Ggra10378.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10378.t1
Unique NameGgra10378.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:113158..114180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001743357.1
Max annot lvl33154|Opisthokonta
Evalue1.83e-27
EggNOG OGs2APRF@1|root,2RZH9@2759|Eukaryota,3A1WH@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10378Ggra10378Gracilaria gracilis GNS1m malegenetig00000108_pilon 113158..114180 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10378.t1.stop1Ggra10378.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 113158..113160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10378.t1.CDS1Ggra10378.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 113158..114180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10378.t1.exon1Ggra10378.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 113158..114180 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10378.t1.start1Ggra10378.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 114178..114180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10378.t1Ggra10378.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 113158..114180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10378.t1 ID=Ggra10378.t1|Name=Ggra10378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MEDAAIDFVQLQADDLATIEPAEIAQILCPEEPQQEATQSEPNLPQSNLL
SSTNDDVSSTLAQNARTHFEKQTVHCQCKPPCTTEAHFTLAKSFAAMKED
ERATSVRAILLALSAPTGTANELMQWNSDWSQQRKRKRRLIEDEGKNTNR
FALRGKRMCQYGFAATVQLHHRTIARFAADVCSSDTCSVTQSEHSKGRKG
KQSLQTIVASAQLHRYADMNALCCPTGRGSIDDNPIQFLPNDVRKEDVYK
QYKKQWGEIMSAAKENMGYTSENAPEAPLTKESFVKVWRKYVPTLHILKK
GSDFCDTCTTSLNSARSTQNLELRSPLLASRRKHRNDAIQ*
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spliced messenger RNA

>Ggra10378.t1 ID=Ggra10378.t1|Name=Ggra10378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000108_pilon:113158..114180- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATGCTGCAATTGACTTTGTACAGCTCCAAGCTGATGATCTCGC
CACCATTGAGCCTGCAGAGATTGCTCAAATACTATGCCCAGAAGAGCCGC
AACAAGAGGCGACGCAAAGTGAGCCAAACCTTCCACAGTCCAACCTGCTC
AGCAGCACCAATGACGACGTTAGCTCAACGTTGGCGCAAAATGCTCGGAC
TCATTTCGAAAAACAAACAGTTCACTGCCAATGTAAGCCCCCTTGCACAA
CTGAAGCCCACTTTACGCTTGCCAAAAGCTTCGCAGCCATGAAGGAGGAC
GAAAGGGCAACGTCTGTGCGCGCTATATTGCTGGCATTATCGGCCCCTAC
TGGAACAGCGAATGAACTGATGCAATGGAACTCTGATTGGTCGCAACAAC
GTAAGCGTAAGCGCCGGCTGATTGAAGATGAAGGGAAGAATACCAACCGT
TTTGCACTTCGTGGCAAAAGGATGTGCCAATACGGATTTGCTGCAACAGT
ACAGCTACATCATAGGACTATTGCAAGATTTGCCGCCGATGTATGCAGCA
GTGATACGTGTTCAGTCACACAAAGTGAGCACTCCAAAGGCCGGAAAGGA
AAACAGTCGCTGCAAACTATTGTTGCCTCGGCCCAACTCCACCGATATGC
CGATATGAATGCGCTTTGCTGCCCAACGGGGCGGGGATCCATAGACGATA
ATCCAATCCAGTTTCTCCCAAACGACGTTCGAAAAGAAGATGTCTATAAG
CAATACAAGAAGCAATGGGGTGAAATTATGTCTGCAGCAAAGGAAAACAT
GGGATACACCTCGGAGAATGCACCCGAAGCTCCTTTGACCAAGGAGAGCT
TTGTCAAAGTTTGGCGAAAGTATGTTCCGACGCTGCACATTCTTAAGAAA
GGAAGTGATTTTTGCGATACTTGTACGACTTCGCTCAATTCCGCTCGGTC
AACACAGAATTTGGAGCTTCGTTCGCCCTTACTGGCATCCAGACGGAAGC
ACCGTAATGATGCAATACAATGA
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protein sequence of Ggra10378.t1

