Ggra10354.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10354.t1
Unique Name	Ggra10354.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	629

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:1641249..1643135 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo5g136710.1
PFAMs	ATE_C,ATE_N
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00064
KEGG ko	ko:K00685
KEGG Reaction	R03862
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
Evalue	1.06e-57
EggNOG OGs	COG2935@1\|root,KOG1193@2759\|Eukaryota,37PUQ@33090\|Viridiplantae,3GENZ@35493\|Streptophyta,3HNQS@3699\|Brassicales
EC	2.3.2.8
Description	Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway
COG category	O
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10354	Ggra10354	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 1641249..1643135 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10354.t1.start1	Ggra10354.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 1641249..1641251 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10354.t1.CDS1	Ggra10354.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 1641249..1643135 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10354.t1.exon1	Ggra10354.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 1641249..1643135 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10354.t1.stop1	Ggra10354.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 1643133..1643135 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10354.t1	Ggra10354.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 1641249..1643135 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:1641249..1643135+
coding sequence from alignment at tig00000016_pilon:1641249..1643135+

mRNA sequence

>Ggra10354.t1 ID=Ggra10354.t1|Name=Ggra10354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=629bp
MIQSAQVLRSRVIHLGSDSSRCGYCRRSDGSHSYAFWALRLHVEDYQKLV
DAGWRRSGNYLHRLHLSNTCCPPYVIRLDATNFKPSSTYKRVLKRLRHAS
SSFVINQPHVQREKGKERRKQRMHPLSTASDQKLDTIRVSIVDAAQQLAR
ANDLNPALPIEHVQEATSKFRLFPPRRPAKKASSGSKRKDRVQERPAHVD
ENDVSRWQGNELPNMVSNMALVLAAIERRCGTQSSSPSERSNPERRKDHD
PLKRQMRIANVLQRILSQNQSVCKVSTVGVTNRKFLDCWWNPTYDPSLGE
GEKADKGNDCTHSSETLFHVKQVQPLPSISGHKWRAKSSSMFKTIDVSDV
SEFDVMSDVDHGQRSCPSRASTGSPLPEAKQSEVRSRGQVSNSSNFTMQM
VPSEFREESYELFRRYQMSIHHEGASQCTKDIYTRFLVDSSLTRYQSASN
PEEKHGSHHVLYRIAGRLFAVGVVNVLPRCLSSVYLLYDPDFAKLSPGTL
SALKEIDWIKSVYHIYPSLRYYYMGYYIHSPPKMRYKASFYPPELLCEIS
KNCVPVSEARLIMDSVGEHVLRLDPPEVAPAPEASYFQFDDEEPRRLADG
AILHVGNADDEVMRMLSFKALRETLGKR*

