Ggra10383.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10383.t1
Unique NameGgra10383.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:173620..174459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog211165.AJLN01000116_gene3061
Preferred namecpcF
PFAMsHEAT_2,HEAT_PBS
Max annot lvl1117|Cyanobacteria
KEGG koko:K02289
KEGG Pathwayko00196,ko01100,map00196,map01100
Evalue1.09e-21
EggNOG OGsCOG1413@1|root,COG1413@2|Bacteria,1G600@1117|Cyanobacteria,1JI6P@1189|Stigonemataceae
EC4.4.1.32
DescriptionPBS lyase HEAT-like repeat
COG categoryC
BRITEko00000,ko00001,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10383Ggra10383Gracilaria gracilis GNS1m malegenetig00000108_pilon 173620..174459 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10383.t1.stop1Ggra10383.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 173620..173622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10383.t1.CDS1Ggra10383.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 173620..174459 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10383.t1.exon1Ggra10383.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 173620..174459 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10383.t1.start1Ggra10383.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 174457..174459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10383.t1Ggra10383.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 173620..174459 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10383.t1 ID=Ggra10383.t1|Name=Ggra10383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MAPRASLFVCVRPLPRAVPAGHARVCRARPRMSGVNGGIDYQIDLHTLPA
ALAARIASMQHGADSPAALISAAEHIARASREHPQTLPVLVDVLGFNNPA
AARIAIDALVRARGAALPPLLAGVGAFNYSVNAYALRALGAIGDPSVRRV
CEACAAAGPIPNVRRAACAALGALRYATPPHAAAAYRCLLRLADAEPDWG
VRYAAIVALERFARRRLLHAALERQALLVLAAAARGHANVLPAAPDAAPD
AALAPVPFDATVAARATLALQRMSQRSQL*
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spliced messenger RNA

>Ggra10383.t1 ID=Ggra10383.t1|Name=Ggra10383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000108_pilon:173620..174459- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCGCGCCTCATTGTTCGTGTGCGTGCGGCCGCTGCCGCGAGC
TGTGCCTGCCGGCCATGCGCGCGTGTGCCGCGCGCGGCCGCGCATGAGCG
GCGTGAACGGCGGCATCGACTACCAAATCGACCTGCACACGCTGCCAGCG
GCGCTGGCGGCGCGCATCGCGTCCATGCAGCACGGCGCCGACTCGCCCGC
GGCGCTCATCAGCGCGGCGGAGCACATTGCGCGCGCGAGCCGCGAGCACC
CGCAGACGCTGCCGGTGCTGGTGGACGTGCTGGGCTTCAACAACCCGGCG
GCGGCGCGCATCGCCATCGACGCGCTGGTACGCGCGCGCGGCGCCGCGCT
GCCGCCGCTGCTGGCGGGCGTGGGCGCGTTCAACTACTCGGTGAACGCGT
ACGCGCTGCGCGCGCTGGGCGCCATTGGCGACCCGAGCGTGCGGCGCGTG
TGCGAGGCGTGCGCCGCGGCGGGGCCCATCCCCAACGTGCGTCGCGCCGC
GTGCGCCGCGCTGGGCGCGCTGCGCTACGCCACGCCGCCGCACGCCGCCG
CCGCGTACCGCTGCCTGCTGCGCCTGGCCGACGCCGAGCCCGACTGGGGC
GTGCGCTACGCCGCCATCGTCGCGCTGGAGCGCTTTGCGCGCCGTCGTCT
GCTGCACGCCGCGCTCGAGCGCCAGGCGCTGCTCGTGCTGGCCGCCGCCG
CTCGCGGCCACGCCAACGTGCTCCCCGCCGCGCCCGACGCCGCGCCCGAC
GCCGCGCTTGCGCCCGTGCCGTTCGATGCCACCGTGGCGGCGCGCGCCAC
GCTGGCGTTGCAGCGCATGAGCCAACGCTCGCAGCTTTAG
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protein sequence of Ggra10383.t1

