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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 6500.NP_001191541.1 |
Preferred name | GRIA2 |
PFAMs | ANF_receptor,Lig_chan,Lig_chan-Glu_bd |
Max annot lvl | 33208|Metazoa |
KEGG ko | ko:K05197,ko:K05198,ko:K05199,ko:K05200 |
KEGG TC | 1.A.10.1.1,1.A.10.1.13,1.A.10.1.2,1.A.10.1.4 |
KEGG Pathway | ko04024,ko04080,ko04713,ko04720,ko04723,ko04724,ko04728,ko04730,ko05014,ko05030,ko05031,ko05033,ko05202,map04024,map04080,map04713,map04720,map04723,map04724,map04728,map04730,map05014,map05030,map05031,map05033,map05202 |
GOs | GO:0000149,GO:0001101,GO:0001508,GO:0001540,GO:0001664,GO:0001919,GO:0001965,GO:0003008,GO:0003674,GO:0004888,GO:0004970,GO:0004971,GO:0005102,GO:0005215,GO:0005216,GO:0005230,GO:0005231,GO:0005234,GO:0005261,GO:0005267,GO:0005272,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005793,GO:0005798,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006873,GO:0006874,GO:0006875,GO:0006888,GO:0006897,GO:0006898,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007215,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007417,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008021,GO:0008022,GO:0008066,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008179,GO:0008324,GO:0008328,GO:0009410,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010646,GO:0010647,GO:0010648,GO:0012505,GO:0012506,GO:0012507,GO:0014069,GO:0014070,GO:0014075,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015267,GO:0015276,GO:0015277,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0017022,GO:0019222,GO:0019226,GO:0019228,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0021510,GO:0022607,GO:0022803,GO:0022824,GO:0022834,GO:0022835,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030001,GO:0030003,GO:0030133,GO:0030134,GO:0030135,GO:0030139,GO:0030165,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030594,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030666,GO:0030672,GO:0031090,GO:0031224,GO:0031226,GO:0031252,GO:0031253,GO:0031256,GO:0031267,GO:0031323,GO:0031410,GO:0031489,GO:0031594,GO:0031623,GO:0031681,GO:0031690,GO:0031698,GO:0031982,GO:0031984,GO:0032279,GO:0032281,GO:0032355,GO:0032501,GO:0032502,GO:0032589,GO:0032590,GO:0032591,GO:0032838,GO:0032839,GO:0032870,GO:0032983,GO:0032991,GO:0033036,GO:0033116,GO:0033218,GO:0033267,GO:0033993,GO:0034220,GO:0034702,GO:0034703,GO:0034705,GO:0034706,GO:0035235,GO:0035249,GO:0035637,GO:0035725,GO:0036477,GO:0038023,GO:0042175,GO:0042220,GO:0042221,GO:0042277,GO:0042391,GO:0042493,GO:0042592,GO:0042734,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043025,GO:0043083,GO:0043112,GO:0043170,GO:0043195,GO:0043197,GO:0043198,GO:0043200,GO:0043204,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043279,GO:0043331,GO:0043434,GO:0043679,GO:0043933,GO:0044085,GO:0044237,GO:0044260,GO:0044297,GO:0044306,GO:0044308,GO:0044309,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0045211,GO:0045838,GO:0046677,GO:0046685