spliced messenger RNA

>Ggra10354.t1 ID=Ggra10354.t1|Name=Ggra10354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000016_pilon:1641249..1643135+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCAGTCCGCTCAGGTTCTCCGTTCTCGCGTAATTCACTTGGGCTC
TGATTCGTCGCGCTGCGGCTATTGTCGCAGGAGTGATGGCAGCCATAGTT
ACGCCTTCTGGGCTCTCCGACTCCATGTCGAGGACTACCAGAAGCTCGTG
GATGCTGGATGGCGTCGAAGCGGTAATTATCTTCATCGTCTCCATCTGAG
CAACACGTGCTGCCCGCCGTACGTCATCCGACTTGACGCCACCAATTTCA
AACCGTCTAGTACCTATAAGCGCGTGCTCAAGCGCCTGCGTCACGCGTCG
TCGTCGTTTGTCATCAACCAGCCGCATGTTCAAAGGGAGAAGGGAAAGGA
GCGACGGAAGCAACGCATGCACCCTTTGTCCACCGCCTCGGATCAAAAGT
TGGACACTATTCGAGTTTCTATCGTTGATGCTGCCCAACAACTGGCCCGG
GCTAATGATCTGAACCCTGCGTTGCCAATTGAGCACGTGCAAGAGGCTAC
ATCTAAGTTTAGACTATTCCCGCCGCGCCGGCCAGCGAAGAAGGCAAGCA
GTGGTTCTAAACGGAAGGACCGGGTTCAAGAAAGACCAGCCCATGTCGAC
GAAAACGATGTTAGTCGGTGGCAAGGTAATGAACTGCCAAACATGGTGAG
CAATATGGCCTTGGTTTTGGCAGCCATAGAGAGAAGATGTGGCACGCAGT
CGTCGTCGCCCAGTGAGCGATCAAATCCAGAGAGACGGAAAGATCATGAC
CCCCTAAAGCGACAGATGCGCATTGCGAATGTTCTTCAGCGCATCTTAAG
CCAAAACCAATCTGTTTGTAAGGTTTCAACTGTTGGTGTGACGAACCGAA
AATTTCTCGACTGCTGGTGGAATCCAACATATGATCCTTCCCTTGGGGAA
GGCGAAAAGGCAGACAAAGGGAACGACTGTACTCACTCGAGTGAAACATT
GTTTCATGTCAAGCAGGTTCAGCCACTACCCAGCATATCTGGACACAAAT
GGAGAGCGAAGAGTTCTTCTATGTTTAAAACCATCGACGTAAGTGACGTC
AGCGAGTTTGATGTGATGAGTGATGTTGATCACGGCCAAAGATCATGTCC
TTCTCGTGCCAGTACAGGCTCCCCTCTGCCCGAAGCCAAACAGTCAGAGG
TACGAAGTCGAGGGCAAGTATCAAATTCGAGCAATTTCACAATGCAAATG
GTGCCGTCGGAATTCCGTGAAGAGTCTTATGAGCTCTTTCGGAGATACCA
AATGTCAATACATCATGAAGGAGCATCGCAATGCACCAAGGACATTTACA
CTAGGTTCCTTGTAGACAGCTCGTTGACGAGGTATCAATCTGCTTCCAAC
CCAGAGGAAAAGCATGGGTCACACCACGTTCTTTACCGAATCGCTGGTAG
GCTTTTCGCAGTTGGCGTTGTGAACGTACTACCACGGTGCCTTAGCTCTG
TTTATCTTCTTTACGATCCTGATTTTGCCAAGTTGTCACCTGGAACACTT
TCCGCTCTTAAGGAGATTGATTGGATCAAGAGCGTATACCATATATACCC
ATCTCTTCGGTATTATTACATGGGTTACTACATTCACTCTCCCCCGAAAA
TGAGGTACAAAGCATCATTTTACCCACCAGAACTTCTGTGCGAAATTTCG
AAGAATTGCGTGCCAGTTTCAGAAGCACGGTTGATCATGGACAGCGTCGG
AGAGCACGTACTGAGACTTGATCCACCAGAAGTTGCCCCGGCGCCGGAGG
CTTCGTATTTCCAGTTTGACGACGAAGAACCGCGACGCTTGGCCGATGGA
GCGATCCTGCATGTTGGAAATGCGGATGACGAAGTAATGAGAATGTTATC
TTTCAAGGCTCTTAGGGAGACACTTGGAAAGAGGTAA

protein sequence of Ggra10354.t1

>Ggra10354.t1 ID=Ggra10354.t1|Name=Ggra10354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=629bp
MIQSAQVLRSRVIHLGSDSSRCGYCRRSDGSHSYAFWALRLHVEDYQKLV
DAGWRRSGNYLHRLHLSNTCCPPYVIRLDATNFKPSSTYKRVLKRLRHAS
SSFVINQPHVQREKGKERRKQRMHPLSTASDQKLDTIRVSIVDAAQQLAR
ANDLNPALPIEHVQEATSKFRLFPPRRPAKKASSGSKRKDRVQERPAHVD
ENDVSRWQGNELPNMVSNMALVLAAIERRCGTQSSSPSERSNPERRKDHD
PLKRQMRIANVLQRILSQNQSVCKVSTVGVTNRKFLDCWWNPTYDPSLGE
GEKADKGNDCTHSSETLFHVKQVQPLPSISGHKWRAKSSSMFKTIDVSDV
SEFDVMSDVDHGQRSCPSRASTGSPLPEAKQSEVRSRGQVSNSSNFTMQM
VPSEFREESYELFRRYQMSIHHEGASQCTKDIYTRFLVDSSLTRYQSASN
PEEKHGSHHVLYRIAGRLFAVGVVNVLPRCLSSVYLLYDPDFAKLSPGTL
SALKEIDWIKSVYHIYPSLRYYYMGYYIHSPPKMRYKASFYPPELLCEIS
KNCVPVSEARLIMDSVGEHVLRLDPPEVAPAPEASYFQFDDEEPRRLADG
AILHVGNADDEVMRMLSFKALRETLGKR*

