CCCAGCTCGGAGGCATCTGGTCCAAGCAACAAACGCCCGTCTTCGACAAC
CTCACCACCAACACCGCCGTCTTCGAGATGTACTACTCGCGCCACCTGCC
GCCGCGCATCAACCGCAACCACTCGGGCCCCAATCAGGACCTGTGCTTCT
CCAAGGCGGAGATGTACGACTACTTGTGTGACTATGCCAACAACACAGAC
GTGCTTCGCCATGTATTGCTGGGAGCGAACGTCACGGGCGTGCACAGGCT
TGACGACAATGCCACCGGTCAGTTTGTGCTTCGCTATGATCGGGGTGAAC
AAAAGGCGCTTGAGGATACGTTTGATCACGTGATTGTCGCCACAGGTAAT
TTCGATAACCCGTTCCTGCCACCGCCTTCACAAATGCCGGGCATTTCGTC
GTTCAAGTCTCAGTATTTCCATGTGTCTTCGTACGCCAATCCGTCGCAAT
TGCGAGGCAAGAAGGTGCTCATGGTGGGCGGCTCTCACTCCGCTCTGGAA
GCCGTTGCTGATATGCTATCCGCCTCCGAGCAAGAAGGGCCCTCTTCTGT
CACCGTTGCAACACGCACCATGCGCCAAATCATCGTCAAGCAACGCAGTG
GCCGCATGCTGTGTTCGACCTATTCAACTCGTTATGCGTTGCTCCGCATG
CTGGCTGGCCGTCTTTCGCCGGAACAACTTCTGCGTGAGATGGAGATGTT
CTTCGTGGATCATGACCAGATTCATGCACCGCCGCCCAACGTGCCGCTGA
TTGTACCGCCGGTCTTGGGCTTCACCGTTGTCAATGCCTCGTTGATTGAC
GCCGTGAAGAAGGGCAGATCGCTAGCATGGAAGGTCGGCGGCGTGAAACA
AATCACTGAGAATGGAGCTGTGTTTGCGGATGGAACATCGGAACAATTCG
ACGCCATTGTTTATGCCACTGGGTATAAGGTTCAGGTCCCATGTTTAAGC
GAGGCGATGCAAAAGATCATTACCCCTGATGACGGGTCCAACATGTTGGA
ACTATATGATTTCACGTTCCACCCGGATCTGAAAGGAATTTCTTTCGTCG
GAATCATTCCCCCTGGTACGTCATGTTTCCCCATGTTTGAGAATCAAGCA
CGTTGGGTGGCCTCTACGATCTCTGGCCAAGTGCCTATGGTAGACGATGT
AACCATGAGAAAGAAGATTGAAAGCAACAAGCTGCTAAGAAAGGAAAAGA
AGTACGTGGAGCTGAAACTCGGATGTGAGGTTCTTGACCTGTTCGCCGAG
CACGGAGGATTTGAAGTTGACTTCTCAAAGTACCCAAGTCTGTCAAAGGC
ACTGATACTGGGGCCGTTATGTCCCTCACAGTTCCGAATGTTCGGGAACG
GAAAGCGGGATGAAGGGAAAGAATTGTTTGAGCGAGAGATTGAGGCTGGA
GGATACCATGTTGGGGACACCAGTGTTGAAAAGGATGTCCTGGATGAACT
CAAAATCGTTACTGACGTGCTTGAGAAAAAGGGTATAGCCCCTACAGGAC
TACGCAAAGCTGTAGGTATACTGTCTCCAGTATCATAG
back to top

protein sequence of Ggra1039.t1

>Ggra1039.t1 ID=Ggra1039.t1|Name=Ggra1039.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MTKVAIIGCGISGIAAAAACLEQSLQIVVFDRRTQLGGIWSKQQTPVFDN
LTTNTAVFEMYYSRHLPPRINRNHSGPNQDLCFSKAEMYDYLCDYANNTD
VLRHVLLGANVTGVHRLDDNATGQFVLRYDRGEQKALEDTFDHVIVATGN
FDNPFLPPPSQMPGISSFKSQYFHVSSYANPSQLRGKKVLMVGGSHSALE
AVADMLSASEQEGPSSVTVATRTMRQIIVKQRSGRMLCSTYSTRYALLRM
LAGRLSPEQLLREMEMFFVDHDQIHAPPPNVPLIVPPVLGFTVVNASLID
AVKKGRSLAWKVGGVKQITENGAVFADGTSEQFDAIVYATGYKVQVPCLS
EAMQKIITPDDGSNMLELYDFTFHPDLKGISFVGIIPPGTSCFPMFENQA
RWVASTISGQVPMVDDVTMRKKIESNKLLRKEKKYVELKLGCEVLDLFAE
HGGFEVDFSKYPSLSKALILGPLCPSQFRMFGNGKRDEGKELFEREIEAG
GYHVGDTSVEKDVLDELKIVTDVLEKKGIAPTGLRKAVGILSPVS*
back to top