,GO:0046873,GO:0046907,GO:0046983,GO:0048167,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050803,GO:0050804,GO:0050805,GO:0050806,GO:0050877,GO:0050890,GO:0050896,GO:0051018,GO:0051020,GO:0051117,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0051480,GO:0051602,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051966,GO:0051968,GO:0055037,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060076,GO:0060078,GO:0060079,GO:0060089,GO:0060255,GO:0060292,GO:0060359,GO:0060992,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0070848,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071359,GO:0071363,GO:0071375,GO:0071407,GO:0071417,GO:0071418,GO:0071495,GO:0071704,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0072347,GO:0072503,GO:0072507,GO:0090114,GO:0097060,GO:0097110,GO:0097447,GO:0097458,GO:0097708,GO:0098552,GO:0098588,GO:0098590,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098793,GO:0098794,GO:0098796,GO:0098797,GO:0098802,GO:0098805,GO:0098827,GO:0098839,GO:0098843,GO:0098878,GO:0098916,GO:0098936,GO:0098948,GO:0098960,GO:0098984,GO:0099055,GO:0099060,GO:0099061,GO:0099094,GO:0099146,GO:0099177,GO:0099240,GO:0099501,GO:0099503,GO:0099529,GO:0099536,GO:0099537,GO:0099565,GO:0099566,GO:0099568,GO:0099572,GO:0099583,GO:0099634,GO:0099699,GO:0120025,GO:0120038,GO:0120111,GO:0150034,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902495,GO:1904315,GO:1905114,GO:1990351 |
Evalue | 2.05e-06 |
EggNOG OGs | KOG1052@1|root,KOG1054@2759|Eukaryota,39MCC@33154|Opisthokonta,3CNZE@33208|Metazoa,3DEZ0@33213|Bilateria |
Description | glutamate receptor |
COG category | EPT |
BRITE | ko00000,ko00001,ko04040 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra1038.t1.stop1 | Ggra1038.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000027_pilon 863065..863067 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra1038.t1.start1 | Ggra1038.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000027_pilon 864838..864840 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra1038.t1 ID=Ggra1038.t1|Name=Ggra1038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=473bp MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWSCSSIHVFRGPNTT DFSAFVTSMHECTNKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPP FAYDRYVVFAHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILD RRFAVPSEYEPLPQTYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLS DETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMTASLVQESVETKFQT AADLLSCRIDPSEVCILRGGALETYWEKSIAVEECHEQNPPNYFNSYKTL FQAVEEGQCKYAIVLESAITSAIRQRYCGDFVIAGEPIWNGGLSMLLPKG SNLTETMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFAKLRRFF LIAYLVGGALFLAMVLIPQKNPGDGDEGRNRAVAVDGETFEAVMKTIEAV MKTMTRPESFSSTGGSHGDGAV* back to topspliced messenger RNA >Ggra1038.t1 ID=Ggra1038.t1|Name=Ggra1038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000027_pilon:863065..864840- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGAACCTCCCATCAGCTTTCAGAATGACCGCAATTACTGGAACAA