Ggra10358.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10358.t1
Unique NameGgra10358.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length574
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1721616..1723591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10358Ggra10358Gracilaria gracilis GNS1m malegenetig00000016_pilon 1721616..1723591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10358.t1Ggra10358.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1721616..1723591 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10358.t1.stop1Ggra10358.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1721616..1721618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10358.t1.CDS1Ggra10358.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1721616..1722252 -
Ggra10358.t1.CDS2Ggra10358.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1722359..1722993 -
Ggra10358.t1.CDS3Ggra10358.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1723056..1723430 -
Ggra10358.t1.CDS4Ggra10358.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1723517..1723591 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10358.t1.exon1Ggra10358.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1721616..1722252 -
Ggra10358.t1.exon2Ggra10358.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 1722359..1722993 -
Ggra10358.t1.exon3Ggra10358.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 1723056..1723430 -
Ggra10358.t1.exon4Ggra10358.t1.exon4Gracilaria gracilis GNS1m maleexontig00000016_pilon 1723517..1723591 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10358.t1.intron1Ggra10358.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1722253..1722358 -
Ggra10358.t1.intron2Ggra10358.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1722994..1723055 -
Ggra10358.t1.intron3Ggra10358.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1723431..1723516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10358.t1.start1Ggra10358.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1723589..1723591 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10358.t1 ID=Ggra10358.t1|Name=Ggra10358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=574bp
MSETCGRQKTLAFWCTFSEEDTGGWTSAIIAALRAYKIIPRGSTLPPKPE
PPTDMLHKRRSLDLLSDDDEPEDDNNDEVHRDKDPMDLGTESSDDGHRHS
RKSFFSTRGRRRPNISAKSPRTPAQTKPMRKKRKSTATPKTATVPPQTRK
VTALKSRIEEMKASLEKLTASLRRKEKALSDLRPSGNVITFAPVQQDTEP
IETMPQPFTGQLLSSDEFEHRVSAMRQLFDKLDDATNDVHDKRQKLSAEQ
EKIRQHYGSLLDGVSDAQGKVVDHQKKLAELLRGILVNRVAVIDLRKHQA
