Ggra10377.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10377.t1
Unique NameGgra10377.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:64600..65802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog558152.IQ37_16525
PFAMsLactamase_B
Max annot lvl976|Bacteroidetes
Evalue2.32e-27
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria,4NN7N@976|Bacteroidetes,1I1A6@117743|Flavobacteriia,3ZQZD@59732|Chryseobacterium
DescriptionMetallo-beta-lactamase superfamily
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10377Ggra10377Gracilaria gracilis GNS1m malegenetig00000108_pilon 64600..65802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10377.t1Ggra10377.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 64600..65802 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10377.t1.stop1Ggra10377.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 64600..64602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10377.t1.CDS1Ggra10377.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 64600..64852 -
Ggra10377.t1.CDS2Ggra10377.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 65011..65149 -
Ggra10377.t1.CDS3Ggra10377.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000108_pilon 65235..65802 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10377.t1.exon1Ggra10377.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 64600..64852 -
Ggra10377.t1.exon2Ggra10377.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 65011..65149 -
Ggra10377.t1.exon3Ggra10377.t1.exon3Gracilaria gracilis GNS1m maleexontig00000108_pilon 65235..65802 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10377.t1.intron1Ggra10377.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 64853..65010 -
Ggra10377.t1.intron2Ggra10377.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000108_pilon 65150..65234 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10377.t1.start1Ggra10377.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 65800..65802 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10377.t1 ID=Ggra10377.t1|Name=Ggra10377.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MKYLKIFVLTVICFMWQTKATSSTCTLNSTIYSFKLASLNCTVVSDGPVE
FNINLFSIPDAALFRSYKKNFRDINPILIGENVLVVDLPAARALFDTGSF
LVSEKLPQFPLFENGGQLMRNLRAAPIWPSSIDFVFLTHGHADHVAGIVT
EDDKRAFPNADVFVGLVEHEFWSNPAPTAPGSLVSESDLAEFAKVYRDAV
APYERTAWLHLVDSENEEKASPVEGVRFINIRTYTGLTGWVIQVNQLQNP
EWGFFSESNRTEAYLSRERLITDVANTETLVVSYHENFPGLGFVQERGPF
FEWLPKAPQQLGIGVKRMC*
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spliced messenger RNA

>Ggra10377.t1 ID=Ggra10377.t1|Name=Ggra10377.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000108_pilon:64600..65802- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTACTTGAAGATCTTTGTTTTGACTGTTATTTGTTTTATGTGGCA
AACCAAGGCCACCTCTTCTACATGCACTCTCAATTCCACAATCTACAGTT
TCAAGTTGGCATCTCTGAACTGCACAGTCGTTTCAGACGGACCTGTTGAG
TTCAACATTAATCTTTTCTCGATTCCGGACGCCGCCCTGTTTCGTTCTTA
CAAGAAGAATTTCCGCGACATCAATCCTATTCTTATCGGGGAAAATGTGC
TCGTAGTAGATCTGCCTGCTGCAAGAGCACTGTTCGACACAGGTTCCTTT
CTGGTTTCGGAAAAATTACCGCAGTTTCCATTGTTCGAAAATGGAGGTCA
ACTGATGCGCAATCTTCGCGCTGCTCCTATTTGGCCGTCATCAATTGATT
TCGTGTTCTTAACCCATGGGCACGCAGACCATGTGGCCGGTATTGTGACA
GAGGATGACAAACGTGCGTTTCCAAATGCAGACGTATTCGTGGGACTTGT
GGAGCACGAGTTTTGGTCAAATCCGGCTCCGACCGCGCCGGGATCTTTGG
TTAGCGAAAGTGATCTTGCTGAGTTTGCCAAGGTTTACCGGGATGCAGTA
GCACCATATGAGCGAACTGCGTGGCTGCATCTAGTGGATTCTGAAAACGA
AGAGAAGGCATCGCCTGTGGAAGGAGTTCGATTCATCAACATCCGGACAT
ACACCGGGTTGACGGGGTGGGTGATACAGGTGAATCAATTACAAAATCCG
GAATGGGGCTTCTTCTCAGAAAGCAATCGCACAGAGGCTTACCTCTCGCG
CGAAAGGCTTATAACGGACGTGGCCAACACGGAGACTTTAGTGGTGTCGT
ACCATGAGAATTTCCCGGGACTGGGGTTTGTGCAGGAGCGAGGACCATTC
TTTGAGTGGTTGCCGAAGGCGCCTCAGCAGCTGGGAATTGGCGTGAAACG
AATGTGCTGA
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protein sequence of Ggra10377.t1