mRNA from alignment at tig00000016_pilon:1641249..1643135+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10354.t1 ID=Ggra10354.t1|Name=Ggra10354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000016_pilon:1641249..1643135+ (Gracilaria gracilis GNS1m male)
ATGATTCAGTCCGCTCAGGTTCTCCGTTCTCGCGTAATTCACTTGGGCTC
TGATTCGTCGCGCTGCGGCTATTGTCGCAGGAGTGATGGCAGCCATAGTT
ACGCCTTCTGGGCTCTCCGACTCCATGTCGAGGACTACCAGAAGCTCGTG
GATGCTGGATGGCGTCGAAGCGGTAATTATCTTCATCGTCTCCATCTGAG
CAACACGTGCTGCCCGCCGTACGTCATCCGACTTGACGCCACCAATTTCA
AACCGTCTAGTACCTATAAGCGCGTGCTCAAGCGCCTGCGTCACGCGTCG
TCGTCGTTTGTCATCAACCAGCCGCATGTTCAAAGGGAGAAGGGAAAGGA
GCGACGGAAGCAACGCATGCACCCTTTGTCCACCGCCTCGGATCAAAAGT
TGGACACTATTCGAGTTTCTATCGTTGATGCTGCCCAACAACTGGCCCGG
GCTAATGATCTGAACCCTGCGTTGCCAATTGAGCACGTGCAAGAGGCTAC
ATCTAAGTTTAGACTATTCCCGCCGCGCCGGCCAGCGAAGAAGGCAAGCA
GTGGTTCTAAACGGAAGGACCGGGTTCAAGAAAGACCAGCCCATGTCGAC
GAAAACGATGTTAGTCGGTGGCAAGGTAATGAACTGCCAAACATGGTGAG
CAATATGGCCTTGGTTTTGGCAGCCATAGAGAGAAGATGTGGCACGCAGT
CGTCGTCGCCCAGTGAGCGATCAAATCCAGAGAGACGGAAAGATCATGAC
CCCCTAAAGCGACAGATGCGCATTGCGAATGTTCTTCAGCGCATCTTAAG
CCAAAACCAATCTGTTTGTAAGGTTTCAACTGTTGGTGTGACGAACCGAA
AATTTCTCGACTGCTGGTGGAATCCAACATATGATCCTTCCCTTGGGGAA
GGCGAAAAGGCAGACAAAGGGAACGACTGTACTCACTCGAGTGAAACATT
GTTTCATGTCAAGCAGGTTCAGCCACTACCCAGCATATCTGGACACAAAT
GGAGAGCGAAGAGTTCTTCTATGTTTAAAACCATCGACGTAAGTGACGTC
AGCGAGTTTGATGTGATGAGTGATGTTGATCACGGCCAAAGATCATGTCC
TTCTCGTGCCAGTACAGGCTCCCCTCTGCCCGAAGCCAAACAGTCAGAGG
TACGAAGTCGAGGGCAAGTATCAAATTCGAGCAATTTCACAATGCAAATG
GTGCCGTCGGAATTCCGTGAAGAGTCTTATGAGCTCTTTCGGAGATACCA
AATGTCAATACATCATGAAGGAGCATCGCAATGCACCAAGGACATTTACA
CTAGGTTCCTTGTAGACAGCTCGTTGACGAGGTATCAATCTGCTTCCAAC
CCAGAGGAAAAGCATGGGTCACACCACGTTCTTTACCGAATCGCTGGTAG
GCTTTTCGCAGTTGGCGTTGTGAACGTACTACCACGGTGCCTTAGCTCTG
TTTATCTTCTTTACGATCCTGATTTTGCCAAGTTGTCACCTGGAACACTT
TCCGCTCTTAAGGAGATTGATTGGATCAAGAGCGTATACCATATATACCC
ATCTCTTCGGTATTATTACATGGGTTACTACATTCACTCTCCCCCGAAAA
TGAGGTACAAAGCATCATTTTACCCACCAGAACTTCTGTGCGAAATTTCG
AAGAATTGCGTGCCAGTTTCAGAAGCACGGTTGATCATGGACAGCGTCGG
AGAGCACGTACTGAGACTTGATCCACCAGAAGTTGCCCCGGCGCCGGAGG
CTTCGTATTTCCAGTTTGACGACGAAGAACCGCGACGCTTGGCCGATGGA
GCGATCCTGCATGTTGGAAATGCGGATGACGAAGTAATGAGAATGTTATC
TTTCAAGGCTCTTAGGGAGACACTTGGAAAGAGGTAA