GNLIKTMSRRYKDMPNISAFCNALYREWKRKIVEYVHNNPGVKDKERTKD
QVPSSEGKEMGPAKNDSAKDGKGNGDVDSEVKSEAKAQDKMEVDSAAKKE
GSSKEGSAKEGSEDSAEKDAKEGQAYDGKKMDVNMEPKEAVKKEKDSQVV
KDASEEKKTAPAENGPHPGQTTEKQPVVAKKKSDEPRSADKDGKISEEKE
EGSSGKQDEGNCVEKPTPEAKKDKKEVKVTRTHRTGTPSVKYRHFQFTSY
ICTPSLISPLFRGVLMHSKPEQL*
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spliced messenger RNA

>Ggra10358.t1 ID=Ggra10358.t1|Name=Ggra10358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000016_pilon:1721616..1723591- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGACGTGCGGTCGTCAAAAGACCCTCGCGTTTTGGTGTACCTT
CTCCGAGGAGGACACTGGCGGCTGGACCTCCGCCATCATCGCTGCTCTTA
GGGCGTATAAAATCATCCCCCGTGGATCCACGCTGCCACCAAAGCCCGAA
CCGCCCACCGATATGCTCCACAAGCGTCGCTCGCTTGATCTATTAAGCGA
TGATGATGAGCCGGAAGATGACAACAATGACGAAGTTCATCGCGACAAGG
ATCCCATGGACCTTGGCACCGAAAGTTCGGACGATGGACATCGTCATAGC
CGCAAGTCTTTCTTTTCAACTCGAGGCCGTCGTCGCCCCAATATCAGTGC
GAAGAGTCCACGCACCCCCGCCCAAACTAAGCCCATGCGCAAGAAGCGCA
AATCTACTGCCACCCCAAAAACTGCCACCGTCCCCCCGCAAACGCGCAAA
GTCACCGCGCTCAAGAGCAGGATTGAAGAAATGAAAGCAAGTCTTGAGAA
GCTTACTGCAAGCTTGCGTCGTAAGGAAAAAGCGCTTTCTGATTTACGCC
CCAGCGGAAACGTCATCACGTTTGCACCCGTCCAGCAGGACACTGAACCC
ATCGAGACTATGCCGCAACCATTCACTGGCCAGCTGCTTTCGTCAGATGA
GTTTGAACACCGAGTTTCTGCCATGAGGCAGTTGTTCGATAAGCTGGATG
ATGCCACCAACGACGTGCACGACAAGCGCCAAAAGTTGTCTGCAGAGCAG
GAGAAAATCCGCCAGCACTACGGCTCTCTGCTGGATGGCGTGTCTGATGC
GCAAGGTAAAGTGGTAGACCATCAGAAGAAACTGGCCGAATTACTGCGTG
GAATTCTTGTTAATCGAGTGGCCGTCATCGACTTGCGTAAACATCAAGCT
GGAAACCTCATCAAGACAATGAGCAGGAGGTACAAAGATATGCCTAACAT
ATCAGCTTTCTGCAACGCGTTGTACCGTGAGTGGAAGAGGAAAATTGTGG
AGTACGTGCACAACAACCCTGGCGTGAAGGACAAAGAGAGGACGAAGGAC
CAAGTACCAAGCTCTGAGGGAAAGGAGATGGGGCCTGCCAAGAATGATAG
TGCCAAGGATGGGAAGGGTAACGGTGACGTAGACAGCGAGGTCAAGAGCG
AAGCGAAAGCGCAGGATAAGATGGAGGTGGACAGCGCTGCCAAGAAGGAA
GGTAGCTCGAAGGAAGGGAGCGCGAAGGAAGGCTCTGAAGACTCGGCCGA
GAAGGACGCTAAGGAAGGACAGGCGTATGACGGGAAGAAAATGGACGTGA
ATATGGAGCCGAAGGAAGCGGTGAAGAAGGAAAAGGACTCTCAAGTTGTG
AAGGACGCGAGCGAAGAAAAGAAGACAGCGCCGGCAGAGAACGGTCCGCA
CCCGGGGCAGACAACAGAAAAGCAACCCGTGGTGGCCAAGAAGAAGAGCG
ATGAGCCACGGTCCGCAGATAAGGATGGAAAAATATCTGAGGAGAAGGAG
GAGGGATCGTCCGGGAAACAAGATGAAGGCAACTGCGTGGAAAAGCCAAC
GCCAGAGGCCAAGAAGGACAAGAAAGAAGTAAAAGTGACTAGAACACACA
GGACCGGAACGCCCTCGGTAAAATACCGACACTTTCAGTTCACCTCGTAC
ATTTGCACACCATCTTTGATCTCTCCTTTATTCAGGGGTGTGCTTATGCA
CTCAAAGCCAGAACAACTTTGA
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protein sequence of Ggra10358.t1

>Ggra10358.t1 ID=Ggra10358.t1|Name=Ggra10358.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=574bp
MSETCGRQKTLAFWCTFSEEDTGGWTSAIIAALRAYKIIPRGSTLPPKPE
