Ggra10379.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10379.t1
Unique NameGgra10379.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:124389..125014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10379Ggra10379Gracilaria gracilis GNS1m malegenetig00000108_pilon 124389..125014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10379.t1Ggra10379.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 124389..125014 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10379.t1.stop1Ggra10379.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 124389..124391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10379.t1.CDS1Ggra10379.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 124389..124789 -
Ggra10379.t1.CDS2Ggra10379.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 124840..125014 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10379.t1.exon1Ggra10379.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 124389..124789 -
Ggra10379.t1.exon2Ggra10379.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 124840..125014 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10379.t1.intron1Ggra10379.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 124790..124839 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10379.t1.start1Ggra10379.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 125012..125014 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10379.t1 ID=Ggra10379.t1|Name=Ggra10379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MQKPSKKKLDERFKCFLGSSREQNKRNKKSGGIAEEYSEKEILLDDVILE
IDKKAGAVCKMITEHALHQKGKRKRSNHDKSGSVSSSQQKRLCLADESPS
DDAITALIIEQSREQGKRESERFKGEQERLEVKRCRAARERERFEILKSE
AEKRIALHEKRLDLKMEERKQAIKERKHMLNIMAALSRKLQ*
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spliced messenger RNA

>Ggra10379.t1 ID=Ggra10379.t1|Name=Ggra10379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000108_pilon:124389..125014- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGCCCAGTAAGAAGAAGTTAGATGAACGATTTAAATGCTTCCT
AGGCTCTAGCAGAGAGCAAAACAAGCGCAACAAAAAGTCCGGTGGTATTG
CGGAAGAGTACTCCGAGAAGGAAATTCTCCTTGATGACGTCATATTGGAA
ATAGATAAGAAAGCTGGAGCTGTTTGCAAAATGATCACAGAGCATGCGTT
ACATCAAAAGGGGAAACGGAAACGAAGTAATCATGACAAGAGCGGTTCTG
TTTCTAGTTCGCAACAGAAGCGATTGTGTCTAGCAGATGAGTCACCTTCC
GATGATGCTATAACTGCATTAATAATAGAACAATCACGGGAACAAGGAAA
GCGCGAATCAGAGAGGTTTAAAGGGGAACAGGAAAGGTTAGAAGTGAAGA
GATGCAGAGCTGCGAGAGAACGTGAACGCTTTGAGATTCTTAAATCTGAA
GCCGAAAAAAGAATAGCTCTGCACGAGAAACGTCTTGATCTGAAAATGGA
AGAACGTAAGCAAGCTATAAAGGAAAGAAAACATATGTTGAACATTATGG
CTGCACTGAGTAGGAAGCTACAGTGA
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protein sequence of Ggra10379.t1

>Ggra10379.t1 ID=Ggra10379.t1|Name=Ggra10379.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MQKPSKKKLDERFKCFLGSSREQNKRNKKSGGIAEEYSEKEILLDDVILE
IDKKAGAVCKMITEHALHQKGKRKRSNHDKSGSVSSSQQKRLCLADESPS
DDAITALIIEQSREQGKRESERFKGEQERLEVKRCRAARERERFEILKSE
AEKRIALHEKRLDLKMEERKQAIKERKHMLNIMAALSRKLQ*
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mRNA from alignment at tig00000108_pilon:124389..125014-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10379.t1 ID=Ggra10379.t1|Name=Ggra10379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=626bp|location=Sequence derived from alignment at tig00000108_pilon:124389..125014- (Gracilaria gracilis GNS1m male)
ATGCAGAAGCCCAGTAAGAAGAAGTTAGATGAACGATTTAAATGCTTCCT
AGGCTCTAGCAGAGAGCAAAACAAGCGCAACAAAAAGTCCGGTGGTATTG
CGGAAGAGTACTCCGAGAAGGAAATTCTCCTTGATGACGTCATATTGGAA
ATAGATAAGAAAGCTGGAGCTGTTTGTAAGGAAAAAGCAGAACGTAAAGC
AAAAAAATTCGACTAATTGAAGCAGGCAAAATGATCACAGAGCATGCGTT
ACATCAAAAGGGGAAACGGAAACGAAGTAATCATGACAAGAGCGGTTCTG
TTTCTAGTTCGCAACAGAAGCGATTGTGTCTAGCAGATGAGTCACCTTCC
GATGATGCTATAACTGCATTAATAATAGAACAATCACGGGAACAAGGAAA
GCGCGAATCAGAGAGGTTTAAAGGGGAACAGGAAAGGTTAGAAGTGAAGA
GATGCAGAGCTGCGAGAGAACGTGAACGCTTTGAGATTCTTAAATCTGAA
GCCGAAAAAAGAATAGCTCTGCACGAGAAACGTCTTGATCTGAAAATGGA
AGAACGTAAGCAAGCTATAAAGGAAAGAAAACATATGTTGAACATTATGG
CTGCACTGAGTAGGAAGCTACAGTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:124389..125014-

>Ggra10379.t1 ID=Ggra10379.t1|Name=Ggra10379.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000108_pilon:124389..125014- (Gracilaria gracilis GNS1m male)
ATGCAGAAGCCCAGTAAGAAGAAGTTAGATGAACGATTTAAATGCTTCCT
AGGCTCTAGCAGAGAGCAAAACAAGCGCAACAAAAAGTCCGGTGGTATTG
CGGAAGAGTACTCCGAGAAGGAAATTCTCCTTGATGACGTCATATTGGAA
ATAGATAAGAAAGCTGGAGCTGTTTGCAAAATGATCACAGAGCATGCGTT
ACATCAAAAGGGGAAACGGAAACGAAGTAATCATGACAAGAGCGGTTCTG
TTTCTAGTTCGCAACAGAAGCGATTGTGTCTAGCAGATGAGTCACCTTCC
GATGATGCTATAACTGCATTAATAATAGAACAATCACGGGAACAAGGAAA
GCGCGAATCAGAGAGGTTTAAAGGGGAACAGGAAAGGTTAGAAGTGAAGA
GATGCAGAGCTGCGAGAGAACGTGAACGCTTTGAGATTCTTAAATCTGAA
GCCGAAAAAAGAATAGCTCTGCACGAGAAACGTCTTGATCTGAAAATGGA
AGAACGTAAGCAAGCTATAAAGGAAAGAAAACATATGTTGAACATTATGG
CTGCACTGAGTAGGAAGCTACAGTGA
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