Ggra10374.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10374.t1
Unique NameGgra10374.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:60117..61284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704904.1
PFAMsADH_N,ADH_zinc_N
Max annot lvl2759|Eukaryota
Evalue9.13e-71
EggNOG OGsCOG1063@1|root,KOG0024@2759|Eukaryota
DescriptionL-arabinose catabolic process
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10374Ggra10374Gracilaria gracilis GNS1m malegenetig00000108_pilon 60117..61284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10374.t1Ggra10374.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 60117..61284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10374.t1.stop1Ggra10374.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 60117..60119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10374.t1.CDS1Ggra10374.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 60117..60693 -
Ggra10374.t1.CDS2Ggra10374.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 61106..61284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10374.t1.exon1Ggra10374.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 60117..60693 -
Ggra10374.t1.exon2Ggra10374.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 61106..61284 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10374.t1.intron1Ggra10374.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 60694..61105 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10374.t1.start1Ggra10374.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 61282..61284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10374.t1 ID=Ggra10374.t1|Name=Ggra10374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MSVRDTIVLETMSAVLCSGIKDYKAKQIDVPDLLPGELLLRVTRCGVCAG
DAKCYAGAPIFERPDIALGDVAVINRCSPIGLGMVAAARLRGFSRLIAVD
LDDTRLEIARECGADILLNPTRDNVVQTVRDITSGNGCDVYLEAAGAPSS
VIQGVHCCRKAATMVEFSVFRKATTVDWTIIGDTKELLIKGGHCSGDRGY
SNAIDLLKRGLLPTERIVSHSYPHGEVVEAIGMVIDGSKSVKVTVDLHAE
W*
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spliced messenger RNA

>Ggra10374.t1 ID=Ggra10374.t1|Name=Ggra10374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000108_pilon:60117..61284- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTGCGCGACACCATTGTGCTCGAGACCATGAGTGCTGTGCTGTG
CAGCGGCATCAAGGACTACAAGGCGAAACAGATTGATGTCCCAGACCTGC
TGCCTGGAGAGCTTCTGCTTCGCGTTACGCGATGTGGTGTATGTGCTGGG
GATGCGAAATGTTATGCTGGAGCACCTATTTTCGAACGGCCTGATATTGC
TTTGGGAGATGTTGCAGTCATTAATCGGTGCAGTCCAATTGGTTTGGGTA
TGGTGGCTGCAGCACGTCTCCGTGGTTTTTCTCGGCTTATAGCGGTCGAC
CTTGACGACACGCGTCTCGAAATTGCTCGTGAATGCGGCGCTGATATCTT
GCTTAATCCGACGAGAGATAATGTTGTGCAAACGGTGAGGGACATAACTT
CAGGAAATGGATGTGATGTGTACTTGGAAGCAGCTGGTGCTCCTTCCAGT
GTGATACAGGGTGTACATTGTTGTCGGAAAGCAGCGACGATGGTAGAGTT
TTCTGTTTTTAGGAAAGCCACCACCGTGGACTGGACTATCATCGGAGATA
CCAAAGAACTTCTTATAAAGGGTGGCCATTGCTCGGGAGATCGAGGGTAT
TCAAATGCAATTGATTTGTTGAAGAGGGGTCTCTTGCCCACTGAGCGAAT
TGTATCTCACTCGTACCCCCATGGTGAGGTCGTGGAAGCCATTGGCATGG
TCATTGATGGTTCCAAATCTGTGAAAGTTACGGTCGATCTGCATGCGGAA
TGGTAA
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protein sequence of Ggra10374.t1