Coding sequence (CDS) from alignment at tig00000016_pilon:1641249..1643135+

>Ggra10354.t1 ID=Ggra10354.t1|Name=Ggra10354.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1887bp|location=Sequence derived from alignment at tig00000016_pilon:1641249..1643135+ (Gracilaria gracilis GNS1m male)
ATGATTCAGTCCGCTCAGGTTCTCCGTTCTCGCGTAATTCACTTGGGCTC
TGATTCGTCGCGCTGCGGCTATTGTCGCAGGAGTGATGGCAGCCATAGTT
ACGCCTTCTGGGCTCTCCGACTCCATGTCGAGGACTACCAGAAGCTCGTG
GATGCTGGATGGCGTCGAAGCGGTAATTATCTTCATCGTCTCCATCTGAG
CAACACGTGCTGCCCGCCGTACGTCATCCGACTTGACGCCACCAATTTCA
AACCGTCTAGTACCTATAAGCGCGTGCTCAAGCGCCTGCGTCACGCGTCG
TCGTCGTTTGTCATCAACCAGCCGCATGTTCAAAGGGAGAAGGGAAAGGA
GCGACGGAAGCAACGCATGCACCCTTTGTCCACCGCCTCGGATCAAAAGT
TGGACACTATTCGAGTTTCTATCGTTGATGCTGCCCAACAACTGGCCCGG
GCTAATGATCTGAACCCTGCGTTGCCAATTGAGCACGTGCAAGAGGCTAC
ATCTAAGTTTAGACTATTCCCGCCGCGCCGGCCAGCGAAGAAGGCAAGCA
GTGGTTCTAAACGGAAGGACCGGGTTCAAGAAAGACCAGCCCATGTCGAC
GAAAACGATGTTAGTCGGTGGCAAGGTAATGAACTGCCAAACATGGTGAG
CAATATGGCCTTGGTTTTGGCAGCCATAGAGAGAAGATGTGGCACGCAGT
CGTCGTCGCCCAGTGAGCGATCAAATCCAGAGAGACGGAAAGATCATGAC
CCCCTAAAGCGACAGATGCGCATTGCGAATGTTCTTCAGCGCATCTTAAG
CCAAAACCAATCTGTTTGTAAGGTTTCAACTGTTGGTGTGACGAACCGAA
AATTTCTCGACTGCTGGTGGAATCCAACATATGATCCTTCCCTTGGGGAA
GGCGAAAAGGCAGACAAAGGGAACGACTGTACTCACTCGAGTGAAACATT
GTTTCATGTCAAGCAGGTTCAGCCACTACCCAGCATATCTGGACACAAAT
GGAGAGCGAAGAGTTCTTCTATGTTTAAAACCATCGACGTAAGTGACGTC
AGCGAGTTTGATGTGATGAGTGATGTTGATCACGGCCAAAGATCATGTCC
TTCTCGTGCCAGTACAGGCTCCCCTCTGCCCGAAGCCAAACAGTCAGAGG
TACGAAGTCGAGGGCAAGTATCAAATTCGAGCAATTTCACAATGCAAATG
GTGCCGTCGGAATTCCGTGAAGAGTCTTATGAGCTCTTTCGGAGATACCA
AATGTCAATACATCATGAAGGAGCATCGCAATGCACCAAGGACATTTACA
CTAGGTTCCTTGTAGACAGCTCGTTGACGAGGTATCAATCTGCTTCCAAC
CCAGAGGAAAAGCATGGGTCACACCACGTTCTTTACCGAATCGCTGGTAG
GCTTTTCGCAGTTGGCGTTGTGAACGTACTACCACGGTGCCTTAGCTCTG
TTTATCTTCTTTACGATCCTGATTTTGCCAAGTTGTCACCTGGAACACTT
TCCGCTCTTAAGGAGATTGATTGGATCAAGAGCGTATACCATATATACCC
ATCTCTTCGGTATTATTACATGGGTTACTACATTCACTCTCCCCCGAAAA
TGAGGTACAAAGCATCATTTTACCCACCAGAACTTCTGTGCGAAATTTCG
AAGAATTGCGTGCCAGTTTCAGAAGCACGGTTGATCATGGACAGCGTCGG
AGAGCACGTACTGAGACTTGATCCACCAGAAGTTGCCCCGGCGCCGGAGG
CTTCGTATTTCCAGTTTGACGACGAAGAACCGCGACGCTTGGCCGATGGA
GCGATCCTGCATGTTGGAAATGCGGATGACGAAGTAATGAGAATGTTATC
TTTCAAGGCTCTTAGGGAGACACTTGGAAAGAGGTAA