Ggra1036.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1036.t1
Unique Name	Ggra1036.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:857088..859978 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1036	Ggra1036	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 857088..859978 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1036.t1	Ggra1036.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 857088..859978 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1036.t1.start1	Ggra1036.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 857088..857090 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1036.t1.CDS1	Ggra1036.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 857088..857736 +
Ggra1036.t1.CDS2	Ggra1036.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 859347..859978 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1036.t1.exon1	Ggra1036.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 857088..857736 +
Ggra1036.t1.exon2	Ggra1036.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 859347..859978 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1036.t1.intron1	Ggra1036.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000027_pilon 857737..859346 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1036.t1.stop1	Ggra1036.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 859976..859978 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:857088..859978+
coding sequence from alignment at tig00000027_pilon:857088..859978+

mRNA sequence

>Ggra1036.t1 ID=Ggra1036.t1|Name=Ggra1036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=427bp
MSLPTAKKVQFFTEQVSLENDGVGTPAQEPEGNVGQPLSSLDSTGSEQVT
LYADDSITITVVSETPEEESDNSNPQLSFKISSQDLSGYVTDESSYDLSQ
LLNDDKYSNLSELIAQFRRNDEQVRQSIKGHHQAACAACEDERKQSSDLR
ICPHSPLRFASDISTREQNLKAKKKNETKGNLKETQNETEEQGLKGTQNE
TKEQNLNGKQNETEENDQMTTGPFAFHLMKREVRFADQSAKKKVAPGVRI
HLAPLHPSRSENPAATWSSYPLPRAPSSITICDKIFFPESSEADAALPQT
SEIAGAPEHVFPTYKERIYQQLSAERQFECYRLNRGLHFAEISANIEAES
DVPIYLPPLGASRSDVPSYSWSPHPLPPVPSSFVLEDHEYRSKFAGLHLP
SEPHHEINQASKYSYHSFLHGKRPGY*

spliced messenger RNA

>Ggra1036.t1 ID=Ggra1036.t1|Name=Ggra1036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000027_pilon:857088..859978+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTCCCCACCGCGAAGAAAGTCCAATTTTTTACTGAACAAGTCAG
CCTGGAGAACGATGGCGTCGGGACTCCTGCCCAGGAACCTGAGGGAAATG
TCGGTCAACCATTGTCTTCACTTGACTCCACTGGAAGTGAACAAGTGACT
TTATACGCTGACGACAGTATTACGATCACTGTCGTTTCAGAAACTCCAGA
AGAAGAGTCAGACAATAGTAATCCACAACTTAGCTTCAAAATATCGTCCC
AAGACCTCTCGGGATATGTAACTGATGAATCATCCTATGACCTTTCACAA
CTACTGAATGATGACAAGTATAGTAACCTGTCAGAACTTATAGCTCAATT
TAGAAGAAATGATGAACAAGTAAGGCAATCGATAAAGGGACATCATCAAG
CTGCCTGTGCTGCCTGTGAGGATGAAAGGAAACAATCGTCGGATTTACGT
ATTTGTCCACATTCTCCGCTGCGCTTCGCTTCGGATATTTCTACGCGTGA
GCAGAATCTAAAGGCAAAGAAGAAGAATGAAACTAAGGGGAATCTGAAGG
AAACACAGAATGAAACGGAGGAACAGGGTTTAAAAGGAACACAGAATGAA
ACGAAGGAACAGAATTTGAATGGAAAACAGAATGAAACTGAGGAAAATGA
TCAGATGACGACAGGGCCTTTCGCTTTCCATCTCATGAAGAGGGAAGTGC
GCTTTGCCGATCAATCGGCCAAGAAGAAGGTGGCCCCGGGTGTTCGAATT
CATTTAGCCCCTCTTCATCCGAGCCGTTCGGAGAATCCAGCCGCTACCTG
GTCTAGCTATCCGCTCCCCAGAGCTCCTAGCTCCATTACAATCTGCGACA
AAATATTTTTTCCAGAGAGCTCTGAGGCTGATGCTGCCCTTCCACAGACT
TCAGAAATCGCCGGGGCTCCCGAACATGTTTTTCCAACATACAAAGAGAG
GATTTATCAACAGCTTTCGGCTGAGAGGCAATTTGAGTGTTACCGGCTGA
ATAGGGGACTACACTTCGCTGAAATATCGGCCAACATTGAAGCTGAATCT
GATGTTCCTATCTACCTACCTCCTCTTGGTGCGAGCCGCTCGGATGTCCC
ATCCTATAGCTGGTCTCCGCACCCACTCCCACCAGTTCCCAGCTCTTTTG
TGCTAGAGGATCATGAATATCGCTCAAAGTTCGCCGGCCTTCATCTCCCA
TCCGAGCCGCACCATGAAATCAACCAGGCTTCGAAATATTCTTATCACTC
ATTCCTGCATGGCAAACGCCCAGGGTATTAG

