Ggra10376.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10376.t1
Unique NameGgra10376.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:63573..63905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH144CT
Preferred nameSBE1
PFAMsAlpha-amylase,Alpha-amylase_C,CBM_48
Max annot lvl2759|Eukaryota
KEGG koko:K00700
KEGG ReactionR02110
KEGG Pathwayko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG ModuleM00565
GOsGO:0000271,GO:0001678,GO:0003674,GO:0003824,GO:0003844,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009314,GO:0009416,GO:0009501,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009750,GO:0009987,GO:0010021,GO:0010033,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019725,GO:0033500,GO:0033692,GO:0034284,GO:0034285,GO:0034637,GO:0034645,GO:0042221,GO:0042592,GO:0042593,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048878,GO:0050896,GO:0051716,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071214,GO:0071310,GO:0071322,GO:0071324,GO:0071326,GO:0071329,GO:0071331,GO:0071332,GO:0071333,GO:0071478,GO:0071482,GO:0071704,GO:0104004,GO:1901135,GO:1901137,GO:1901576,GO:1901700,GO:1901701,GO:2000896
Evalue1.29e-15
EggNOG OGsCOG0296@1|root,KOG0470@2759|Eukaryota
EC2.4.1.18
Description1,4-alpha-glucan branching enzyme activity
COG categoryG
CAZyCBM48,GH13
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10376Ggra10376Gracilaria gracilis GNS1m malegenetig00000108_pilon 63573..63905 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10376.t1.stop1Ggra10376.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 63573..63575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10376.t1.CDS1Ggra10376.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 63573..63905 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10376.t1.exon1Ggra10376.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 63573..63905 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10376.t1.start1Ggra10376.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 63903..63905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10376.t1Ggra10376.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 63573..63905 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10376.t1 ID=Ggra10376.t1|Name=Ggra10376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=111bp
MGSTDPHYDAWKDNKDGTACVHDDRYLEPFADALRYRYAKYSEIMSGSKV
KAVVVPHQGPWLDRNPAWATFCVQDPNTFLYDTMFWDPPEKFKWTSPDHV
KRPESLRIYE*
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spliced messenger RNA

>Ggra10376.t1 ID=Ggra10376.t1|Name=Ggra10376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00000108_pilon:63573..63905- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCTACCGACCCTCATTACGACGCCTGGAAGGACAACAAAGATGG
CACCGCCTGCGTTCACGATGACCGCTATCTAGAGCCGTTTGCAGACGCCT
TGCGATACCGCTATGCAAAGTATTCGGAGATCATGTCTGGCTCAAAGGTC
AAGGCTGTCGTCGTCCCGCATCAAGGGCCCTGGCTTGATCGCAATCCCGC
CTGGGCCACCTTCTGCGTTCAAGACCCTAACACTTTTCTGTACGATACTA
TGTTTTGGGACCCTCCGGAGAAGTTCAAATGGACTTCACCGGATCACGTC
AAGCGCCCGGAGTCGCTGCGCATCTATGAATGA
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protein sequence of Ggra10376.t1

>Ggra10376.t1 ID=Ggra10376.t1|Name=Ggra10376.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=111bp
MGSTDPHYDAWKDNKDGTACVHDDRYLEPFADALRYRYAKYSEIMSGSKV
KAVVVPHQGPWLDRNPAWATFCVQDPNTFLYDTMFWDPPEKFKWTSPDHV
KRPESLRIYE*
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mRNA from alignment at tig00000108_pilon:63573..63905-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10376.t1 ID=Ggra10376.t1|Name=Ggra10376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00000108_pilon:63573..63905- (Gracilaria gracilis GNS1m male)
ATGGGGTCTACCGACCCTCATTACGACGCCTGGAAGGACAACAAAGATGG
CACCGCCTGCGTTCACGATGACCGCTATCTAGAGCCGTTTGCAGACGCCT
TGCGATACCGCTATGCAAAGTATTCGGAGATCATGTCTGGCTCAAAGGTC
AAGGCTGTCGTCGTCCCGCATCAAGGGCCCTGGCTTGATCGCAATCCCGC
CTGGGCCACCTTCTGCGTTCAAGACCCTAACACTTTTCTGTACGATACTA
TGTTTTGGGACCCTCCGGAGAAGTTCAAATGGACTTCACCGGATCACGTC
AAGCGCCCGGAGTCGCTGCGCATCTATGAATGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:63573..63905-

>Ggra10376.t1 ID=Ggra10376.t1|Name=Ggra10376.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=333bp|location=Sequence derived from alignment at tig00000108_pilon:63573..63905- (Gracilaria gracilis GNS1m male)
ATGGGGTCTACCGACCCTCATTACGACGCCTGGAAGGACAACAAAGATGG
CACCGCCTGCGTTCACGATGACCGCTATCTAGAGCCGTTTGCAGACGCCT
TGCGATACCGCTATGCAAAGTATTCGGAGATCATGTCTGGCTCAAAGGTC
AAGGCTGTCGTCGTCCCGCATCAAGGGCCCTGGCTTGATCGCAATCCCGC
CTGGGCCACCTTCTGCGTTCAAGACCCTAACACTTTTCTGTACGATACTA
TGTTTTGGGACCCTCCGGAGAAGTTCAAATGGACTTCACCGGATCACGTC
AAGCGCCCGGAGTCGCTGCGCATCTATGAATGA
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