Ggra10386.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10386.t1
Unique Name	Ggra10386.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000108_pilon	contig	tig00000108_pilon:179900..180871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	936053.I1CNL2
PFAMs	EamA
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue	3.38e-29
EggNOG OGs	COG0697@1\|root,KOG4510@2759\|Eukaryota,395GA@33154\|Opisthokonta,3NUM2@4751\|Fungi,1GSM9@112252\|Fungi incertae sedis
Description	EamA-like transporter family
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10386	Ggra10386	Gracilaria gracilis GNS1m male	gene	tig00000108_pilon 179900..180871 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10386.t1.start1	Ggra10386.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000108_pilon 179900..179902 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10386.t1.CDS1	Ggra10386.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000108_pilon 179900..180871 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10386.t1.exon1	Ggra10386.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000108_pilon 179900..180871 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10386.t1.stop1	Ggra10386.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000108_pilon 180869..180871 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10386.t1	Ggra10386.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000108_pilon 179900..180871 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000108_pilon:179900..180871+
coding sequence from alignment at tig00000108_pilon:179900..180871+

mRNA sequence

>Ggra10386.t1 ID=Ggra10386.t1|Name=Ggra10386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp
MDKHVKVAVETDPLVSSVRTTTNSISRWLPESRTELQGLLWMCLAALLYP
IPTAVVRLAFLSFDYPASASMILRSGTQLLFSLVLLMTIIRASPLDLSPQ
HQVVLFLRGMMGSIALVAFYKALTYVPAGEVVALFAVSPIATMLLAKVIL
KETTTLSDIICAVLGMVGVWLIVWPDSNPENMLGVLLIVLAILCASSAYV
CVRGMGTDVHFMLCVLSFGAIAFPTTLFLGGQGAIDEIFTNHKGSGVVLV
GCLAGFVAQCSVNRGLQLCKAGEGVIMMNLEVPTGYFLGMWLLDEQPSFV
RVCGSMLVVSAVIVIGVQRLMQS*

spliced messenger RNA

>Ggra10386.t1 ID=Ggra10386.t1|Name=Ggra10386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000108_pilon:179900..180871+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGCATGTTAAAGTTGCAGTCGAGACGGATCCGCTTGTGTCAAG
CGTTCGAACAACCACTAATTCGATAAGTCGATGGCTACCAGAATCGAGAA
CAGAATTACAAGGGTTGCTATGGATGTGTCTCGCTGCGTTACTGTATCCT
ATCCCAACTGCTGTTGTACGGTTAGCGTTCTTGTCCTTTGACTATCCTGC
TTCGGCTTCCATGATTCTTCGTTCCGGTACGCAGCTTCTGTTCTCACTTG
TTCTGCTCATGACGATTATCCGCGCGTCTCCGCTTGACCTGTCGCCACAA
CACCAGGTCGTACTGTTCCTCCGAGGCATGATGGGTTCCATCGCGCTAGT
AGCCTTTTACAAAGCGTTGACATACGTACCTGCAGGTGAGGTGGTTGCGC
TATTCGCCGTGAGCCCTATTGCAACCATGCTGTTGGCAAAGGTGATACTG
AAAGAAACTACCACGCTTTCGGATATCATCTGCGCCGTGCTTGGAATGGT
GGGCGTTTGGTTAATCGTGTGGCCCGATAGCAATCCAGAAAACATGTTGG
GTGTGCTGCTTATCGTGCTTGCGATTTTGTGTGCGTCATCGGCTTACGTG
TGCGTGCGGGGGATGGGGACGGATGTACATTTCATGCTGTGCGTGCTGTC
GTTTGGTGCAATTGCGTTTCCCACAACGCTGTTTCTCGGGGGGCAGGGCG
CCATTGACGAGATCTTCACAAACCACAAGGGTAGCGGTGTGGTGCTCGTG
GGGTGCTTGGCAGGATTCGTGGCGCAGTGCAGCGTGAACAGGGGCCTTCA
GTTGTGCAAAGCCGGGGAAGGTGTGATCATGATGAACTTGGAGGTGCCTA
CCGGGTACTTTTTAGGCATGTGGCTGCTAGACGAGCAACCCAGCTTTGTG
AGAGTGTGCGGGTCGATGCTGGTAGTTTCTGCAGTGATAGTGATCGGGGT
GCAGCGACTGATGCAGAGTTAG

protein sequence of Ggra10386.t1

>Ggra10386.t1 ID=Ggra10386.t1|Name=Ggra10386.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MDKHVKVAVETDPLVSSVRTTTNSISRWLPESRTELQGLLWMCLAALLYP
IPTAVVRLAFLSFDYPASASMILRSGTQLLFSLVLLMTIIRASPLDLSPQ
HQVVLFLRGMMGSIALVAFYKALTYVPAGEVVALFAVSPIATMLLAKVIL
KETTTLSDIICAVLGMVGVWLIVWPDSNPENMLGVLLIVLAILCASSAYV
CVRGMGTDVHFMLCVLSFGAIAFPTTLFLGGQGAIDEIFTNHKGSGVVLV
GCLAGFVAQCSVNRGLQLCKAGEGVIMMNLEVPTGYFLGMWLLDEQPSFV
RVCGSMLVVSAVIVIGVQRLMQS*