mRNA from alignment at tig00000027_pilon:871541..873178-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1039.t1 ID=Ggra1039.t1|Name=Ggra1039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000027_pilon:871541..873178- (Gracilaria gracilis GNS1m male)
ATGACAAAGGTCGCCATCATTGGCTGCGGCATCTCCGGCATCGCCGCCGC
CGCCGCCTGTCTGGAACAGTCGTTGCAGATCGTCGTCTTCGACCGCAGGA
CCCAGCTCGGAGGCATCTGGTCCAAGCAACAAACGCCCGTCTTCGACAAC
CTCACCACCAACACCGCCGTCTTCGAGATGTACTACTCGCGCCACCTGCC
GCCGCGCATCAACCGCAACCACTCGGGCCCCAATCAGGACCTGTGCTTCT
CCAAGGCGGAGATGTACGACTACTTGTGTGACTATGCCAACAACACAGAC
GTGCTTCGCCATGTATTGCTGGGAGCGAACGTCACGGGCGTGCACAGGCT
TGACGACAATGCCACCGGTCAGTTTGTGCTTCGCTATGATCGGGGTGAAC
AAAAGGCGCTTGAGGATACGTTTGATCACGTGATTGTCGCCACAGGTAAT
TTCGATAACCCGTTCCTGCCACCGCCTTCACAAATGCCGGGCATTTCGTC
GTTCAAGTCTCAGTATTTCCATGTGTCTTCGTACGCCAATCCGTCGCAAT
TGCGAGGCAAGAAGGTGCTCATGGTGGGCGGCTCTCACTCCGCTCTGGAA
GCCGTTGCTGATATGCTATCCGCCTCCGAGCAAGAAGGGCCCTCTTCTGT
CACCGTTGCAACACGCACCATGCGCCAAATCATCGTCAAGCAACGCAGTG
GCCGCATGCTGTGTTCGACCTATTCAACTCGTTATGCGTTGCTCCGCATG
CTGGCTGGCCGTCTTTCGCCGGAACAACTTCTGCGTGAGATGGAGATGTT
CTTCGTGGATCATGACCAGATTCATGCACCGCCGCCCAACGTGCCGCTGA
TTGTACCGCCGGTCTTGGGCTTCACCGTTGTCAATGCCTCGTTGATTGAC
GCCGTGAAGAAGGGCAGATCGCTAGCATGGAAGGTCGGCGGCGTGAAACA
AATCACTGAGAATGGAGCTGTGTTTGCGGATGGAACATCGGAACAATTCG
ACGCCATTGTTTATGCCACTGGGTATAAGGTTCAGGTCCCATGTTTAAGC
GAGGCGATGCAAAAGATCATTACCCCTGATGACGGGTCCAACATGTTGGA
ACTATATGATTTCACGTTCCACCCGGATCTGAAAGGAATTTCTTTCGTCG
GAATCATTCCCCCTGGTACGTCATGTTTCCCCATGTTTGAGAATCAAGCA
CGTTGGGTGGCCTCTACGATCTCTGGCCAAGTGCCTATGGTAGACGATGT
AACCATGAGAAAGAAGATTGAAAGCAACAAGCTGCTAAGAAAGGAAAAGA
AGTACGTGGAGCTGAAACTCGGATGTGAGGTTCTTGACCTGTTCGCCGAG
CACGGAGGATTTGAAGTTGACTTCTCAAAGTACCCAAGTCTGTCAAAGGC
ACTGATACTGGGGCCGTTATGTCCCTCACAGTTCCGAATGTTCGGGAACG
GAAAGCGGGATGAAGGGAAAGAATTGTTTGAGCGAGAGATTGAGGCTGGA
GGATACCATGTTGGGGACACCAGTGTTGAAAAGGATGTCCTGGATGAACT
CAAAATCGTTACTGACGTGCTTGAGAAAAAGGGTATAGCCCCTACAGGAC
TACGCAAAGCTGTAGGTATACTGTCTCCAGTATCATAG
back to top