TGGTTTGGACGGAGTCATAAAAGAGCATCTGCTTCAGCATCAAGCGTACC TCAATTGGTCGTGCTCATCGATTCACGTCTTTCGCGGCCCAAACACAACT GATTTCAGTGCTTTCGTCACATCCATGCATGAATGTACCAACAAATCAAC CGGGCAGATAATTGATTCCCCAGACTGCTCATGTGATATTGGCATTGGAG GTTGGTTTCAGACGGCAAGTCGTTTCGGACTTGTCGATTTCCTGCCTCCG TTTGCGTACGATCGATACGTCGTGTTTGCGCACGTTTCCGAGGCAACATT GTCAGGGAAGGTTTGGTTCTTCATTCAGACTTTCGACGGCTGGGCTTGGA TCTCGATTATGTCTCTGTTCGTTATGTTCTCGTTCCTGAAAATTCTCGAC CGGCGATTTGCTGTCCCTTCTGAGTATGAGCCGTTGCCACAAACGTATTC CAGACTTAAAAGGTGGGGACACTATCTCACGAAGAGCAATCTGCCTTTCC GACTGAGGAAGGGCATTCAAAGTACACTTATGAGAATGCTGATGCTCTCC GACGAGACTGTCGTTGATCACGGAAACACAACGCGTCAGTGGTTTCTTAA CCTCATTCTTGCAGTGACTGCGCTCTTTCTAGTCTTGTCGTACGAGGCTA GCATGACAGCCTCACTTGTACAAGAATCTGTTGAGACGAAGTTTCAAACA GCGGCAGATCTTCTGAGTTGCAGAATTGACCCTTCAGAAGTGTGTATACT GAGGGGAGGTGCTTTGGAGACGTATTGGGAGAAGTCTATCGCTGTGGAGG AATGCCATGAACAGAACCCACCAAACTATTTCAATTCTTACAAGACGTTA TTTCAAGCGGTTGAAGAGGGCCAGTGCAAGTATGCAATTGTGTTGGAGTC TGCCATTACATCCGCAATTCGGCAAAGGTATTGTGGCGACTTTGTGATCG CCGGCGAACCAATCTGGAACGGTGGGTTGTCAATGCTGCTGCCAAAAGGC AGCAATCTGACAGAAACGATGAGCCGTGCCACGCTTGAGCTACTGGGAAA TCAAACAACGACAAGCCTCATCAGGTACTTCAATAACCTGCCGCAGTGCA GGGCGGAAGTGAACACCACGCTGAGCTTCGCGAAGCTGCGCCGCTTCTTC CTGATCGCGTACTTAGTCGGGGGCGCCTTGTTCCTCGCGATGGTGCTCAT CCCCCAGAAGAACCCGGGCGACGGCGACGAGGGACGCAACCGAGCAGTGG CAGTCGACGGTGAAACGTTCGAAGCTGTGATGAAGACGATCGAAGCTGTG ATGAAGACGATGACGAGACCCGAGAGCTTCTCGTCAACAGGGGGCAGTCA CGGCGATGGCGCCGTTTGA back to topprotein sequence of Ggra1038.t1 >Ggra1038.t1 ID=Ggra1038.t1|Name=Ggra1038.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=473bp
MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWSCSSIHVFRGPNTT DFSAFVTSMHECTNKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPP FAYDRYVVFAHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILD RRFAVPSEYEPLPQTYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLS DETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMTASLVQESVETKFQT AADLLSCRIDPSEVCILRGGALETYWEKSIAVEECHEQNPPNYFNSYKTL FQAVEEGQCKYAIVLESAITSAIRQRYCGDFVIAGEPIWNGGLSMLLPKG SNLTETMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFAKLRRFF LIAYLVGGALFLAMVLIPQKNPGDGDEGRNRAVAVDGETFEAVMKTIEAV MKTMTRPESFSSTGGSHGDGAV* back to topmRNA from alignment at tig00000027_pilon:863065..864840- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra1038.t1 ID=Ggra1038.t1|Name=Ggra1038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000027_pilon:863065..864840- (Gracilaria gracilis GNS1m male) ATGGAGGAACCTCCCATCAGCTTTCAGAATGACCGCAATTACTGGAACGT
GCGTTATTCAAAGTCCTTGTCAATCGAAGAAGCCAATCATGCGTACTAAC
GATTTCCTACATCCTATGGTGACATACATTCAGAATGGTTTGGACGGAGT
CATAAAAGAGCATCTGCTTCAGCATCAAGCGTACCTCAATTGGTCGTGCT
CATCGATTCACGTCTTTCGCGGCCCAAACACAACTGATTTCAGTGCTTTC
GTCACATCCATGCATGAATGTACCAACAAATCAACCGGGCAGATAATTGA
TTCCCCAGACTGCTCATGTGATATTGGCATTGGAGGTTGGTTTCAGACGG
CAAGTCGTTTCGGACTTGTCGATTTCCTGCCTCCGTTTGCGTACGATCGA
TACGTCGTGTTTGCGCACGTTTCCGAGGCAACATTGTCAGGGAAGGTTTG
GTTCTTCATTCAGACTTTCGACGGCTGGGCTTGGATCTCGATTATGTCTC
TGTTCGTTATGTTCTCGTTCCTGAAAATTCTCGACCGGCGATTTGCTGTC
CCTTCTGAGTATGAGCCGTTGCCACAAACGTATTCCAGACTTAAAAGGTG
