Ggra10388.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10388.t1
Unique NameGgra10388.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:188971..189889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10388Ggra10388Gracilaria gracilis GNS1m malegenetig00000108_pilon 188971..189889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10388.t1Ggra10388.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 188971..189889 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10388.t1.stop1Ggra10388.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 188971..188973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10388.t1.CDS1Ggra10388.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 188971..188977 -
Ggra10388.t1.CDS2Ggra10388.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 189030..189889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10388.t1.exon1Ggra10388.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 188971..188977 -
Ggra10388.t1.exon2Ggra10388.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 189030..189889 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10388.t1.intron1Ggra10388.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 188978..189029 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10388.t1.start1Ggra10388.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 189887..189889 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10388.t1 ID=Ggra10388.t1|Name=Ggra10388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MLRATTTLDLSALYRCGQARDTPPTERAVRAVLANFNNLNALQLKNWPYM
DTHPHILRTCVRARVAPLRLLHLEAVAIDADVMLAAMSTLPQLEQIHLLR
STSIDDDLLRKMALHCTRVDNNFSKLFVSRAARVLGAGVSALIAARFANV
IKVTHCSALHCVEKRQQQGPPLCELILSSNVRLSRVDLQNVDVQTLNLSQ
CTSLSNLSLDVVTLENLNLSGCKVLYGLRIGARTTSFSTLNTINVYGARR
LHADTLRLLYASQQTAYNNLSRLDLNGCSIEHLLLEGW*
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spliced messenger RNA

>Ggra10388.t1 ID=Ggra10388.t1|Name=Ggra10388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000108_pilon:188971..189889- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCGCCACCACCACGCTGGACTTGTCCGCGCTGTACCGCTGCGG
GCAGGCGAGGGACACGCCGCCCACGGAGCGCGCCGTGCGCGCGGTGCTTG
CAAACTTCAACAACTTGAACGCGTTGCAGCTCAAGAACTGGCCGTACATG
GATACGCACCCGCACATTCTGCGCACCTGCGTGCGCGCGCGCGTGGCGCC
GCTCAGGCTGCTGCATCTGGAGGCGGTTGCTATTGACGCCGATGTGATGC
TTGCCGCCATGAGTACTTTGCCGCAGCTTGAGCAGATTCACCTGCTTCGC
TCAACCAGTATTGATGACGACTTGCTGAGGAAGATGGCATTGCATTGCAC
TCGAGTTGATAACAACTTTTCCAAGCTGTTTGTCTCGCGCGCCGCACGCG
TGTTGGGTGCGGGCGTCTCCGCGCTCATTGCCGCCCGCTTTGCCAACGTG
ATCAAGGTCACGCATTGTAGCGCGCTGCACTGCGTGGAAAAGCGCCAGCA
ACAAGGTCCGCCGCTGTGCGAACTCATCCTTTCGTCCAACGTGCGCTTGT
CACGGGTTGATTTGCAAAACGTTGATGTTCAAACGCTCAATCTTTCTCAA
TGTACTTCTCTCTCTAACTTGTCACTTGACGTAGTAACTCTTGAAAACCT
CAACTTGTCCGGATGCAAAGTGTTATATGGCTTGAGAATCGGCGCCAGAA
CCACATCCTTTTCAACTTTGAACACCATCAATGTATACGGCGCGCGCCGA
TTGCATGCAGATACTTTGCGTTTATTGTATGCGTCTCAACAAACTGCTTA
CAACAATCTAAGCAGACTTGACCTCAATGGGTGCAGCATTGAACATCTAC
TTCTCGAAGGCTGGTGA
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protein sequence of Ggra10388.t1

