Ggra10389.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10389.t1
Unique NameGgra10389.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:190652..191071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703722.1
Preferred nameRPP1
PFAMsRibosomal_60s
Max annot lvl2759|Eukaryota
KEGG koko:K02942
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue1.85e-24
EggNOG OGsCOG2058@1|root,KOG1762@2759|Eukaryota
Descriptiontranslational elongation
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10389Ggra10389Gracilaria gracilis GNS1m malegenetig00000108_pilon 190652..191071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10389.t1Ggra10389.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 190652..191071 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10389.t1.start1Ggra10389.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 190652..190654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10389.t1.CDS1Ggra10389.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 190652..190729 +
Ggra10389.t1.CDS2Ggra10389.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 190820..191071 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10389.t1.exon1Ggra10389.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 190652..190729 +
Ggra10389.t1.exon2Ggra10389.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 190820..191071 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10389.t1.intron1Ggra10389.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 190730..190819 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10389.t1.stop1Ggra10389.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 191069..191071 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10389.t1 ID=Ggra10389.t1|Name=Ggra10389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=110bp
MAQTDTNEMACVYAALILHDDGIPVTEDKIKTLTEAAGITVEPYWPAMFA
RLVENVNMDDLISNIGAAPVAAPAAGGAAADGAADEQKEEEKEESEEEEE
EEMEFDLFD*
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spliced messenger RNA

>Ggra10389.t1 ID=Ggra10389.t1|Name=Ggra10389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp|location=Sequence derived from alignment at tig00000108_pilon:190652..191071+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAAACCGATACCAACGAGATGGCGTGCGTGTACGCCGCATTGAT
TCTTCACGATGATGGCATCCCGGTCACCGAGGACAAGATCAAGACACTTA
CCGAAGCCGCCGGTATCACCGTCGAGCCGTACTGGCCGGCCATGTTTGCC
CGTCTCGTGGAAAACGTCAACATGGACGACTTGATAAGCAACATcggcgc
cgcgcccgtcgccgcacctgccgcgggtggcgctgccgccgacggagccg
ccgacgagcagaaggaggaggagaaggaagaatcagaggaagaggaagaa
gaggagATGGAATTCGATCTTTTCGACTAA
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protein sequence of Ggra10389.t1

>Ggra10389.t1 ID=Ggra10389.t1|Name=Ggra10389.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=110bp
MAQTDTNEMACVYAALILHDDGIPVTEDKIKTLTEAAGITVEPYWPAMFA
RLVENVNMDDLISNIGAAPVAAPAAGGAAADGAADEQKEEEKEESEEEEE
EEMEFDLFD*
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mRNA from alignment at tig00000108_pilon:190652..191071+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10389.t1 ID=Ggra10389.t1|Name=Ggra10389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00000108_pilon:190652..191071+ (Gracilaria gracilis GNS1m male)
ATGGCTCAAACCGATACCAACGAGATGGCGTGCGTGTACGCCGCATTGAT
TCTTCACGATGATGGCATCCCGGTCACCGTAAGTAAGCGCACAATTTCGT
ACACGCCATGACGCTCCAGCCACGCGCGTGCATGCGAAACTAACCACGTC
TGTGTGCGTCTTGTAAAGGAGGACAAGATCAAGACACTTACCGAAGCCGC
CGGTATCACCGTCGAGCCGTACTGGCCGGCCATGTTTGCCCGTCTCGTGG
AAAACGTCAACATGGACGACTTGATAAGCAACATcggcgccgcgcccgtc
gccgcacctgccgcgggtggcgctgccgccgacggagccgccgacgagca
gaaggaggaggagaaggaagaatcagaggaagaggaagaagaggagATGG
AATTCGATCTTTTCGACTAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:190652..191071+

>Ggra10389.t1 ID=Ggra10389.t1|Name=Ggra10389.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=330bp|location=Sequence derived from alignment at tig00000108_pilon:190652..191071+ (Gracilaria gracilis GNS1m male)
ATGGCTCAAACCGATACCAACGAGATGGCGTGCGTGTACGCCGCATTGAT
TCTTCACGATGATGGCATCCCGGTCACCGAGGACAAGATCAAGACACTTA
CCGAAGCCGCCGGTATCACCGTCGAGCCGTACTGGCCGGCCATGTTTGCC
CGTCTCGTGGAAAACGTCAACATGGACGACTTGATAAGCAACATcggcgc
cgcgcccgtcgccgcacctgccgcgggtggcgctgccgccgacggagccg
ccgacgagcagaaggaggaggagaaggaagaatcagaggaagaggaagaa
gaggagATGGAATTCGATCTTTTCGACTAA
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