protein sequence of Ggra1036.t1

>Ggra1036.t1 ID=Ggra1036.t1|Name=Ggra1036.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=427bp
MSLPTAKKVQFFTEQVSLENDGVGTPAQEPEGNVGQPLSSLDSTGSEQVT
LYADDSITITVVSETPEEESDNSNPQLSFKISSQDLSGYVTDESSYDLSQ
LLNDDKYSNLSELIAQFRRNDEQVRQSIKGHHQAACAACEDERKQSSDLR
ICPHSPLRFASDISTREQNLKAKKKNETKGNLKETQNETEEQGLKGTQNE
TKEQNLNGKQNETEENDQMTTGPFAFHLMKREVRFADQSAKKKVAPGVRI
HLAPLHPSRSENPAATWSSYPLPRAPSSITICDKIFFPESSEADAALPQT
SEIAGAPEHVFPTYKERIYQQLSAERQFECYRLNRGLHFAEISANIEAES
DVPIYLPPLGASRSDVPSYSWSPHPLPPVPSSFVLEDHEYRSKFAGLHLP
SEPHHEINQASKYSYHSFLHGKRPGY*

mRNA from alignment at tig00000027_pilon:857088..859978+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1036.t1 ID=Ggra1036.t1|Name=Ggra1036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2891bp|location=Sequence derived from alignment at tig00000027_pilon:857088..859978+ (Gracilaria gracilis GNS1m male)
ATGAGTCTCCCCACCGCGAAGAAAGTCCAATTTTTTACTGAACAAGTCAG
CCTGGAGAACGATGGCGTCGGGACTCCTGCCCAGGAACCTGAGGGAAATG
TCGGTCAACCATTGTCTTCACTTGACTCCACTGGAAGTGAACAAGTGACT
TTATACGCTGACGACAGTATTACGATCACTGTCGTTTCAGAAACTCCAGA
AGAAGAGTCAGACAATAGTAATCCACAACTTAGCTTCAAAATATCGTCCC
AAGACCTCTCGGGATATGTAACTGATGAATCATCCTATGACCTTTCACAA
CTACTGAATGATGACAAGTATAGTAACCTGTCAGAACTTATAGCTCAATT
TAGAAGAAATGATGAACAAGTAAGGCAATCGATAAAGGGACATCATCAAG
CTGCCTGTGCTGCCTGTGAGGATGAAAGGAAACAATCGTCGGATTTACGT
ATTTGTCCACATTCTCCGCTGCGCTTCGCTTCGGATATTTCTACGCGTGA
GCAGAATCTAAAGGCAAAGAAGAAGAATGAAACTAAGGGGAATCTGAAGG
AAACACAGAATGAAACGGAGGAACAGGGTTTAAAAGGAACACAGAATGAA
ACGAAGGAACAGAATTTGAATGGAAAACAGAATGAAACTGAGGAAAATGG
TGAGGGAAGTAGACTCCACAGCGGAATACTTCGTTTCCTGCAAACAGTTT
GGTGTGAAATTAAGCGATAAAAAAATTAGAACCCCTTTGAACAAAAAGGC
GAAGTTGCCGTTGTGCGACCAATAGCAGATAGATTTCCCTTTAAATATTT
GCGGAAATGATTAAAAGGGTGATGTCTGTATTGTAACGAAGATGGCGTTT
TTGAAAATCTGTTTCGATTTTATGTTAGAAATTCGACTTAGAAAATCCGG
GAATGAAACGCTGACTAAGCTTACAGACACCACCATTACAGACTGAGCTG
GAAGTGAAGTGGACCAAGTTAGGTCTTGACAGCCGTTGAGTATTTGGGCT
