Ggra10355.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10355.t1
Unique NameGgra10355.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1662401..1662751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog84751.XP_007878653.1
Preferred nameOMA1
PFAMsPeptidase_M48
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006508,GO:0006515,GO:0006807,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019866,GO:0023052,GO:0030163,GO:0031090,GO:0031929,GO:0031966,GO:0031967,GO:0031975,GO:0035556,GO:0035694,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue9.55e-10
EggNOG OGsCOG0501@1|root,KOG2661@2759|Eukaryota,39RBA@33154|Opisthokonta,3NX2W@4751|Fungi,3UZ14@5204|Basidiomycota,3N4ZN@452284|Ustilaginomycotina
DescriptionPeptidase family M48
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10355Ggra10355Gracilaria gracilis GNS1m malegenetig00000016_pilon 1662401..1662751 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10355.t1.start1Ggra10355.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1662401..1662403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10355.t1.CDS1Ggra10355.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1662401..1662751 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10355.t1.exon1Ggra10355.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1662401..1662751 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10355.t1.stop1Ggra10355.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1662749..1662751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10355.t1Ggra10355.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1662401..1662751 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10355.t1 ID=Ggra10355.t1|Name=Ggra10355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=117bp
MLSISLTKLLLEFPFGRRLEWEAEEVGMIIMTEACYDSRKGPSIFDKLAH
AMGEQKGGWVSTQMKSIVSTHPMSARRASDLRKKSEQLADRYEIKCGVAQ
HMLEYDFGFPDVNSLD*
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spliced messenger RNA

>Ggra10355.t1 ID=Ggra10355.t1|Name=Ggra10355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000016_pilon:1662401..1662751+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTTCCGTTCGGAAG
AAGGCTGGAATGGGAAGCCGAAGAGGTCGGAATGATCATAATGACTGAAG
CTTGCTATGATTCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCAT
GCTATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCAT
TGTGTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAA
AGTCCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAA
CACATGCTTGAATACGATTTTGGATTCCCCGATGTCAACTCACTCGATTA
G
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protein sequence of Ggra10355.t1

>Ggra10355.t1 ID=Ggra10355.t1|Name=Ggra10355.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=117bp
MLSISLTKLLLEFPFGRRLEWEAEEVGMIIMTEACYDSRKGPSIFDKLAH
AMGEQKGGWVSTQMKSIVSTHPMSARRASDLRKKSEQLADRYEIKCGVAQ
HMLEYDFGFPDVNSLD*
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mRNA from alignment at tig00000016_pilon:1662401..1662751+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10355.t1 ID=Ggra10355.t1|Name=Ggra10355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000016_pilon:1662401..1662751+ (Gracilaria gracilis GNS1m male)
ATGTTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTTCCGTTCGGAAG
AAGGCTGGAATGGGAAGCCGAAGAGGTCGGAATGATCATAATGACTGAAG
CTTGCTATGATTCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCAT
GCTATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCAT
TGTGTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAA
AGTCCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAA
CACATGCTTGAATACGATTTTGGATTCCCCGATGTCAACTCACTCGATTA
G
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Coding sequence (CDS) from alignment at tig00000016_pilon:1662401..1662751+

>Ggra10355.t1 ID=Ggra10355.t1|Name=Ggra10355.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=351bp|location=Sequence derived from alignment at tig00000016_pilon:1662401..1662751+ (Gracilaria gracilis GNS1m male)
ATGTTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTTCCGTTCGGAAG
AAGGCTGGAATGGGAAGCCGAAGAGGTCGGAATGATCATAATGACTGAAG
CTTGCTATGATTCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCAT
GCTATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCAT
TGTGTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAA
AGTCCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAA
CACATGCTTGAATACGATTTTGGATTCCCCGATGTCAACTCACTCGATTA
G
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