>Ggra10374.t1 ID=Ggra10374.t1|Name=Ggra10374.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MSVRDTIVLETMSAVLCSGIKDYKAKQIDVPDLLPGELLLRVTRCGVCAG
DAKCYAGAPIFERPDIALGDVAVINRCSPIGLGMVAAARLRGFSRLIAVD
LDDTRLEIARECGADILLNPTRDNVVQTVRDITSGNGCDVYLEAAGAPSS
VIQGVHCCRKAATMVEFSVFRKATTVDWTIIGDTKELLIKGGHCSGDRGY
SNAIDLLKRGLLPTERIVSHSYPHGEVVEAIGMVIDGSKSVKVTVDLHAE
W*
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mRNA from alignment at tig00000108_pilon:60117..61284-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10374.t1 ID=Ggra10374.t1|Name=Ggra10374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1168bp|location=Sequence derived from alignment at tig00000108_pilon:60117..61284- (Gracilaria gracilis GNS1m male)
ATGAGCGTGCGCGACACCATTGTGCTCGAGACCATGAGTGCTGTGCTGTG
CAGCGGCATCAAGGACTACAAGGCGAAACAGATTGATGTCCCAGACCTGC
TGCCTGGAGAGCTTCTGCTTCGCGTTACGCGATGTGGTGTATGTGCTGGG
GATGCGAAATGTTATGCTGGAGCACCTATGTACGTTGGAATATCTTGTCC
AGGATAGTAGTCTACACAGTTTTCATGCGTTTCTCTAACCACAACATTAG
GTTTTGGGGGTGATGATACACGTCCAGCGAACGTACAAACGCCGGTGATC
CCGGGGCATGAATTCTGCGGCGAGGTGCCTGTATGCAAGAGAGAAGGTGT
TGATGTCGGCCAATACGTGACGGCTGAGCAAGTCATGGCAATGCAACGAA
TGCTTCTATTGCAAGAAAGGTTTGCGGTGGCTATGCGCTCTTCATGATAT
ATTCCGCTTCCATAACAATGTTCATGGTGGTATGGCACAGTTCATGAAGA
TTCTATCCAAGGCTACAGCTCACATATTCGCAAACTCTTTAAACACTGCT
GATATGGTACACACAGAACCTCTCAGCTGTTCCGTGCATAGTTTCGAACG
GCCTGATATTGCTTTGGGAGATGTTGCAGTCATTAATCGGTGCAGTCCAA
TTGGTTTGGGTATGGTGGCTGCAGCACGTCTCCGTGGTTTTTCTCGGCTT
ATAGCGGTCGACCTTGACGACACGCGTCTCGAAATTGCTCGTGAATGCGG
CGCTGATATCTTGCTTAATCCGACGAGAGATAATGTTGTGCAAACGGTGA
GGGACATAACTTCAGGAAATGGATGTGATGTGTACTTGGAAGCAGCTGGT
GCTCCTTCCAGTGTGATACAGGGTGTACATTGTTGTCGGAAAGCAGCGAC
GATGGTAGAGTTTTCTGTTTTTAGGAAAGCCACCACCGTGGACTGGACTA
TCATCGGAGATACCAAAGAACTTCTTATAAAGGGTGGCCATTGCTCGGGA
GATCGAGGGTATTCAAATGCAATTGATTTGTTGAAGAGGGGTCTCTTGCC
CACTGAGCGAATTGTATCTCACTCGTACCCCCATGGTGAGGTCGTGGAAG
CCATTGGCATGGTCATTGATGGTTCCAAATCTGTGAAAGTTACGGTCGAT
CTGCATGCGGAATGGTAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:60117..61284-

>Ggra10374.t1 ID=Ggra10374.t1|Name=Ggra10374.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000108_pilon:60117..61284- (Gracilaria gracilis GNS1m male)
ATGAGCGTGCGCGACACCATTGTGCTCGAGACCATGAGTGCTGTGCTGTG
CAGCGGCATCAAGGACTACAAGGCGAAACAGATTGATGTCCCAGACCTGC
TGCCTGGAGAGCTTCTGCTTCGCGTTACGCGATGTGGTGTATGTGCTGGG
GATGCGAAATGTTATGCTGGAGCACCTATTTTCGAACGGCCTGATATTGC
TTTGGGAGATGTTGCAGTCATTAATCGGTGCAGTCCAATTGGTTTGGGTA
TGGTGGCTGCAGCACGTCTCCGTGGTTTTTCTCGGCTTATAGCGGTCGAC
CTTGACGACACGCGTCTCGAAATTGCTCGTGAATGCGGCGCTGATATCTT
GCTTAATCCGACGAGAGATAATGTTGTGCAAACGGTGAGGGACATAACTT
CAGGAAATGGATGTGATGTGTACTTGGAAGCAGCTGGTGCTCCTTCCAGT
GTGATACAGGGTGTACATTGTTGTCGGAAAGCAGCGACGATGGTAGAGTT
TTCTGTTTTTAGGAAAGCCACCACCGTGGACTGGACTATCATCGGAGATA
CCAAAGAACTTCTTATAAAGGGTGGCCATTGCTCGGGAGATCGAGGGTAT
TCAAATGCAATTGATTTGTTGAAGAGGGGTCTCTTGCCCACTGAGCGAAT
TGTATCTCACTCGTACCCCCATGGTGAGGTCGTGGAAGCCATTGGCATGG
TCATTGATGGTTCCAAATCTGTGAAAGTTACGGTCGATCTGCATGCGGAA
TGGTAA
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