ACAGATGGTTGCGAAGTGAGTATCTATGTACACTATGTGACGGGGATTCT
TTCAGTTTCGGCTACCGTTGGTAACTGACGGAACGTTACTTCAGTACGAG
TCGAGCTCCTGAACGCAGTAACTCCTagaaagaacaagaagaaagaacga
atgaaaACAGCAGTTATTAAACAACCAATATTCCAGTGATCTAATGCTTA
CTCCCGGTTTGCTTCCCCTAAGAGAAAGCGGGACGGCCAGGTATCTACGC
TGACTACACCCACCGTACATCCTGAAATGACAAGGAGGTGGAACATAGAT
CGTAACGAACCTTGTGACTCAATCCTGTGACTCCGAACTtgtcgagcggg
aggcagacagacaagcatatagcagagacagttgcgccccgcttcaagct
gagcttgaattagttaatagtgtggctatataacgcgacgaatagccaca
atatcttgcagaatcgtccgcgggtctccttaaaagccccacggacggat
gagaaaaactaaagatgtcccggcaggcgtctggttgaaAAAAATGTGGA
GCAGAGAGTGGCAAGAAGCGTCTAGTTGAAGCTTTCTACGCCTCTCTCCT
CCCTCTGCTCCACAGGGCTAACGAACGACCTATTGCTAAGCTCTGATGCT
CGGAAAAGGGCTGCAATTTCTGCTCAACTATAGAAGGCTGCAACTAACCA
CTCACAGAGACCGGTTCCATATATATATATGACGGAGTCGGATGGCTACT
GTTTGCGTGTATCCTGCCATCTCGCTTGGGCGAGTGACCCCCGGAATCGT
TCTTCCAATCAGATGGACAGCAATAAGTCAGAAGCTTCAAATTTCAACTT
GCTCCCAATTTCTTGCGCCGGTGACCGACCAGAGCACTGGATCCGAATTC
CGGTCTCGAGCGAGATGTAACGCGATTGAGCCGGAGTTGGCGTTCAAGAA
GCTCGACTTCTTCACTAGCGCACAACTCGGAGCTCTTGATCTTCACAACC
CTCCACCAACCTTCGGTTTTCGCCTTCCTGAGCGTCACTCATTCGCCTCG
GGAGATCTACAAATACTTGGTGCCCCTTTCCCCTCCGCTCTGTCCTTCAT
TTCTCGCTCGTTGATTATCTGCATCTGTCGATCTTACGGATAACTTGAAA
GTGAAACCATTACATCGAGAGGAATACACAGCGGTTCTAGAAATGCATTC
TGGGTTTCAAGCCGCACAAAACAACTGAATCAATGACGCTGTAACCCAGA
ATCCTGCAGATCAGATGACGACAGGGCCTTTCGCTTTCCATCTCATGAAG
AGGGAAGTGCGCTTTGCCGATCAATCGGCCAAGAAGAAGGTGGCCCCGGG
TGTTCGAATTCATTTAGCCCCTCTTCATCCGAGCCGTTCGGAGAATCCAG
CCGCTACCTGGTCTAGCTATCCGCTCCCCAGAGCTCCTAGCTCCATTACA
ATCTGCGACAAAATATTTTTTCCAGAGAGCTCTGAGGCTGATGCTGCCCT
TCCACAGACTTCAGAAATCGCCGGGGCTCCCGAACATGTTTTTCCAACAT
ACAAAGAGAGGATTTATCAACAGCTTTCGGCTGAGAGGCAATTTGAGTGT
TACCGGCTGAATAGGGGACTACACTTCGCTGAAATATCGGCCAACATTGA
AGCTGAATCTGATGTTCCTATCTACCTACCTCCTCTTGGTGCGAGCCGCT
CGGATGTCCCATCCTATAGCTGGTCTCCGCACCCACTCCCACCAGTTCCC
AGCTCTTTTGTGCTAGAGGATCATGAATATCGCTCAAAGTTCGCCGGCCT
TCATCTCCCATCCGAGCCGCACCATGAAATCAACCAGGCTTCGAAATATT
CTTATCACTCATTCCTGCATGGCAAACGCCCAGGGTATTAG