GGGACACTATCTCACGAAGAGCAATCTGCCTTTCCGACTGAGGAAGGGCA
TTCAAAGTACACGTAAGTTTCATTCTACTCTCCATGCGGTTCTGCGCGAA
AAAGTACACTGAAGACTGAGACCTTCATGCTACCCGCAATCGAAATCCAA
TACTCTTGAAGTTATGAGAATGCTGATGCTCTCCGACGAGACTGTCGTTG
ATCACGGAAACACAACGCGTCAGTGGTTTCTTAACCTCATTCTTGCAGTG
ACTGCGCTCTTTCTAGTCTTGTCGTACGAGGCTAGCATGACGTAAGTTGT
GCGCATTACTGATTGTCCCAACGTTCACAGCTGCGAGAATTCACTTTCCT
GACATCGATGCATTTACATTTCGTTCACTACTGCAGAGCCTCACTTGTAC
AAGAATCTGTTGAGACGAAGTTTCAAACAGCGGCAGATCTTCTGAGTTGC
AGAATTGACCCTTCAGAAGTGTGTATACTGAGGGGAGGTGCTTTGGAGAC
GTATTGGGAGAAGTCTATCGCTGTGGAGTAAGTTGCATCATGCCCCTTGT
TTCAAAGCTGCAACAGTTGTCTGACTTTGGGCAATTTGTGTCTACTCTAC
CGTAGGGAATGCCATGAACAGAACCCACCAAACTATTTCAATTCTTACAA
GACGTTATTTCAAGCGGTTGAAGAGGGCCAGTGCAAGTATGCAATTGTGT
TGGAGTCTGCCATTACATCCGCAATTCGGCAAAGGTATTGTGGCGACTTT
GTGATCGCCGGCGAACCAATCTGGAACGGTGGGTTGTCAATGCTGCTGCC
AAAAGGCAGCAATCTGACAGAAACGATGAGCCGTGCCACGCTTGAGCTAC
TGGGAAATCAAACAACGACAAGCCTCATCAGGTACTTCAATAACCTGCCG
CAGTGCAGGGCGGAAGTGAACACCACGCTGAGCTTCGCGAAGCTGCGCCG
CTTCTTCCTGATCGCGTACTTAGTCGGGGGCGCCTTGTTCCTCGCGATGG
TGCTCATCCCCCAGAAGAACCCGGGCGACGGCGACGAGGGACGCAACCGA
GCAGTGGCAGTCGACGGTGAAACGTTCGAAGCTGTGATGAAGACGATCGA
AGCTGTGATGAAGACGATGACGAGACCCGAGAGCTTCTCGTCAACAGGGG
GCAGTCACGGCGATGGCGCCGTTTGA back to topCoding sequence (CDS) from alignment at tig00000027_pilon:863065..864840- >Ggra1038.t1 ID=Ggra1038.t1|Name=Ggra1038.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1419bp|location=Sequence derived from alignment at tig00000027_pilon:863065..864840- (Gracilaria gracilis GNS1m male) ATGGAGGAACCTCCCATCAGCTTTCAGAATGACCGCAATTACTGGAACAA TGGTTTGGACGGAGTCATAAAAGAGCATCTGCTTCAGCATCAAGCGTACC TCAATTGGTCGTGCTCATCGATTCACGTCTTTCGCGGCCCAAACACAACT GATTTCAGTGCTTTCGTCACATCCATGCATGAATGTACCAACAAATCAAC CGGGCAGATAATTGATTCCCCAGACTGCTCATGTGATATTGGCATTGGAG GTTGGTTTCAGACGGCAAGTCGTTTCGGACTTGTCGATTTCCTGCCTCCG TTTGCGTACGATCGATACGTCGTGTTTGCGCACGTTTCCGAGGCAACATT GTCAGGGAAGGTTTGGTTCTTCATTCAGACTTTCGACGGCTGGGCTTGGA TCTCGATTATGTCTCTGTTCGTTATGTTCTCGTTCCTGAAAATTCTCGAC CGGCGATTTGCTGTCCCTTCTGAGTATGAGCCGTTGCCACAAACGTATTC CAGACTTAAAAGGTGGGGACACTATCTCACGAAGAGCAATCTGCCTTTCC GACTGAGGAAGGGCATTCAAAGTACACTTATGAGAATGCTGATGCTCTCC GACGAGACTGTCGTTGATCACGGAAACACAACGCGTCAGTGGTTTCTTAA CCTCATTCTTGCAGTGACTGCGCTCTTTCTAGTCTTGTCGTACGAGGCTA GCATGACAGCCTCACTTGTACAAGAATCTGTTGAGACGAAGTTTCAAACA GCGGCAGATCTTCTGAGTTGCAGAATTGACCCTTCAGAAGTGTGTATACT GAGGGGAGGTGCTTTGGAGACGTATTGGGAGAAGTCTATCGCTGTGGAGG AATGCCATGAACAGAACCCACCAAACTATTTCAATTCTTACAAGACGTTA TTTCAAGCGGTTGAAGAGGGCCAGTGCAAGTATGCAATTGTGTTGGAGTC TGCCATTACATCCGCAATTCGGCAAAGGTATTGTGGCGACTTTGTGATCG CCGGCGAACCAATCTGGAACGGTGGGTTGTCAATGCTGCTGCCAAAAGGC AGCAATCTGACAGAAACGATGAGCCGTGCCACGCTTGAGCTACTGGGAAA TCAAACAACGACAAGCCTCATCAGGTACTTCAATAACCTGCCGCAGTGCA GGGCGGAAGTGAACACCACGCTGAGCTTCGCGAAGCTGCGCCGCTTCTTC CTGATCGCGTACTTAGTCGGGGGCGCCTTGTTCCTCGCGATGGTGCTCAT CCCCCAGAAGAACCCGGGCGACGGCGACGAGGGACGCAACCGAGCAGTGG CAGTCGACGGTGAAACGTTCGAAGCTGTGATGAAGACGATCGAAGCTGTG ATGAAGACGATGACGAGACCCGAGAGCTTCTCGTCAACAGGGGGCAGTCA CGGCGATGGCGCCGTTTGA back to top
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