>Ggra10383.t1 ID=Ggra10383.t1|Name=Ggra10383.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MAPRASLFVCVRPLPRAVPAGHARVCRARPRMSGVNGGIDYQIDLHTLPA
ALAARIASMQHGADSPAALISAAEHIARASREHPQTLPVLVDVLGFNNPA
AARIAIDALVRARGAALPPLLAGVGAFNYSVNAYALRALGAIGDPSVRRV
CEACAAAGPIPNVRRAACAALGALRYATPPHAAAAYRCLLRLADAEPDWG
VRYAAIVALERFARRRLLHAALERQALLVLAAAARGHANVLPAAPDAAPD
AALAPVPFDATVAARATLALQRMSQRSQL*
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mRNA from alignment at tig00000108_pilon:173620..174459-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10383.t1 ID=Ggra10383.t1|Name=Ggra10383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000108_pilon:173620..174459- (Gracilaria gracilis GNS1m male)
ATGGCGCCGCGCGCCTCATTGTTCGTGTGCGTGCGGCCGCTGCCGCGAGC
TGTGCCTGCCGGCCATGCGCGCGTGTGCCGCGCGCGGCCGCGCATGAGCG
GCGTGAACGGCGGCATCGACTACCAAATCGACCTGCACACGCTGCCAGCG
GCGCTGGCGGCGCGCATCGCGTCCATGCAGCACGGCGCCGACTCGCCCGC
GGCGCTCATCAGCGCGGCGGAGCACATTGCGCGCGCGAGCCGCGAGCACC
CGCAGACGCTGCCGGTGCTGGTGGACGTGCTGGGCTTCAACAACCCGGCG
GCGGCGCGCATCGCCATCGACGCGCTGGTACGCGCGCGCGGCGCCGCGCT
GCCGCCGCTGCTGGCGGGCGTGGGCGCGTTCAACTACTCGGTGAACGCGT
ACGCGCTGCGCGCGCTGGGCGCCATTGGCGACCCGAGCGTGCGGCGCGTG
TGCGAGGCGTGCGCCGCGGCGGGGCCCATCCCCAACGTGCGTCGCGCCGC
GTGCGCCGCGCTGGGCGCGCTGCGCTACGCCACGCCGCCGCACGCCGCCG
CCGCGTACCGCTGCCTGCTGCGCCTGGCCGACGCCGAGCCCGACTGGGGC
GTGCGCTACGCCGCCATCGTCGCGCTGGAGCGCTTTGCGCGCCGTCGTCT
GCTGCACGCCGCGCTCGAGCGCCAGGCGCTGCTCGTGCTGGCCGCCGCCG
CTCGCGGCCACGCCAACGTGCTCCCCGCCGCGCCCGACGCCGCGCCCGAC
GCCGCGCTTGCGCCCGTGCCGTTCGATGCCACCGTGGCGGCGCGCGCCAC
GCTGGCGTTGCAGCGCATGAGCCAACGCTCGCAGCTTTAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:173620..174459-

>Ggra10383.t1 ID=Ggra10383.t1|Name=Ggra10383.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000108_pilon:173620..174459- (Gracilaria gracilis GNS1m male)
ATGGCGCCGCGCGCCTCATTGTTCGTGTGCGTGCGGCCGCTGCCGCGAGC
TGTGCCTGCCGGCCATGCGCGCGTGTGCCGCGCGCGGCCGCGCATGAGCG
GCGTGAACGGCGGCATCGACTACCAAATCGACCTGCACACGCTGCCAGCG
GCGCTGGCGGCGCGCATCGCGTCCATGCAGCACGGCGCCGACTCGCCCGC
GGCGCTCATCAGCGCGGCGGAGCACATTGCGCGCGCGAGCCGCGAGCACC
CGCAGACGCTGCCGGTGCTGGTGGACGTGCTGGGCTTCAACAACCCGGCG
GCGGCGCGCATCGCCATCGACGCGCTGGTACGCGCGCGCGGCGCCGCGCT
GCCGCCGCTGCTGGCGGGCGTGGGCGCGTTCAACTACTCGGTGAACGCGT
ACGCGCTGCGCGCGCTGGGCGCCATTGGCGACCCGAGCGTGCGGCGCGTG
TGCGAGGCGTGCGCCGCGGCGGGGCCCATCCCCAACGTGCGTCGCGCCGC
GTGCGCCGCGCTGGGCGCGCTGCGCTACGCCACGCCGCCGCACGCCGCCG
CCGCGTACCGCTGCCTGCTGCGCCTGGCCGACGCCGAGCCCGACTGGGGC
GTGCGCTACGCCGCCATCGTCGCGCTGGAGCGCTTTGCGCGCCGTCGTCT
GCTGCACGCCGCGCTCGAGCGCCAGGCGCTGCTCGTGCTGGCCGCCGCCG
CTCGCGGCCACGCCAACGTGCTCCCCGCCGCGCCCGACGCCGCGCCCGAC
GCCGCGCTTGCGCCCGTGCCGTTCGATGCCACCGTGGCGGCGCGCGCCAC
GCTGGCGTTGCAGCGCATGAGCCAACGCTCGCAGCTTTAG
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