PPTDMLHKRRSLDLLSDDDEPEDDNNDEVHRDKDPMDLGTESSDDGHRHS
RKSFFSTRGRRRPNISAKSPRTPAQTKPMRKKRKSTATPKTATVPPQTRK
VTALKSRIEEMKASLEKLTASLRRKEKALSDLRPSGNVITFAPVQQDTEP
IETMPQPFTGQLLSSDEFEHRVSAMRQLFDKLDDATNDVHDKRQKLSAEQ
EKIRQHYGSLLDGVSDAQGKVVDHQKKLAELLRGILVNRVAVIDLRKHQA
GNLIKTMSRRYKDMPNISAFCNALYREWKRKIVEYVHNNPGVKDKERTKD
QVPSSEGKEMGPAKNDSAKDGKGNGDVDSEVKSEAKAQDKMEVDSAAKKE
GSSKEGSAKEGSEDSAEKDAKEGQAYDGKKMDVNMEPKEAVKKEKDSQVV
KDASEEKKTAPAENGPHPGQTTEKQPVVAKKKSDEPRSADKDGKISEEKE
EGSSGKQDEGNCVEKPTPEAKKDKKEVKVTRTHRTGTPSVKYRHFQFTSY
ICTPSLISPLFRGVLMHSKPEQL*
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mRNA from alignment at tig00000016_pilon:1721616..1723591-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10358.t1 ID=Ggra10358.t1|Name=Ggra10358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1976bp|location=Sequence derived from alignment at tig00000016_pilon:1721616..1723591- (Gracilaria gracilis GNS1m male)
ATGAGCGAGACGTGCGGTCGTCAAAAGACCCTCGCGTTTTGGTGTACCTT
CTCCGAGGAGGACACTGGCGGCTGGGTTCGTGCCGATCGATAGTTCTCTT
CCACCGCTTGCTACTCGACTATGTGCGTGTGCGTTCCAATCATGATTGGT
ATAACAGGCAGACCTCCGCCATCATCGCTGCTCTTAGGGCGTATAAAATC
ATCCCCCGTGGATCCACGCTGCCACCAAAGCCCGAACCGCCCACCGATAT
GCTCCACAAGCGTCGCTCGCTTGATCTATTAAGCGATGATGATGAGCCGG
AAGATGACAACAATGACGAAGTTCATCGCGACAAGGATCCCATGGACCTT
GGCACCGAAAGTTCGGACGATGGACATCGTCATAGCCGCAAGTCTTTCTT
TTCAACTCGAGGCCGTCGTCGCCCCAATATCAGTGCGAAGAGTCCACGCA
CCCCCGCCCAAACTAAGCCCATGCGCAAGAAGCGCAAATCTACTGCCACC
CCAAAAACTGCCACCGTCCCCCCGCAAACGCGCAAAGTCCGCCGAGCACC
ACCTAGAGAACCAAGAACCAACTGCTCTATCAATCAGAGTCCAAAAAGGT
CACCGCGCTCAAGAGCAGGATTGAAGAAATGAAAGCAAGTCTTGAGAAGC
TTACTGCAAGCTTGCGTCGTAAGGAAAAAGCGCTTTCTGATTTACGCCCC
AGCGGAAACGTCATCACGTTTGCACCCGTCCAGCAGGACACTGAACCCAT
CGAGACTATGCCGCAACCATTCACTGGCCAGCTGCTTTCGTCAGATGAGT
TTGAACACCGAGTTTCTGCCATGAGGCAGTTGTTCGATAAGCTGGATGAT
GCCACCAACGACGTGCACGACAAGCGCCAAAAGTTGTCTGCAGAGCAGGA
GAAAATCCGCCAGCACTACGGCTCTCTGCTGGATGGCGTGTCTGATGCGC
AAGGTAAAGTGGTAGACCATCAGAAGAAACTGGCCGAATTACTGCGTGGA
ATTCTTGTTAATCGAGTGGCCGTCATCGACTTGCGTAAACATCAAGCTGG
AAACCTCATCAAGACAATGAGCAGGAGGTACAAAGATATGCCTAACATAT
CAGCTTTCTGCAACGCGTTGTACCGTGAGTGGAAGAGGAAAATTGTGGAG
TACGTGCACAACAACCCTGGCGTGAAGGACAAAGAGAGGACGAAGGACCA
AGTACCAAGCTCTGAGGGAAAGGAGATGGGGCCGTGAGTACGCCTTCGGG
TTCTCAAGAAGACAGGTCAAAAAGAAGTGACACCTCTAAGCGTTCCAAGG
GCTCGATGGCAATGGCGCTGCGGAGAAGGACGGTGACAGTGCCAAGAATG
ATAGTGCCAAGGATGGGAAGGGTAACGGTGACGTAGACAGCGAGGTCAAG
AGCGAAGCGAAAGCGCAGGATAAGATGGAGGTGGACAGCGCTGCCAAGAA
GGAAGGTAGCTCGAAGGAAGGGAGCGCGAAGGAAGGCTCTGAAGACTCGG
CCGAGAAGGACGCTAAGGAAGGACAGGCGTATGACGGGAAGAAAATGGAC
