Ggra10385.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10385.t1
Unique Name	Ggra10385.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000108_pilon	contig	tig00000108_pilon:176701..177534 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FJD3
PFAMs	PAP_fibrillin
Max annot lvl	2759\|Eukaryota
Evalue	2.91e-35
EggNOG OGs	28JPH@1\|root,2QS2T@2759\|Eukaryota
Description	response to acid chemical
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10385	Ggra10385	Gracilaria gracilis GNS1m male	gene	tig00000108_pilon 176701..177534 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10385.t1.start1	Ggra10385.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000108_pilon 176701..176703 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10385.t1.CDS1	Ggra10385.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000108_pilon 176701..177534 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10385.t1.exon1	Ggra10385.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000108_pilon 176701..177534 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10385.t1.stop1	Ggra10385.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000108_pilon 177532..177534 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10385.t1	Ggra10385.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000108_pilon 176701..177534 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000108_pilon:176701..177534+
coding sequence from alignment at tig00000108_pilon:176701..177534+

mRNA sequence

>Ggra10385.t1 ID=Ggra10385.t1|Name=Ggra10385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MAFISSIPVSHSFRVTPPSVCKPPSKRLRTAPKATYPSDSQPPANNDGEP
FSSETPFTSNGTQSPAIDTSFKEVSLHDLKLQFYSRACSVNRGLAASPSS
KELLFSLVEQIERENPTTDPTSSELLTGDWRLLYTNALDVLSLGLLSPLV
LVAEVFQNVRRTDDGTFSVVNVVNFEPSLAPVSNSFFGRTLTSLFVSAVG
TISSDTRIDIQFKGVQVKPVSVCGFELPSQLSTPQLRVGSPTGYIETTFL
DDDIRIARAPPTMSQTPNIFVLQRVDS*

spliced messenger RNA

>Ggra10385.t1 ID=Ggra10385.t1|Name=Ggra10385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000108_pilon:176701..177534+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCATCTCGAGCATCCCCGTCTCGCATTCCTTTCGCGTCACGCC
ACCGTCTGTCTGCAAGCCGCCTTCAAAGCGCCTTAGAACCGCACCCAAAG
CCACCTATCCATCAGACTCGCAACCGCCAGCAAACAACGACGGCGAGCCC
TTCTCCTCCGAAACTCCCTTCACCAGCAACGGCACTCAATCGCCCGCCAT
TGACACCTCCTTCAAAGAAGTCTCTCTACACGACCTCAAGCTCCAGTTCT
ACTCGCGCGCCTGCAGCGTCAACCGCGGTCTTGCCGCCTCCCCGTCGAGC
AAGGAGCTCTTGTTCTCGCTTGTTGAGCAGATTGAGCGCGAAAACCCCAC
CACTGACCCGACCAGCAGTGAGCTCTTGACGGGTGATTGGCGACTGCTCT
ACACAAACGCCCTGGACGTGCTTTCGTTGGGGCTCTTGTCGCCGCTCGTG
CTGGTTGCTGAGGTGTTTCAAAACGTCCGACGCACCGACGATGGCACCTT
TTCGGTAGTCAACGTCGTCAACTTCGAGCCCAGTCTGGCGCCCGTTTCCA
ATTCGTTCTTTGGACGTACCCTCACGTCGTTGTTCGTCAGTGCTGTTGGT
ACCATATCTAGCGATACTCGCATCGATATTCAGTTTAAGGGCGTTCAAGT
CAAGCCTGTTTCTGTGTGTGGGTTTGAATTGCCATCTCAGTTGTCTACCC
CACAGCTTCGAGTGGGATCTCCCACAGGATATATTGAAACAACTTTCTTG
GATGATGACATTCGAATTGCTCGAGCGCCTCCAACCATGTCTCAAACCCC
TAACATATTTGTACTGCAAAGAGTTGACAGTTGA

protein sequence of Ggra10385.t1

>Ggra10385.t1 ID=Ggra10385.t1|Name=Ggra10385.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MAFISSIPVSHSFRVTPPSVCKPPSKRLRTAPKATYPSDSQPPANNDGEP
FSSETPFTSNGTQSPAIDTSFKEVSLHDLKLQFYSRACSVNRGLAASPSS
KELLFSLVEQIERENPTTDPTSSELLTGDWRLLYTNALDVLSLGLLSPLV
LVAEVFQNVRRTDDGTFSVVNVVNFEPSLAPVSNSFFGRTLTSLFVSAVG
TISSDTRIDIQFKGVQVKPVSVCGFELPSQLSTPQLRVGSPTGYIETTFL
DDDIRIARAPPTMSQTPNIFVLQRVDS*