mRNA from alignment at tig00000108_pilon:179900..180871+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10386.t1 ID=Ggra10386.t1|Name=Ggra10386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000108_pilon:179900..180871+ (Gracilaria gracilis GNS1m male)
ATGGACAAGCATGTTAAAGTTGCAGTCGAGACGGATCCGCTTGTGTCAAG
CGTTCGAACAACCACTAATTCGATAAGTCGATGGCTACCAGAATCGAGAA
CAGAATTACAAGGGTTGCTATGGATGTGTCTCGCTGCGTTACTGTATCCT
ATCCCAACTGCTGTTGTACGGTTAGCGTTCTTGTCCTTTGACTATCCTGC
TTCGGCTTCCATGATTCTTCGTTCCGGTACGCAGCTTCTGTTCTCACTTG
TTCTGCTCATGACGATTATCCGCGCGTCTCCGCTTGACCTGTCGCCACAA
CACCAGGTCGTACTGTTCCTCCGAGGCATGATGGGTTCCATCGCGCTAGT
AGCCTTTTACAAAGCGTTGACATACGTACCTGCAGGTGAGGTGGTTGCGC
TATTCGCCGTGAGCCCTATTGCAACCATGCTGTTGGCAAAGGTGATACTG
AAAGAAACTACCACGCTTTCGGATATCATCTGCGCCGTGCTTGGAATGGT
GGGCGTTTGGTTAATCGTGTGGCCCGATAGCAATCCAGAAAACATGTTGG
GTGTGCTGCTTATCGTGCTTGCGATTTTGTGTGCGTCATCGGCTTACGTG
TGCGTGCGGGGGATGGGGACGGATGTACATTTCATGCTGTGCGTGCTGTC
GTTTGGTGCAATTGCGTTTCCCACAACGCTGTTTCTCGGGGGGCAGGGCG
CCATTGACGAGATCTTCACAAACCACAAGGGTAGCGGTGTGGTGCTCGTG
GGGTGCTTGGCAGGATTCGTGGCGCAGTGCAGCGTGAACAGGGGCCTTCA
GTTGTGCAAAGCCGGGGAAGGTGTGATCATGATGAACTTGGAGGTGCCTA
CCGGGTACTTTTTAGGCATGTGGCTGCTAGACGAGCAACCCAGCTTTGTG
AGAGTGTGCGGGTCGATGCTGGTAGTTTCTGCAGTGATAGTGATCGGGGT
GCAGCGACTGATGCAGAGTTAG

Coding sequence (CDS) from alignment at tig00000108_pilon:179900..180871+

>Ggra10386.t1 ID=Ggra10386.t1|Name=Ggra10386.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000108_pilon:179900..180871+ (Gracilaria gracilis GNS1m male)
ATGGACAAGCATGTTAAAGTTGCAGTCGAGACGGATCCGCTTGTGTCAAG
CGTTCGAACAACCACTAATTCGATAAGTCGATGGCTACCAGAATCGAGAA
CAGAATTACAAGGGTTGCTATGGATGTGTCTCGCTGCGTTACTGTATCCT
ATCCCAACTGCTGTTGTACGGTTAGCGTTCTTGTCCTTTGACTATCCTGC
TTCGGCTTCCATGATTCTTCGTTCCGGTACGCAGCTTCTGTTCTCACTTG
TTCTGCTCATGACGATTATCCGCGCGTCTCCGCTTGACCTGTCGCCACAA
CACCAGGTCGTACTGTTCCTCCGAGGCATGATGGGTTCCATCGCGCTAGT
AGCCTTTTACAAAGCGTTGACATACGTACCTGCAGGTGAGGTGGTTGCGC
TATTCGCCGTGAGCCCTATTGCAACCATGCTGTTGGCAAAGGTGATACTG
AAAGAAACTACCACGCTTTCGGATATCATCTGCGCCGTGCTTGGAATGGT
GGGCGTTTGGTTAATCGTGTGGCCCGATAGCAATCCAGAAAACATGTTGG
GTGTGCTGCTTATCGTGCTTGCGATTTTGTGTGCGTCATCGGCTTACGTG
TGCGTGCGGGGGATGGGGACGGATGTACATTTCATGCTGTGCGTGCTGTC
GTTTGGTGCAATTGCGTTTCCCACAACGCTGTTTCTCGGGGGGCAGGGCG
CCATTGACGAGATCTTCACAAACCACAAGGGTAGCGGTGTGGTGCTCGTG
GGGTGCTTGGCAGGATTCGTGGCGCAGTGCAGCGTGAACAGGGGCCTTCA
GTTGTGCAAAGCCGGGGAAGGTGTGATCATGATGAACTTGGAGGTGCCTA
CCGGGTACTTTTTAGGCATGTGGCTGCTAGACGAGCAACCCAGCTTTGTG
AGAGTGTGCGGGTCGATGCTGGTAGTTTCTGCAGTGATAGTGATCGGGGT
GCAGCGACTGATGCAGAGTTAG