Coding sequence (CDS) from alignment at tig00000027_pilon:871541..873178-

>Ggra1039.t1 ID=Ggra1039.t1|Name=Ggra1039.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000027_pilon:871541..873178- (Gracilaria gracilis GNS1m male)
ATGACAAAGGTCGCCATCATTGGCTGCGGCATCTCCGGCATCGCCGCCGC
CGCCGCCTGTCTGGAACAGTCGTTGCAGATCGTCGTCTTCGACCGCAGGA
CCCAGCTCGGAGGCATCTGGTCCAAGCAACAAACGCCCGTCTTCGACAAC
CTCACCACCAACACCGCCGTCTTCGAGATGTACTACTCGCGCCACCTGCC
GCCGCGCATCAACCGCAACCACTCGGGCCCCAATCAGGACCTGTGCTTCT
CCAAGGCGGAGATGTACGACTACTTGTGTGACTATGCCAACAACACAGAC
GTGCTTCGCCATGTATTGCTGGGAGCGAACGTCACGGGCGTGCACAGGCT
TGACGACAATGCCACCGGTCAGTTTGTGCTTCGCTATGATCGGGGTGAAC
AAAAGGCGCTTGAGGATACGTTTGATCACGTGATTGTCGCCACAGGTAAT
TTCGATAACCCGTTCCTGCCACCGCCTTCACAAATGCCGGGCATTTCGTC
GTTCAAGTCTCAGTATTTCCATGTGTCTTCGTACGCCAATCCGTCGCAAT
TGCGAGGCAAGAAGGTGCTCATGGTGGGCGGCTCTCACTCCGCTCTGGAA
GCCGTTGCTGATATGCTATCCGCCTCCGAGCAAGAAGGGCCCTCTTCTGT
CACCGTTGCAACACGCACCATGCGCCAAATCATCGTCAAGCAACGCAGTG
GCCGCATGCTGTGTTCGACCTATTCAACTCGTTATGCGTTGCTCCGCATG
CTGGCTGGCCGTCTTTCGCCGGAACAACTTCTGCGTGAGATGGAGATGTT
CTTCGTGGATCATGACCAGATTCATGCACCGCCGCCCAACGTGCCGCTGA
TTGTACCGCCGGTCTTGGGCTTCACCGTTGTCAATGCCTCGTTGATTGAC
GCCGTGAAGAAGGGCAGATCGCTAGCATGGAAGGTCGGCGGCGTGAAACA
AATCACTGAGAATGGAGCTGTGTTTGCGGATGGAACATCGGAACAATTCG
ACGCCATTGTTTATGCCACTGGGTATAAGGTTCAGGTCCCATGTTTAAGC
GAGGCGATGCAAAAGATCATTACCCCTGATGACGGGTCCAACATGTTGGA
ACTATATGATTTCACGTTCCACCCGGATCTGAAAGGAATTTCTTTCGTCG
GAATCATTCCCCCTGGTACGTCATGTTTCCCCATGTTTGAGAATCAAGCA
CGTTGGGTGGCCTCTACGATCTCTGGCCAAGTGCCTATGGTAGACGATGT
AACCATGAGAAAGAAGATTGAAAGCAACAAGCTGCTAAGAAAGGAAAAGA
AGTACGTGGAGCTGAAACTCGGATGTGAGGTTCTTGACCTGTTCGCCGAG
CACGGAGGATTTGAAGTTGACTTCTCAAAGTACCCAAGTCTGTCAAAGGC
ACTGATACTGGGGCCGTTATGTCCCTCACAGTTCCGAATGTTCGGGAACG
GAAAGCGGGATGAAGGGAAAGAATTGTTTGAGCGAGAGATTGAGGCTGGA
GGATACCATGTTGGGGACACCAGTGTTGAAAAGGATGTCCTGGATGAACT
CAAAATCGTTACTGACGTGCTTGAGAAAAAGGGTATAGCCCCTACAGGAC
TACGCAAAGCTGTAGGTATACTGTCTCCAGTATCATAG
back to top