>Ggra10377.t1 ID=Ggra10377.t1|Name=Ggra10377.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MKYLKIFVLTVICFMWQTKATSSTCTLNSTIYSFKLASLNCTVVSDGPVE
FNINLFSIPDAALFRSYKKNFRDINPILIGENVLVVDLPAARALFDTGSF
LVSEKLPQFPLFENGGQLMRNLRAAPIWPSSIDFVFLTHGHADHVAGIVT
EDDKRAFPNADVFVGLVEHEFWSNPAPTAPGSLVSESDLAEFAKVYRDAV
APYERTAWLHLVDSENEEKASPVEGVRFINIRTYTGLTGWVIQVNQLQNP
EWGFFSESNRTEAYLSRERLITDVANTETLVVSYHENFPGLGFVQERGPF
FEWLPKAPQQLGIGVKRMC*
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mRNA from alignment at tig00000108_pilon:64600..65802-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10377.t1 ID=Ggra10377.t1|Name=Ggra10377.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000108_pilon:64600..65802- (Gracilaria gracilis GNS1m male)
ATGAAGTACTTGAAGATCTTTGTTTTGACTGTTATTTGTTTTATGTGGCA
AACCAAGGCCACCTCTTCTACATGCACTCTCAATTCCACAATCTACAGTT
TCAAGTTGGCATCTCTGAACTGCACAGTCGTTTCAGACGGACCTGTTGAG
TTCAACATTAATCTTTTCTCGATTCCGGACGCCGCCCTGTTTCGTTCTTA
CAAGAAGAATTTCCGCGACATCAATCCTATTCTTATCGGGGAAAATGTGC
TCGTAGTAGATCTGCCTGCTGCAAGAGCACTGTTCGACACAGGTTCCTTT
CTGGTTTCGGAAAAATTACCGCAGTTTCCATTGTTCGAAAATGGAGGTCA
ACTGATGCGCAATCTTCGCGCTGCTCCTATTTGGCCGTCATCAATTGATT
TCGTGTTCTTAACCCATGGGCACGCAGACCATGTGGCCGGTATTGTGACA
GAGGATGACAAACGTGCGTTTCCAAATGCAGACGTATTCGTGGGACTTGT
GGAGCACGAGTTTTGGTCAAATCCGGCTCCGACCGCGCCGGGATCTTTGG
TTAGCGAAAGTGATCTTGGTAAGTTGAATCATATCAAGTTATGAAGTGAC
GTCCTTCCACATACGTATTGTTTACTAATGTGTACCTGTTTGGTGTGTGT
TAGCTGAGTTTGCCAAGGTTTACCGGGATGCAGTAGCACCATATGAGCGA
ACTGCGTGGCTGCATCTAGTGGATTCTGAAAACGAAGAGAAGGCATCGCC
TGTGGAAGGAGTTCGATTCATCAACATCCGGACATACACCGGGTCATTGC
TCGATTGAAGTGAAACAGGGCGGTGAAAGAATGATTTTCACTGGCGATGC
GTGGATCACAGTGGTAAGTTAAAGCACTTTTTCGTGATGAAGATGATGGG
CCTGGCTATTGATATCTATAACTAACGTGGCTACGTACCGCTAATTTTAG
GTTGACGGGGTGGGTGATACAGGTGAATCAATTACAAAATCCGGAATGGG
GCTTCTTCTCAGAAAGCAATCGCACAGAGGCTTACCTCTCGCGCGAAAGG
CTTATAACGGACGTGGCCAACACGGAGACTTTAGTGGTGTCGTACCATGA
GAATTTCCCGGGACTGGGGTTTGTGCAGGAGCGAGGACCATTCTTTGAGT
GGTTGCCGAAGGCGCCTCAGCAGCTGGGAATTGGCGTGAAACGAATGTGC
TGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:64600..65802-

>Ggra10377.t1 ID=Ggra10377.t1|Name=Ggra10377.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000108_pilon:64600..65802- (Gracilaria gracilis GNS1m male)
ATGAAGTACTTGAAGATCTTTGTTTTGACTGTTATTTGTTTTATGTGGCA
AACCAAGGCCACCTCTTCTACATGCACTCTCAATTCCACAATCTACAGTT
TCAAGTTGGCATCTCTGAACTGCACAGTCGTTTCAGACGGACCTGTTGAG
TTCAACATTAATCTTTTCTCGATTCCGGACGCCGCCCTGTTTCGTTCTTA
CAAGAAGAATTTCCGCGACATCAATCCTATTCTTATCGGGGAAAATGTGC
TCGTAGTAGATCTGCCTGCTGCAAGAGCACTGTTCGACACAGGTTCCTTT
CTGGTTTCGGAAAAATTACCGCAGTTTCCATTGTTCGAAAATGGAGGTCA
ACTGATGCGCAATCTTCGCGCTGCTCCTATTTGGCCGTCATCAATTGATT
TCGTGTTCTTAACCCATGGGCACGCAGACCATGTGGCCGGTATTGTGACA
GAGGATGACAAACGTGCGTTTCCAAATGCAGACGTATTCGTGGGACTTGT
GGAGCACGAGTTTTGGTCAAATCCGGCTCCGACCGCGCCGGGATCTTTGG
TTAGCGAAAGTGATCTTGCTGAGTTTGCCAAGGTTTACCGGGATGCAGTA
GCACCATATGAGCGAACTGCGTGGCTGCATCTAGTGGATTCTGAAAACGA
AGAGAAGGCATCGCCTGTGGAAGGAGTTCGATTCATCAACATCCGGACAT
ACACCGGGTTGACGGGGTGGGTGATACAGGTGAATCAATTACAAAATCCG
GAATGGGGCTTCTTCTCAGAAAGCAATCGCACAGAGGCTTACCTCTCGCG
CGAAAGGCTTATAACGGACGTGGCCAACACGGAGACTTTAGTGGTGTCGT
ACCATGAGAATTTCCCGGGACTGGGGTTTGTGCAGGAGCGAGGACCATTC
TTTGAGTGGTTGCCGAAGGCGCCTCAGCAGCTGGGAATTGGCGTGAAACG
AATGTGCTGA
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