GTGAATATGGAGCCGAAGGAAGCGGTGAAGAAGGAAAAGGACTCTCAAGT
TGTGAAGGACGCGAGCGAAGAAAAGAAGACAGCGCCGGCAGAGAACGGTC
CGCACCCGGGGCAGACAACAGAAAAGCAACCCGTGGTGGCCAAGAAGAAG
AGCGATGAGCCACGGTCCGCAGATAAGGATGGAAAAATATCTGAGGAGAA
GGAGGAGGGATCGTCCGGGAAACAAGATGAAGGCAACTGCGTGGAAAAGC
CAACGCCAGAGGCCAAGAAGGACAAGAAAGAAGTAAAAGTGACTAGAACA
CACAGGACCGGAACGCCCTCGGTAAAATACCGACACTTTCAGTTCACCTC
GTACATTTGCACACCATCTTTGATCTCTCCTTTATTCAGGGGTGTGCTTA
TGCACTCAAAGCCAGAACAACTTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1721616..1723591-

>Ggra10358.t1 ID=Ggra10358.t1|Name=Ggra10358.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1722bp|location=Sequence derived from alignment at tig00000016_pilon:1721616..1723591- (Gracilaria gracilis GNS1m male)
ATGAGCGAGACGTGCGGTCGTCAAAAGACCCTCGCGTTTTGGTGTACCTT
CTCCGAGGAGGACACTGGCGGCTGGACCTCCGCCATCATCGCTGCTCTTA
GGGCGTATAAAATCATCCCCCGTGGATCCACGCTGCCACCAAAGCCCGAA
CCGCCCACCGATATGCTCCACAAGCGTCGCTCGCTTGATCTATTAAGCGA
TGATGATGAGCCGGAAGATGACAACAATGACGAAGTTCATCGCGACAAGG
ATCCCATGGACCTTGGCACCGAAAGTTCGGACGATGGACATCGTCATAGC
CGCAAGTCTTTCTTTTCAACTCGAGGCCGTCGTCGCCCCAATATCAGTGC
GAAGAGTCCACGCACCCCCGCCCAAACTAAGCCCATGCGCAAGAAGCGCA
AATCTACTGCCACCCCAAAAACTGCCACCGTCCCCCCGCAAACGCGCAAA
GTCACCGCGCTCAAGAGCAGGATTGAAGAAATGAAAGCAAGTCTTGAGAA
GCTTACTGCAAGCTTGCGTCGTAAGGAAAAAGCGCTTTCTGATTTACGCC
CCAGCGGAAACGTCATCACGTTTGCACCCGTCCAGCAGGACACTGAACCC
ATCGAGACTATGCCGCAACCATTCACTGGCCAGCTGCTTTCGTCAGATGA
GTTTGAACACCGAGTTTCTGCCATGAGGCAGTTGTTCGATAAGCTGGATG
ATGCCACCAACGACGTGCACGACAAGCGCCAAAAGTTGTCTGCAGAGCAG
GAGAAAATCCGCCAGCACTACGGCTCTCTGCTGGATGGCGTGTCTGATGC
GCAAGGTAAAGTGGTAGACCATCAGAAGAAACTGGCCGAATTACTGCGTG
GAATTCTTGTTAATCGAGTGGCCGTCATCGACTTGCGTAAACATCAAGCT
GGAAACCTCATCAAGACAATGAGCAGGAGGTACAAAGATATGCCTAACAT
ATCAGCTTTCTGCAACGCGTTGTACCGTGAGTGGAAGAGGAAAATTGTGG
AGTACGTGCACAACAACCCTGGCGTGAAGGACAAAGAGAGGACGAAGGAC
CAAGTACCAAGCTCTGAGGGAAAGGAGATGGGGCCTGCCAAGAATGATAG
TGCCAAGGATGGGAAGGGTAACGGTGACGTAGACAGCGAGGTCAAGAGCG
AAGCGAAAGCGCAGGATAAGATGGAGGTGGACAGCGCTGCCAAGAAGGAA
GGTAGCTCGAAGGAAGGGAGCGCGAAGGAAGGCTCTGAAGACTCGGCCGA
GAAGGACGCTAAGGAAGGACAGGCGTATGACGGGAAGAAAATGGACGTGA
ATATGGAGCCGAAGGAAGCGGTGAAGAAGGAAAAGGACTCTCAAGTTGTG
AAGGACGCGAGCGAAGAAAAGAAGACAGCGCCGGCAGAGAACGGTCCGCA
CCCGGGGCAGACAACAGAAAAGCAACCCGTGGTGGCCAAGAAGAAGAGCG
ATGAGCCACGGTCCGCAGATAAGGATGGAAAAATATCTGAGGAGAAGGAG
GAGGGATCGTCCGGGAAACAAGATGAAGGCAACTGCGTGGAAAAGCCAAC
GCCAGAGGCCAAGAAGGACAAGAAAGAAGTAAAAGTGACTAGAACACACA
GGACCGGAACGCCCTCGGTAAAATACCGACACTTTCAGTTCACCTCGTAC
ATTTGCACACCATCTTTGATCTCTCCTTTATTCAGGGGTGTGCTTATGCA
CTCAAAGCCAGAACAACTTTGA
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