mRNA from alignment at tig00000108_pilon:176701..177534+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10385.t1 ID=Ggra10385.t1|Name=Ggra10385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000108_pilon:176701..177534+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCTCGAGCATCCCCGTCTCGCATTCCTTTCGCGTCACGCC
ACCGTCTGTCTGCAAGCCGCCTTCAAAGCGCCTTAGAACCGCACCCAAAG
CCACCTATCCATCAGACTCGCAACCGCCAGCAAACAACGACGGCGAGCCC
TTCTCCTCCGAAACTCCCTTCACCAGCAACGGCACTCAATCGCCCGCCAT
TGACACCTCCTTCAAAGAAGTCTCTCTACACGACCTCAAGCTCCAGTTCT
ACTCGCGCGCCTGCAGCGTCAACCGCGGTCTTGCCGCCTCCCCGTCGAGC
AAGGAGCTCTTGTTCTCGCTTGTTGAGCAGATTGAGCGCGAAAACCCCAC
CACTGACCCGACCAGCAGTGAGCTCTTGACGGGTGATTGGCGACTGCTCT
ACACAAACGCCCTGGACGTGCTTTCGTTGGGGCTCTTGTCGCCGCTCGTG
CTGGTTGCTGAGGTGTTTCAAAACGTCCGACGCACCGACGATGGCACCTT
TTCGGTAGTCAACGTCGTCAACTTCGAGCCCAGTCTGGCGCCCGTTTCCA
ATTCGTTCTTTGGACGTACCCTCACGTCGTTGTTCGTCAGTGCTGTTGGT
ACCATATCTAGCGATACTCGCATCGATATTCAGTTTAAGGGCGTTCAAGT
CAAGCCTGTTTCTGTGTGTGGGTTTGAATTGCCATCTCAGTTGTCTACCC
CACAGCTTCGAGTGGGATCTCCCACAGGATATATTGAAACAACTTTCTTG
GATGATGACATTCGAATTGCTCGAGCGCCTCCAACCATGTCTCAAACCCC
TAACATATTTGTACTGCAAAGAGTTGACAGTTGA

Coding sequence (CDS) from alignment at tig00000108_pilon:176701..177534+

>Ggra10385.t1 ID=Ggra10385.t1|Name=Ggra10385.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000108_pilon:176701..177534+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCTCGAGCATCCCCGTCTCGCATTCCTTTCGCGTCACGCC
ACCGTCTGTCTGCAAGCCGCCTTCAAAGCGCCTTAGAACCGCACCCAAAG
CCACCTATCCATCAGACTCGCAACCGCCAGCAAACAACGACGGCGAGCCC
TTCTCCTCCGAAACTCCCTTCACCAGCAACGGCACTCAATCGCCCGCCAT
TGACACCTCCTTCAAAGAAGTCTCTCTACACGACCTCAAGCTCCAGTTCT
ACTCGCGCGCCTGCAGCGTCAACCGCGGTCTTGCCGCCTCCCCGTCGAGC
AAGGAGCTCTTGTTCTCGCTTGTTGAGCAGATTGAGCGCGAAAACCCCAC
CACTGACCCGACCAGCAGTGAGCTCTTGACGGGTGATTGGCGACTGCTCT
ACACAAACGCCCTGGACGTGCTTTCGTTGGGGCTCTTGTCGCCGCTCGTG
CTGGTTGCTGAGGTGTTTCAAAACGTCCGACGCACCGACGATGGCACCTT
TTCGGTAGTCAACGTCGTCAACTTCGAGCCCAGTCTGGCGCCCGTTTCCA
ATTCGTTCTTTGGACGTACCCTCACGTCGTTGTTCGTCAGTGCTGTTGGT
ACCATATCTAGCGATACTCGCATCGATATTCAGTTTAAGGGCGTTCAAGT
CAAGCCTGTTTCTGTGTGTGGGTTTGAATTGCCATCTCAGTTGTCTACCC
CACAGCTTCGAGTGGGATCTCCCACAGGATATATTGAAACAACTTTCTTG
GATGATGACATTCGAATTGCTCGAGCGCCTCCAACCATGTCTCAAACCCC
TAACATATTTGTACTGCAAAGAGTTGACAGTTGA