Coding sequence (CDS) from alignment at tig00000027_pilon:857088..859978+

>Ggra1036.t1 ID=Ggra1036.t1|Name=Ggra1036.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1281bp|location=Sequence derived from alignment at tig00000027_pilon:857088..859978+ (Gracilaria gracilis GNS1m male)
ATGAGTCTCCCCACCGCGAAGAAAGTCCAATTTTTTACTGAACAAGTCAG
CCTGGAGAACGATGGCGTCGGGACTCCTGCCCAGGAACCTGAGGGAAATG
TCGGTCAACCATTGTCTTCACTTGACTCCACTGGAAGTGAACAAGTGACT
TTATACGCTGACGACAGTATTACGATCACTGTCGTTTCAGAAACTCCAGA
AGAAGAGTCAGACAATAGTAATCCACAACTTAGCTTCAAAATATCGTCCC
AAGACCTCTCGGGATATGTAACTGATGAATCATCCTATGACCTTTCACAA
CTACTGAATGATGACAAGTATAGTAACCTGTCAGAACTTATAGCTCAATT
TAGAAGAAATGATGAACAAGTAAGGCAATCGATAAAGGGACATCATCAAG
CTGCCTGTGCTGCCTGTGAGGATGAAAGGAAACAATCGTCGGATTTACGT
ATTTGTCCACATTCTCCGCTGCGCTTCGCTTCGGATATTTCTACGCGTGA
GCAGAATCTAAAGGCAAAGAAGAAGAATGAAACTAAGGGGAATCTGAAGG
AAACACAGAATGAAACGGAGGAACAGGGTTTAAAAGGAACACAGAATGAA
ACGAAGGAACAGAATTTGAATGGAAAACAGAATGAAACTGAGGAAAATGA
TCAGATGACGACAGGGCCTTTCGCTTTCCATCTCATGAAGAGGGAAGTGC
GCTTTGCCGATCAATCGGCCAAGAAGAAGGTGGCCCCGGGTGTTCGAATT
CATTTAGCCCCTCTTCATCCGAGCCGTTCGGAGAATCCAGCCGCTACCTG
GTCTAGCTATCCGCTCCCCAGAGCTCCTAGCTCCATTACAATCTGCGACA
AAATATTTTTTCCAGAGAGCTCTGAGGCTGATGCTGCCCTTCCACAGACT
TCAGAAATCGCCGGGGCTCCCGAACATGTTTTTCCAACATACAAAGAGAG
GATTTATCAACAGCTTTCGGCTGAGAGGCAATTTGAGTGTTACCGGCTGA
ATAGGGGACTACACTTCGCTGAAATATCGGCCAACATTGAAGCTGAATCT
GATGTTCCTATCTACCTACCTCCTCTTGGTGCGAGCCGCTCGGATGTCCC
ATCCTATAGCTGGTCTCCGCACCCACTCCCACCAGTTCCCAGCTCTTTTG
TGCTAGAGGATCATGAATATCGCTCAAAGTTCGCCGGCCTTCATCTCCCA
TCCGAGCCGCACCATGAAATCAACCAGGCTTCGAAATATTCTTATCACTC
ATTCCTGCATGGCAAACGCCCAGGGTATTAG