>Ggra10388.t1 ID=Ggra10388.t1|Name=Ggra10388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MLRATTTLDLSALYRCGQARDTPPTERAVRAVLANFNNLNALQLKNWPYM
DTHPHILRTCVRARVAPLRLLHLEAVAIDADVMLAAMSTLPQLEQIHLLR
STSIDDDLLRKMALHCTRVDNNFSKLFVSRAARVLGAGVSALIAARFANV
IKVTHCSALHCVEKRQQQGPPLCELILSSNVRLSRVDLQNVDVQTLNLSQ
CTSLSNLSLDVVTLENLNLSGCKVLYGLRIGARTTSFSTLNTINVYGARR
LHADTLRLLYASQQTAYNNLSRLDLNGCSIEHLLLEGW*
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mRNA from alignment at tig00000108_pilon:188971..189889-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10388.t1 ID=Ggra10388.t1|Name=Ggra10388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=919bp|location=Sequence derived from alignment at tig00000108_pilon:188971..189889- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGCCACCACCACGCTGGACTTGTCCGCGCTGTACCGCTGCGG
GCAGGCGAGGGACACGCCGCCCACGGAGCGCGCCGTGCGCGCGGTGCTTG
CAAACTTCAACAACTTGAACGCGTTGCAGCTCAAGAACTGGCCGTACATG
GATACGCACCCGCACATTCTGCGCACCTGCGTGCGCGCGCGCGTGGCGCC
GCTCAGGCTGCTGCATCTGGAGGCGGTTGCTATTGACGCCGATGTGATGC
TTGCCGCCATGAGTACTTTGCCGCAGCTTGAGCAGATTCACCTGCTTCGC
TCAACCAGTATTGATGACGACTTGCTGAGGAAGATGGCATTGCATTGCAC
TCGAGTTGATAACAACTTTTCCAAGCTGTTTGTCTCGCGCGCCGCACGCG
TGTTGGGTGCGGGCGTCTCCGCGCTCATTGCCGCCCGCTTTGCCAACGTG
ATCAAGGTCACGCATTGTAGCGCGCTGCACTGCGTGGAAAAGCGCCAGCA
ACAAGGTCCGCCGCTGTGCGAACTCATCCTTTCGTCCAACGTGCGCTTGT
CACGGGTTGATTTGCAAAACGTTGATGTTCAAACGCTCAATCTTTCTCAA
TGTACTTCTCTCTCTAACTTGTCACTTGACGTAGTAACTCTTGAAAACCT
CAACTTGTCCGGATGCAAAGTGTTATATGGCTTGAGAATCGGCGCCAGAA
CCACATCCTTTTCAACTTTGAACACCATCAATGTATACGGCGCGCGCCGA
TTGCATGCAGATACTTTGCGTTTATTGTATGCGTCTCAACAAACTGCTTA
CAACAATCTAAGCAGACTTGACCTCAATGGGTGCAGCATTGAACATCTAC
TTCTCGAAGGGTATGAAAACTTACAGTACGTCGATTGTTCAGGCTGTCGT
TCGCTCACTCAGCTGGTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:188971..189889-

>Ggra10388.t1 ID=Ggra10388.t1|Name=Ggra10388.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000108_pilon:188971..189889- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGCCACCACCACGCTGGACTTGTCCGCGCTGTACCGCTGCGG
GCAGGCGAGGGACACGCCGCCCACGGAGCGCGCCGTGCGCGCGGTGCTTG
CAAACTTCAACAACTTGAACGCGTTGCAGCTCAAGAACTGGCCGTACATG
GATACGCACCCGCACATTCTGCGCACCTGCGTGCGCGCGCGCGTGGCGCC
GCTCAGGCTGCTGCATCTGGAGGCGGTTGCTATTGACGCCGATGTGATGC
TTGCCGCCATGAGTACTTTGCCGCAGCTTGAGCAGATTCACCTGCTTCGC
TCAACCAGTATTGATGACGACTTGCTGAGGAAGATGGCATTGCATTGCAC
TCGAGTTGATAACAACTTTTCCAAGCTGTTTGTCTCGCGCGCCGCACGCG
TGTTGGGTGCGGGCGTCTCCGCGCTCATTGCCGCCCGCTTTGCCAACGTG
ATCAAGGTCACGCATTGTAGCGCGCTGCACTGCGTGGAAAAGCGCCAGCA
ACAAGGTCCGCCGCTGTGCGAACTCATCCTTTCGTCCAACGTGCGCTTGT
CACGGGTTGATTTGCAAAACGTTGATGTTCAAACGCTCAATCTTTCTCAA
TGTACTTCTCTCTCTAACTTGTCACTTGACGTAGTAACTCTTGAAAACCT
CAACTTGTCCGGATGCAAAGTGTTATATGGCTTGAGAATCGGCGCCAGAA
CCACATCCTTTTCAACTTTGAACACCATCAATGTATACGGCGCGCGCCGA
TTGCATGCAGATACTTTGCGTTTATTGTATGCGTCTCAACAAACTGCTTA
CAACAATCTAAGCAGACTTGACCTCAATGGGTGCAGCATTGAACATCTAC
TTCTCGAAGGCTGGTGA
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