>Ggra10378.t1 ID=Ggra10378.t1|Name=Ggra10378.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MEDAAIDFVQLQADDLATIEPAEIAQILCPEEPQQEATQSEPNLPQSNLL
SSTNDDVSSTLAQNARTHFEKQTVHCQCKPPCTTEAHFTLAKSFAAMKED
ERATSVRAILLALSAPTGTANELMQWNSDWSQQRKRKRRLIEDEGKNTNR
FALRGKRMCQYGFAATVQLHHRTIARFAADVCSSDTCSVTQSEHSKGRKG
KQSLQTIVASAQLHRYADMNALCCPTGRGSIDDNPIQFLPNDVRKEDVYK
QYKKQWGEIMSAAKENMGYTSENAPEAPLTKESFVKVWRKYVPTLHILKK
GSDFCDTCTTSLNSARSTQNLELRSPLLASRRKHRNDAIQ*
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mRNA from alignment at tig00000108_pilon:113158..114180-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10378.t1 ID=Ggra10378.t1|Name=Ggra10378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000108_pilon:113158..114180- (Gracilaria gracilis GNS1m male)
ATGGAAGATGCTGCAATTGACTTTGTACAGCTCCAAGCTGATGATCTCGC
CACCATTGAGCCTGCAGAGATTGCTCAAATACTATGCCCAGAAGAGCCGC
AACAAGAGGCGACGCAAAGTGAGCCAAACCTTCCACAGTCCAACCTGCTC
AGCAGCACCAATGACGACGTTAGCTCAACGTTGGCGCAAAATGCTCGGAC
TCATTTCGAAAAACAAACAGTTCACTGCCAATGTAAGCCCCCTTGCACAA
CTGAAGCCCACTTTACGCTTGCCAAAAGCTTCGCAGCCATGAAGGAGGAC
GAAAGGGCAACGTCTGTGCGCGCTATATTGCTGGCATTATCGGCCCCTAC
TGGAACAGCGAATGAACTGATGCAATGGAACTCTGATTGGTCGCAACAAC
GTAAGCGTAAGCGCCGGCTGATTGAAGATGAAGGGAAGAATACCAACCGT
TTTGCACTTCGTGGCAAAAGGATGTGCCAATACGGATTTGCTGCAACAGT
ACAGCTACATCATAGGACTATTGCAAGATTTGCCGCCGATGTATGCAGCA
GTGATACGTGTTCAGTCACACAAAGTGAGCACTCCAAAGGCCGGAAAGGA
AAACAGTCGCTGCAAACTATTGTTGCCTCGGCCCAACTCCACCGATATGC
CGATATGAATGCGCTTTGCTGCCCAACGGGGCGGGGATCCATAGACGATA
ATCCAATCCAGTTTCTCCCAAACGACGTTCGAAAAGAAGATGTCTATAAG
CAATACAAGAAGCAATGGGGTGAAATTATGTCTGCAGCAAAGGAAAACAT
GGGATACACCTCGGAGAATGCACCCGAAGCTCCTTTGACCAAGGAGAGCT
TTGTCAAAGTTTGGCGAAAGTATGTTCCGACGCTGCACATTCTTAAGAAA
GGAAGTGATTTTTGCGATACTTGTACGACTTCGCTCAATTCCGCTCGGTC
AACACAGAATTTGGAGCTTCGTTCGCCCTTACTGGCATCCAGACGGAAGC
ACCGTAATGATGCAATACAATGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:113158..114180-

>Ggra10378.t1 ID=Ggra10378.t1|Name=Ggra10378.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000108_pilon:113158..114180- (Gracilaria gracilis GNS1m male)
ATGGAAGATGCTGCAATTGACTTTGTACAGCTCCAAGCTGATGATCTCGC
CACCATTGAGCCTGCAGAGATTGCTCAAATACTATGCCCAGAAGAGCCGC
AACAAGAGGCGACGCAAAGTGAGCCAAACCTTCCACAGTCCAACCTGCTC
AGCAGCACCAATGACGACGTTAGCTCAACGTTGGCGCAAAATGCTCGGAC
TCATTTCGAAAAACAAACAGTTCACTGCCAATGTAAGCCCCCTTGCACAA
CTGAAGCCCACTTTACGCTTGCCAAAAGCTTCGCAGCCATGAAGGAGGAC
GAAAGGGCAACGTCTGTGCGCGCTATATTGCTGGCATTATCGGCCCCTAC
TGGAACAGCGAATGAACTGATGCAATGGAACTCTGATTGGTCGCAACAAC
GTAAGCGTAAGCGCCGGCTGATTGAAGATGAAGGGAAGAATACCAACCGT
TTTGCACTTCGTGGCAAAAGGATGTGCCAATACGGATTTGCTGCAACAGT
ACAGCTACATCATAGGACTATTGCAAGATTTGCCGCCGATGTATGCAGCA
GTGATACGTGTTCAGTCACACAAAGTGAGCACTCCAAAGGCCGGAAAGGA
AAACAGTCGCTGCAAACTATTGTTGCCTCGGCCCAACTCCACCGATATGC
CGATATGAATGCGCTTTGCTGCCCAACGGGGCGGGGATCCATAGACGATA
ATCCAATCCAGTTTCTCCCAAACGACGTTCGAAAAGAAGATGTCTATAAG
CAATACAAGAAGCAATGGGGTGAAATTATGTCTGCAGCAAAGGAAAACAT
GGGATACACCTCGGAGAATGCACCCGAAGCTCCTTTGACCAAGGAGAGCT
TTGTCAAAGTTTGGCGAAAGTATGTTCCGACGCTGCACATTCTTAAGAAA
GGAAGTGATTTTTGCGATACTTGTACGACTTCGCTCAATTCCGCTCGGTC
AACACAGAATTTGGAGCTTCGTTCGCCCTTACTGGCATCCAGACGGAAGC
ACCGTAATGATGCAATACAATGA
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